Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 FAM157A-202ENST00000615155 405 ntBASIC0.09□□□□□ -2.39
USP54Q70EL1 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC0.09□□□□□ -2.39
USP54Q70EL1 MESTIT1_1.1-201ENST00000618871 140 ntBASIC0.09□□□□□ -2.39
USP54Q70EL1 Y_RNA.167-201ENST00000363735 109 ntBASIC0.08□□□□□ -2.4
USP54Q70EL1 RNU6-25P-201ENST00000383873 107 ntBASIC0.08□□□□□ -2.4
USP54Q70EL1 RNU6-48P-201ENST00000384161 107 ntBASIC0.08□□□□□ -2.4
USP54Q70EL1 RNU6-505P-201ENST00000384427 107 ntBASIC0.08□□□□□ -2.4
USP54Q70EL1 RNU6-15P-201ENST00000384534 107 ntBASIC0.08□□□□□ -2.4
USP54Q70EL1 RNU6-29P-201ENST00000384637 107 ntBASIC0.08□□□□□ -2.4
USP54Q70EL1 MIR1295A-201ENST00000408463 79 ntBASIC0.08□□□□□ -2.4
USP54Q70EL1 MIR1283-1-201ENST00000408494 87 ntBASIC0.08□□□□□ -2.4
USP54Q70EL1 RNU2-39P-201ENST00000410604 198 ntBASIC0.08□□□□□ -2.4
USP54Q70EL1 AL049829.1-201ENST00000465411 156 ntBASIC0.08□□□□□ -2.4
USP54Q70EL1 HMGB1P29-201ENST00000505659 499 ntBASIC0.08□□□□□ -2.4
USP54Q70EL1 RNU7-51P-201ENST00000516560 62 ntBASIC0.08□□□□□ -2.4
USP54Q70EL1 AP001542.1-201ENST00000591314 200 ntBASIC0.08□□□□□ -2.4
USP54Q70EL1 AC100781.1-202ENST00000597906 463 ntTSL 5 BASIC0.08□□□□□ -2.4
USP54Q70EL1 SNRPGP20-201ENST00000604477 205 ntBASIC0.08□□□□□ -2.4
USP54Q70EL1 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC0.08□□□□□ -2.4
USP54Q70EL1 7SK.10-201ENST00000621414 298 ntBASIC0.08□□□□□ -2.4
USP54Q70EL1 AL513423.1-201ENST00000621695 132 ntBASIC0.08□□□□□ -2.4
USP54Q70EL1 AL078595.3-201ENST00000623815 1166 ntBASIC0.08□□□□□ -2.4
USP54Q70EL1 AL163152.1-201ENST00000642001 374 ntBASIC0.08□□□□□ -2.4
USP54Q70EL1 RNU6-199P-201ENST00000362954 107 ntBASIC0.08□□□□□ -2.4
USP54Q70EL1 RNU4-76P-201ENST00000364509 141 ntBASIC0.08□□□□□ -2.4
USP54Q70EL1 Y_RNA.324-201ENST00000365165 102 ntBASIC0.08□□□□□ -2.4
USP54Q70EL1 RNU6-692P-201ENST00000384496 107 ntBASIC0.08□□□□□ -2.4
USP54Q70EL1 RNU6-607P-201ENST00000411283 108 ntBASIC0.08□□□□□ -2.4
USP54Q70EL1 AL133396.1-201ENST00000432048 687 ntBASIC0.08□□□□□ -2.4
USP54Q70EL1 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC0.08□□□□□ -2.4
USP54Q70EL1 RNU6-1110P-201ENST00000516462 101 ntBASIC0.08□□□□□ -2.4
USP54Q70EL1 RNU6-1003P-201ENST00000517099 105 ntBASIC0.08□□□□□ -2.4
USP54Q70EL1 AC064807.4-201ENST00000607201 407 ntBASIC0.08□□□□□ -2.4
USP54Q70EL1 AC097065.2-201ENST00000608159 533 ntBASIC0.08□□□□□ -2.4
