Protein–RNA interactions for Protein: Q96CM3

RPUSD4, Mitochondrial RNA pseudouridine synthase RPUSD4, humanhuman

Known RBP Predictions only

Length 377 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPUSD4Q96CM3 AC019129.1-201ENST00000403786 261 ntBASIC1.4□□□□□ -2.19
RPUSD4Q96CM3 MIR1283-1-201ENST00000408494 87 ntBASIC1.4□□□□□ -2.19
RPUSD4Q96CM3 RNU2-2P-201ENST00000410396 191 ntBASIC1.4□□□□□ -2.19
RPUSD4Q96CM3 AC243428.1-201ENST00000421099 264 ntBASIC1.4□□□□□ -2.19
RPUSD4Q96CM3 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.4□□□□□ -2.19
RPUSD4Q96CM3 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.4□□□□□ -2.19
RPUSD4Q96CM3 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC1.4□□□□□ -2.19
RPUSD4Q96CM3 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.4□□□□□ -2.19
RPUSD4Q96CM3 NDUFAF4P4-201ENST00000454883 502 ntBASIC1.4□□□□□ -2.19
RPUSD4Q96CM3 AC092989.1-201ENST00000481235 277 ntBASIC1.4□□□□□ -2.19
RPUSD4Q96CM3 RNU6-344P-201ENST00000516635 111 ntBASIC1.4□□□□□ -2.19
RPUSD4Q96CM3 RNU6-1198P-201ENST00000516904 67 ntBASIC1.4□□□□□ -2.19
RPUSD4Q96CM3 RNU6-856P-201ENST00000516959 98 ntBASIC1.4□□□□□ -2.19
RPUSD4Q96CM3 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.4□□□□□ -2.19
RPUSD4Q96CM3 SUB1P4-201ENST00000566062 339 ntBASIC1.4□□□□□ -2.19
RPUSD4Q96CM3 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.4□□□□□ -2.19
RPUSD4Q96CM3 MIR4713-201ENST00000582691 75 ntBASIC1.4□□□□□ -2.19
RPUSD4Q96CM3 AP000907.4-201ENST00000604143 237 ntBASIC1.4□□□□□ -2.19
RPUSD4Q96CM3 SNRPGP20-201ENST00000604477 205 ntBASIC1.4□□□□□ -2.19
RPUSD4Q96CM3 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC1.4□□□□□ -2.19
RPUSD4Q96CM3 U2.15-201ENST00000611544 191 ntBASIC1.4□□□□□ -2.19
RPUSD4Q96CM3 U2.16-201ENST00000613119 191 ntBASIC1.4□□□□□ -2.19
RPUSD4Q96CM3 U2.12-201ENST00000613778 191 ntBASIC1.4□□□□□ -2.19
RPUSD4Q96CM3 U2.20-201ENST00000613956 192 ntBASIC1.4□□□□□ -2.19
RPUSD4Q96CM3 U2.9-201ENST00000615427 191 ntBASIC1.4□□□□□ -2.19
RPUSD4Q96CM3 U2.11-201ENST00000616345 191 ntBASIC1.4□□□□□ -2.19
RPUSD4Q96CM3 U2.2-201ENST00000616535 191 ntBASIC1.4□□□□□ -2.19
RPUSD4Q96CM3 U2.3-201ENST00000617785 191 ntBASIC1.4□□□□□ -2.19
RPUSD4Q96CM3 U2.19-201ENST00000618602 191 ntBASIC1.4□□□□□ -2.19
RPUSD4Q96CM3 RNU2-1-201ENST00000618664 191 ntBASIC1.4□□□□□ -2.19
RPUSD4Q96CM3 U2.6-201ENST00000619225 191 ntBASIC1.4□□□□□ -2.19
RPUSD4Q96CM3 U2.5-201ENST00000619465 191 ntBASIC1.4□□□□□ -2.19
RPUSD4Q96CM3 U2.10-201ENST00000620268 191 ntBASIC1.4□□□□□ -2.19
RPUSD4Q96CM3 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC1.4□□□□□ -2.19
RPUSD4Q96CM3 AC008873.1-201ENST00000625051 138 ntBASIC1.4□□□□□ -2.19
RPUSD4Q96CM3 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.4□□□□□ -2.19
RPUSD4Q96CM3 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.39□□□□□ -2.19
RPUSD4Q96CM3 SNORA67.2-201ENST00000384300 149 ntBASIC1.39□□□□□ -2.19
RPUSD4Q96CM3 RNU6-1026P-201ENST00000384465 108 ntBASIC1.39□□□□□ -2.19
RPUSD4Q96CM3 MIR586-201ENST00000385035 97 ntBASIC1.39□□□□□ -2.19
RPUSD4Q96CM3 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC1.39□□□□□ -2.19
RPUSD4Q96CM3 AC139712.2-201ENST00000424302 339 ntBASIC1.39□□□□□ -2.19
RPUSD4Q96CM3 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.39□□□□□ -2.19
RPUSD4Q96CM3 AC004386.2-201ENST00000441858 148 ntBASIC1.39□□□□□ -2.19
RPUSD4Q96CM3 SNRPEP8-201ENST00000442866 260 ntBASIC1.39□□□□□ -2.19
RPUSD4Q96CM3 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC1.39□□□□□ -2.19
RPUSD4Q96CM3 SNORD5.1-201ENST00000458800 75 ntBASIC1.39□□□□□ -2.19
RPUSD4Q96CM3 RNU1-98P-201ENST00000458992 160 ntBASIC1.39□□□□□ -2.19
RPUSD4Q96CM3 AC008549.1-201ENST00000512900 643 ntBASIC1.39□□□□□ -2.19
RPUSD4Q96CM3 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC1.39□□□□□ -2.19
