Protein–RNA interactions for Protein: Q96RU2

USP28, Ubiquitin carboxyl-terminal hydrolase 28, humanhuman

Predictions only

Length 1,077 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP28Q96RU2 RNU6-1115P-201ENST00000362490 106 ntBASIC2.09□□□□□ -2.07
USP28Q96RU2 Y_RNA.111-201ENST00000363248 100 ntBASIC2.09□□□□□ -2.07
USP28Q96RU2 SNORD48-201ENST00000364953 64 ntBASIC2.09□□□□□ -2.07
USP28Q96RU2 SNORD42.2-201ENST00000365570 69 ntBASIC2.09□□□□□ -2.07
USP28Q96RU2 RNU6-1286P-201ENST00000383871 107 ntBASIC2.09□□□□□ -2.07
USP28Q96RU2 RNU6-308P-201ENST00000390957 107 ntBASIC2.09□□□□□ -2.07
USP28Q96RU2 SNORA46.1-201ENST00000391069 153 ntBASIC2.09□□□□□ -2.07
USP28Q96RU2 RPS20P15-201ENST00000412792 311 ntBASIC2.09□□□□□ -2.07
USP28Q96RU2 EDDM3CP-201ENST00000415977 425 ntBASIC2.09□□□□□ -2.07
USP28Q96RU2 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC2.09□□□□□ -2.07
USP28Q96RU2 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC2.09□□□□□ -2.07
USP28Q96RU2 snoU13.14-201ENST00000459372 104 ntBASIC2.09□□□□□ -2.07
USP28Q96RU2 RPL30P10-201ENST00000488148 337 ntBASIC2.09□□□□□ -2.07
USP28Q96RU2 RPL23AP75-201ENST00000491601 451 ntBASIC2.09□□□□□ -2.07
USP28Q96RU2 AC007375.1-201ENST00000554513 578 ntBASIC2.09□□□□□ -2.07
USP28Q96RU2 ANP32BP3-201ENST00000559213 706 ntBASIC2.09□□□□□ -2.07
USP28Q96RU2 AC008749.1-201ENST00000597650 306 ntBASIC2.09□□□□□ -2.07
USP28Q96RU2 RPL30P11-203ENST00000598995 310 ntBASIC2.09□□□□□ -2.07
USP28Q96RU2 AL080274.1-201ENST00000605565 220 ntBASIC2.09□□□□□ -2.07
USP28Q96RU2 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC2.09□□□□□ -2.07
USP28Q96RU2 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC2.09□□□□□ -2.08
USP28Q96RU2 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC2.09□□□□□ -2.08
USP28Q96RU2 AC233981.2-201ENST00000611524 1614 ntBASIC2.09□□□□□ -2.08
USP28Q96RU2 ZNF299P-201ENST00000406845 1804 ntBASIC2.08□□□□□ -2.08
USP28Q96RU2 Y_RNA.11-201ENST00000362375 109 ntBASIC2.08□□□□□ -2.08
USP28Q96RU2 Y_RNA.31-201ENST00000362574 102 ntBASIC2.08□□□□□ -2.08
USP28Q96RU2 RNU5B-2P-201ENST00000363036 113 ntBASIC2.08□□□□□ -2.08
USP28Q96RU2 Y_RNA.146-201ENST00000363549 102 ntBASIC2.08□□□□□ -2.08
USP28Q96RU2 RNU6-595P-201ENST00000363944 107 ntBASIC2.08□□□□□ -2.08
USP28Q96RU2 RNU6-99P-201ENST00000364721 107 ntBASIC2.08□□□□□ -2.08
USP28Q96RU2 RNU6-1040P-201ENST00000383974 107 ntBASIC2.08□□□□□ -2.08
USP28Q96RU2 RNU6-474P-201ENST00000384243 107 ntBASIC2.08□□□□□ -2.08
USP28Q96RU2 Y_RNA.496-201ENST00000384444 101 ntBASIC2.08□□□□□ -2.08
USP28Q96RU2 MIR549A-201ENST00000385268 96 ntBASIC2.08□□□□□ -2.08
USP28Q96RU2 SNORA26.3-201ENST00000391119 136 ntBASIC2.08□□□□□ -2.08
USP28Q96RU2 RNA5SP494-201ENST00000410653 129 ntBASIC2.08□□□□□ -2.08
USP28Q96RU2 AC093423.2-201ENST00000429074 437 ntTSL 3 BASIC2.08□□□□□ -2.08
USP28Q96RU2 RPL23AP50-201ENST00000434149 455 ntBASIC2.08□□□□□ -2.08
USP28Q96RU2 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.08□□□□□ -2.08
USP28Q96RU2 AL513124.1-201ENST00000450410 614 ntBASIC2.08□□□□□ -2.08
USP28Q96RU2 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC2.08□□□□□ -2.08
USP28Q96RU2 HMGB1P35-201ENST00000503360 598 ntBASIC2.08□□□□□ -2.08
USP28Q96RU2 AC016632.1-201ENST00000503994 196 ntBASIC2.08□□□□□ -2.08
USP28Q96RU2 AC105758.1-201ENST00000506038 399 ntBASIC2.08□□□□□ -2.08
USP28Q96RU2 RNU6-470P-201ENST00000515954 104 ntBASIC2.08□□□□□ -2.08
USP28Q96RU2 RNU6-699P-201ENST00000517081 110 ntBASIC2.08□□□□□ -2.08
USP28Q96RU2 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC2.08□□□□□ -2.08
USP28Q96RU2 AP000889.1-201ENST00000530968 660 ntBASIC2.08□□□□□ -2.08
USP28Q96RU2 AC009120.5-201ENST00000561669 475 ntTSL 5 BASIC2.08□□□□□ -2.08