USP54Q70EL1 SNORD114-15-201ENST00000364687 72 ntBASIC0.07□□□□□ -2.4
USP54Q70EL1 AC007283.2-201ENST00000424739 197 ntBASIC0.07□□□□□ -2.4
USP54Q70EL1 AL606517.2-201ENST00000442855 241 ntBASIC0.07□□□□□ -2.4
USP54Q70EL1 AL590422.1-201ENST00000451829 364 ntTSL 3 BASIC0.07□□□□□ -2.4
USP54Q70EL1 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC0.07□□□□□ -2.4
USP54Q70EL1 RNU7-94P-201ENST00000459576 63 ntBASIC0.07□□□□□ -2.4
USP54Q70EL1 AC079349.1-201ENST00000509096 589 ntTSL 2 BASIC0.07□□□□□ -2.4
USP54Q70EL1 MTCO3P27-201ENST00000514397 196 ntBASIC0.07□□□□□ -2.4
USP54Q70EL1 RNU6-567P-201ENST00000516746 107 ntBASIC0.07□□□□□ -2.4
USP54Q70EL1 AC004584.2-201ENST00000570407 410 ntBASIC0.07□□□□□ -2.4
USP54Q70EL1 AC131235.4-201ENST00000609288 620 ntBASIC0.07□□□□□ -2.4
USP54Q70EL1 AC008250.2-201ENST00000615261 205 ntBASIC0.07□□□□□ -2.4
USP54Q70EL1 AP000943.4-201ENST00000622912 357 ntBASIC0.07□□□□□ -2.4
USP54Q70EL1 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.06□□□□□ -2.4
USP54Q70EL1 AL163973.1-201ENST00000484753 577 ntBASIC0.06□□□□□ -2.4
USP54Q70EL1 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC0.06□□□□□ -2.4
USP54Q70EL1 AC016632.1-201ENST00000503994 196 ntBASIC0.06□□□□□ -2.4
USP54Q70EL1 RNU6-758P-201ENST00000516292 89 ntBASIC0.06□□□□□ -2.4
USP54Q70EL1 AC011195.1-201ENST00000578177 177 ntBASIC0.06□□□□□ -2.4
USP54Q70EL1 MIR4753-201ENST00000585119 83 ntBASIC0.06□□□□□ -2.4
USP54Q70EL1 AL670729.3-201ENST00000602345 574 ntTSL 4 BASIC0.06□□□□□ -2.4
USP54Q70EL1 AL390123.1-201ENST00000603216 237 ntBASIC0.06□□□□□ -2.4
USP54Q70EL1 AC009994.1-201ENST00000606889 253 ntBASIC0.06□□□□□ -2.4
USP54Q70EL1 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC0.06□□□□□ -2.4
USP54Q70EL1 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC0.06□□□□□ -2.4
USP54Q70EL1 AL603839.4-201ENST00000624658 1005 ntBASIC0.06□□□□□ -2.4
USP54Q70EL1 Y_RNA.287-201ENST00000364853 94 ntBASIC0.05□□□□□ -2.4
USP54Q70EL1 RPL23AP50-201ENST00000434149 455 ntBASIC0.05□□□□□ -2.4
USP54Q70EL1 LINC00448-201ENST00000438352 402 ntTSL 3 BASIC0.05□□□□□ -2.4
USP54Q70EL1 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC0.05□□□□□ -2.4
USP54Q70EL1 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC0.05□□□□□ -2.4
USP54Q70EL1 AHI1-208ENST00000488690 712 ntTSL 5 BASIC0.05□□□□□ -2.4
USP54Q70EL1 AC008628.2-201ENST00000502605 298 ntBASIC0.05□□□□□ -2.4