RPUSD4Q96CM3 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC1.39□□□□□ -2.19
RPUSD4Q96CM3 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.39□□□□□ -2.19
RPUSD4Q96CM3 AL161716.1-201ENST00000606365 273 ntTSL 5 BASIC1.39□□□□□ -2.19
RPUSD4Q96CM3 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC1.39□□□□□ -2.19
RPUSD4Q96CM3 AC092794.1-201ENST00000612734 582 ntBASIC1.39□□□□□ -2.19
RPUSD4Q96CM3 AC009248.2-201ENST00000619826 254 ntBASIC1.39□□□□□ -2.19
RPUSD4Q96CM3 MIR6852-201ENST00000621699 66 ntBASIC1.39□□□□□ -2.19
RPUSD4Q96CM3 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC1.38□□□□□ -2.19
RPUSD4Q96CM3 AC092881.1-201ENST00000638218 2733 ntBASIC1.38□□□□□ -2.19
RPUSD4Q96CM3 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
RPUSD4Q96CM3 RNU6-593P-201ENST00000364716 112 ntBASIC1.38□□□□□ -2.19
RPUSD4Q96CM3 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.38□□□□□ -2.19
RPUSD4Q96CM3 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC1.38□□□□□ -2.19
RPUSD4Q96CM3 MIR320B2-201ENST00000408479 138 ntBASIC1.38□□□□□ -2.19
RPUSD4Q96CM3 RNA5SP100-201ENST00000410903 110 ntBASIC1.38□□□□□ -2.19
RPUSD4Q96CM3 RNA5SP59-201ENST00000410922 110 ntBASIC1.38□□□□□ -2.19
RPUSD4Q96CM3 RN7SKP192-201ENST00000411291 327 ntBASIC1.38□□□□□ -2.19
RPUSD4Q96CM3 AC004866.1-201ENST00000411748 78 ntBASIC1.38□□□□□ -2.19
RPUSD4Q96CM3 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC1.38□□□□□ -2.19
RPUSD4Q96CM3 MTND5P5-201ENST00000503764 376 ntBASIC1.38□□□□□ -2.19
RPUSD4Q96CM3 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC1.38□□□□□ -2.19
RPUSD4Q96CM3 RNU4-49P-201ENST00000516080 140 ntBASIC1.38□□□□□ -2.19
RPUSD4Q96CM3 RNVU1-2-201ENST00000516326 135 ntBASIC1.38□□□□□ -2.19
RPUSD4Q96CM3 5S_rRNA.3-201ENST00000517021 110 ntBASIC1.38□□□□□ -2.19
RPUSD4Q96CM3 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.38□□□□□ -2.19
RPUSD4Q96CM3 BNIP3P10-201ENST00000605360 577 ntBASIC1.38□□□□□ -2.19
RPUSD4Q96CM3 5S_rRNA.19-201ENST00000612131 110 ntBASIC1.38□□□□□ -2.19
RPUSD4Q96CM3 5S_rRNA.18-201ENST00000621941 110 ntBASIC1.38□□□□□ -2.19
RPUSD4Q96CM3 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC1.38□□□□□ -2.19
RPUSD4Q96CM3 SLC9C2-201ENST00000367714 4428 ntAPPRIS P1 TSL 1 (best) BASIC1.38□□□□□ -2.19
RPUSD4Q96CM3 AC027514.1-201ENST00000588561 1603 ntBASIC1.37□□□□□ -2.19
RPUSD4Q96CM3 Y_RNA.86-201ENST00000363020 111 ntBASIC1.37□□□□□ -2.19
RPUSD4Q96CM3 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.37□□□□□ -2.19
RPUSD4Q96CM3 RNU6-17P-201ENST00000384245 107 ntBASIC1.37□□□□□ -2.19
RPUSD4Q96CM3 RNU6-18P-201ENST00000384527 107 ntBASIC1.37□□□□□ -2.19
RPUSD4Q96CM3 RNU6-1235P-201ENST00000384559 107 ntBASIC1.37□□□□□ -2.19
RPUSD4Q96CM3 MIR153-2-201ENST00000385225 87 ntBASIC1.37□□□□□ -2.19
RPUSD4Q96CM3 AL356776.1-201ENST00000406574 447 ntBASIC1.37□□□□□ -2.19
RPUSD4Q96CM3 RNU6ATAC25P-201ENST00000408798 117 ntBASIC1.37□□□□□ -2.19
RPUSD4Q96CM3 Y_RNA.599-201ENST00000410489 109 ntBASIC1.37□□□□□ -2.19
RPUSD4Q96CM3 MTND3P8-201ENST00000412909 339 ntBASIC1.37□□□□□ -2.19
RPUSD4Q96CM3 AL139396.1-201ENST00000421137 167 ntBASIC1.37□□□□□ -2.19
RPUSD4Q96CM3 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC1.37□□□□□ -2.19
RPUSD4Q96CM3 NFU1P2-201ENST00000448700 469 ntBASIC1.37□□□□□ -2.19
RPUSD4Q96CM3 MTCO3P8-201ENST00000453691 755 ntBASIC1.37□□□□□ -2.19
RPUSD4Q96CM3 AC112492.4-201ENST00000456549 352 ntBASIC1.37□□□□□ -2.19
RPUSD4Q96CM3 snoU13.30-201ENST00000458951 104 ntBASIC1.37□□□□□ -2.19
RPUSD4Q96CM3 RNU6-498P-201ENST00000459468 107 ntBASIC1.37□□□□□ -2.19
RPUSD4Q96CM3 CPHL1P-203ENST00000471823 523 ntTSL 5 BASIC1.37□□□□□ -2.19
RPUSD4Q96CM3 AC027575.1-201ENST00000481064 460 ntBASIC1.37□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 119 ms