USP28Q96RU2 MIR4419B-201ENST00000577260 68 ntBASIC2.08□□□□□ -2.08
USP28Q96RU2 LINC01900-203ENST00000585185 393 ntTSL 3 BASIC2.08□□□□□ -2.08
USP28Q96RU2 AL713866.2-201ENST00000603579 219 ntBASIC2.08□□□□□ -2.08
USP28Q96RU2 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC2.08□□□□□ -2.08
USP28Q96RU2 AL162373.1-201ENST00000620433 407 ntBASIC2.08□□□□□ -2.08
USP28Q96RU2 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
USP28Q96RU2 OR8K3-204ENST00000641689 2380 ntAPPRIS P1 BASIC2.07□□□□□ -2.08
USP28Q96RU2 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.07□□□□□ -2.08
USP28Q96RU2 Y_RNA.5-201ENST00000362334 102 ntBASIC2.07□□□□□ -2.08
USP28Q96RU2 RNU4-15P-201ENST00000362613 141 ntBASIC2.07□□□□□ -2.08
USP28Q96RU2 RNU6-655P-201ENST00000362858 107 ntBASIC2.07□□□□□ -2.08
USP28Q96RU2 RNY1P16-201ENST00000363063 111 ntBASIC2.07□□□□□ -2.08
USP28Q96RU2 RNU6-1210P-201ENST00000363775 107 ntBASIC2.07□□□□□ -2.08
USP28Q96RU2 RNY3P11-201ENST00000364153 102 ntBASIC2.07□□□□□ -2.08
USP28Q96RU2 Y_RNA.216-201ENST00000364205 93 ntBASIC2.07□□□□□ -2.08
USP28Q96RU2 Y_RNA.463-201ENST00000384271 102 ntBASIC2.07□□□□□ -2.08
USP28Q96RU2 MIR9-3-201ENST00000385084 90 ntBASIC2.07□□□□□ -2.08
USP28Q96RU2 SNORA12-201ENST00000391162 147 ntBASIC2.07□□□□□ -2.08
USP28Q96RU2 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC2.07□□□□□ -2.08
USP28Q96RU2 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC2.07□□□□□ -2.08
USP28Q96RU2 MTND4P28-201ENST00000426217 387 ntBASIC2.07□□□□□ -2.08
USP28Q96RU2 AC078809.1-201ENST00000427601 140 ntBASIC2.07□□□□□ -2.08
USP28Q96RU2 AC020594.1-201ENST00000437680 338 ntTSL 3 BASIC2.07□□□□□ -2.08
USP28Q96RU2 LINC01594-201ENST00000445083 611 ntTSL 5 BASIC2.07□□□□□ -2.08
USP28Q96RU2 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
USP28Q96RU2 TOMM22P6-201ENST00000465035 409 ntBASIC2.07□□□□□ -2.08
USP28Q96RU2 AC096721.1-201ENST00000513540 552 ntTSL 4 BASIC2.07□□□□□ -2.08
USP28Q96RU2 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC2.07□□□□□ -2.08
USP28Q96RU2 HSPE1P18-201ENST00000517602 280 ntBASIC2.07□□□□□ -2.08
USP28Q96RU2 AC109329.1-201ENST00000518744 317 ntBASIC2.07□□□□□ -2.08
USP28Q96RU2 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC2.07□□□□□ -2.08
USP28Q96RU2 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC2.07□□□□□ -2.08
USP28Q96RU2 AC110588.1-201ENST00000559699 137 ntBASIC2.07□□□□□ -2.08
USP28Q96RU2 MIR5701-3-201ENST00000578890 82 ntBASIC2.07□□□□□ -2.08
USP28Q96RU2 MIR4648-201ENST00000580107 72 ntBASIC2.07□□□□□ -2.08
USP28Q96RU2 MIR4435-1-201ENST00000582552 80 ntBASIC2.07□□□□□ -2.08
USP28Q96RU2 MIR5701-1-201ENST00000585138 82 ntBASIC2.07□□□□□ -2.08
USP28Q96RU2 AC044792.1-201ENST00000593294 196 ntBASIC2.07□□□□□ -2.08
USP28Q96RU2 AL356055.1-201ENST00000602528 446 ntBASIC2.07□□□□□ -2.08
USP28Q96RU2 Z98751.3-201ENST00000604447 521 ntBASIC2.07□□□□□ -2.08
USP28Q96RU2 AL034555.1-201ENST00000604816 211 ntBASIC2.07□□□□□ -2.08
USP28Q96RU2 AL356157.2-201ENST00000605122 111 ntBASIC2.07□□□□□ -2.08
USP28Q96RU2 MIR1244-1-201ENST00000612829 85 ntBASIC2.07□□□□□ -2.08
USP28Q96RU2 MIR5701-2-201ENST00000615634 82 ntBASIC2.07□□□□□ -2.08
USP28Q96RU2 MIR1244-3-201ENST00000635744 85 ntBASIC2.07□□□□□ -2.08
USP28Q96RU2 MIR1244-2-201ENST00000636449 85 ntBASIC2.07□□□□□ -2.08
USP28Q96RU2 MIR1244-4-202ENST00000636813 85 ntBASIC2.07□□□□□ -2.08
USP28Q96RU2 MTND5P10-201ENST00000603719 1809 ntBASIC2.07□□□□□ -2.08
USP28Q96RU2 TBL1XR1-208ENST00000430069 7948 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
USP28Q96RU2 AC092881.1-201ENST00000638218 2733 ntBASIC2.06□□□□□ -2.08
USP28Q96RU2 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC2.06□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 118.4 ms