USP54Q70EL1 AC116353.3-201ENST00000511215 249 ntBASIC0.05□□□□□ -2.4
USP54Q70EL1 AC027335.1-201ENST00000515377 543 ntTSL 4 BASIC0.05□□□□□ -2.4
USP54Q70EL1 AC123904.2-201ENST00000548059 300 ntBASIC0.05□□□□□ -2.4
USP54Q70EL1 AL163973.2-201ENST00000548096 288 ntTSL 3 BASIC0.05□□□□□ -2.4
USP54Q70EL1 MIR3118-1-201ENST00000581787 76 ntBASIC0.05□□□□□ -2.4
USP54Q70EL1 AP002360.4-201ENST00000606980 481 ntBASIC0.05□□□□□ -2.4
USP54Q70EL1 C8orf59-207ENST00000611854 563 ntAPPRIS P1 TSL 2 BASIC0.05□□□□□ -2.4
USP54Q70EL1 AL445523.1-201ENST00000451184 1362 ntBASIC0.05□□□□□ -2.4
USP54Q70EL1 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC0.05□□□□□ -2.4
USP54Q70EL1 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC0.05□□□□□ -2.4
USP54Q70EL1 SNORA2.2-201ENST00000365473 135 ntBASIC0.05□□□□□ -2.4
USP54Q70EL1 RNU6-975P-201ENST00000384296 105 ntBASIC0.05□□□□□ -2.4
USP54Q70EL1 RNA5SP109-201ENST00000391010 116 ntBASIC0.05□□□□□ -2.4
USP54Q70EL1 USP9YP11-201ENST00000427537 717 ntBASIC0.05□□□□□ -2.4
USP54Q70EL1 AC104332.1-201ENST00000440471 797 ntBASIC0.05□□□□□ -2.4
USP54Q70EL1 AC093019.1-201ENST00000443135 252 ntBASIC0.05□□□□□ -2.4
USP54Q70EL1 CNOT10-AS1-201ENST00000475395 466 ntTSL 3 BASIC0.05□□□□□ -2.4
USP54Q70EL1 AC108740.1-201ENST00000498629 225 ntBASIC0.05□□□□□ -2.4
USP54Q70EL1 AC025465.4-201ENST00000513422 638 ntBASIC0.05□□□□□ -2.4
USP54Q70EL1 SUB1P2-201ENST00000556401 297 ntBASIC0.05□□□□□ -2.4
USP54Q70EL1 AL391840.1-201ENST00000571144 367 ntBASIC0.05□□□□□ -2.4
USP54Q70EL1 AC078795.3-201ENST00000602913 472 ntBASIC0.05□□□□□ -2.4
USP54Q70EL1 AC080078.2-201ENST00000603766 501 ntBASIC0.05□□□□□ -2.4
USP54Q70EL1 SATB1-AS1-243ENST00000627546 589 ntTSL 5 BASIC0.05□□□□□ -2.4
USP54Q70EL1 MIR4315-1-201ENST00000636800 73 ntBASIC0.05□□□□□ -2.4
USP54Q70EL1 MIR4315-2-201ENST00000640925 73 ntBASIC0.05□□□□□ -2.4
USP54Q70EL1 RNU6-621P-201ENST00000364752 109 ntBASIC0.04□□□□□ -2.4
USP54Q70EL1 Y_RNA.330-201ENST00000365230 109 ntBASIC0.04□□□□□ -2.4
USP54Q70EL1 RNU6-1335P-201ENST00000365426 107 ntBASIC0.04□□□□□ -2.4
USP54Q70EL1 SNORA36.2-201ENST00000384004 127 ntBASIC0.04□□□□□ -2.4
USP54Q70EL1 RNU6-769P-201ENST00000384407 104 ntBASIC0.04□□□□□ -2.4
USP54Q70EL1 SNORD116-12-201ENST00000384468 92 ntBASIC0.04□□□□□ -2.4
USP54Q70EL1 RNU6-298P-201ENST00000390888 96 ntBASIC0.04□□□□□ -2.4
Retrieved 100 of 98,524 protein–RNA pairs in 104.7 ms