Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 AC008568.2-201ENST00000623862 2313 ntBASIC3.19□□□□□ -1.9
USP39Q53GS9 HERC5-203ENST00000508159 2243 ntTSL 2 BASIC3.19□□□□□ -1.9
USP39Q53GS9 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
USP39Q53GS9 AL109809.4-201ENST00000603520 2185 ntBASIC3.18□□□□□ -1.9
USP39Q53GS9 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.18□□□□□ -1.9
USP39Q53GS9 RNU1-70P-201ENST00000362618 164 ntBASIC3.18□□□□□ -1.9
USP39Q53GS9 RNA5SP383-201ENST00000362934 120 ntBASIC3.18□□□□□ -1.9
USP39Q53GS9 Y_RNA.81-201ENST00000362997 102 ntBASIC3.18□□□□□ -1.9
USP39Q53GS9 SNORD56.3-201ENST00000363507 71 ntBASIC3.18□□□□□ -1.9
USP39Q53GS9 SNORD115-8-201ENST00000363856 82 ntBASIC3.18□□□□□ -1.9
USP39Q53GS9 RNA5SP139-201ENST00000364340 117 ntBASIC3.18□□□□□ -1.9
USP39Q53GS9 Y_RNA.272-201ENST00000364696 102 ntBASIC3.18□□□□□ -1.9
USP39Q53GS9 SNORD115-38-201ENST00000365037 82 ntBASIC3.18□□□□□ -1.9
USP39Q53GS9 RNU6-805P-201ENST00000365643 106 ntBASIC3.18□□□□□ -1.9
USP39Q53GS9 RNU6-959P-201ENST00000384671 107 ntBASIC3.18□□□□□ -1.9
USP39Q53GS9 SNORD15B-201ENST00000384714 146 ntBASIC3.18□□□□□ -1.9
USP39Q53GS9 RNA5SP293-201ENST00000410527 113 ntBASIC3.18□□□□□ -1.9
USP39Q53GS9 RNU6-735P-201ENST00000410612 107 ntBASIC3.18□□□□□ -1.9
USP39Q53GS9 AC078851.1-201ENST00000415918 298 ntTSL 3 BASIC3.18□□□□□ -1.9
USP39Q53GS9 AL590383.1-201ENST00000428602 75 ntBASIC3.18□□□□□ -1.9
USP39Q53GS9 IFNA11P-201ENST00000446352 526 ntBASIC3.18□□□□□ -1.9
USP39Q53GS9 MTATP6P7-201ENST00000453315 681 ntBASIC3.18□□□□□ -1.9
USP39Q53GS9 AL031183.1-201ENST00000457667 207 ntBASIC3.18□□□□□ -1.9
USP39Q53GS9 AC020895.1-201ENST00000595362 272 ntBASIC3.18□□□□□ -1.9
USP39Q53GS9 AC022441.3-201ENST00000605737 136 ntBASIC3.18□□□□□ -1.9
USP39Q53GS9 NPPA-AS1_3.1-201ENST00000617059 108 ntBASIC3.18□□□□□ -1.9
USP39Q53GS9 HDX-201ENST00000297977 6200 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
USP39Q53GS9 FAM214A-201ENST00000261844 4217 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
USP39Q53GS9 SNORA36A-201ENST00000384221 132 ntBASIC3.17□□□□□ -1.9
USP39Q53GS9 SNORD116-20-201ENST00000384529 92 ntBASIC3.17□□□□□ -1.9
USP39Q53GS9 RNU6-658P-201ENST00000384606 106 ntBASIC3.17□□□□□ -1.9
USP39Q53GS9 RNA5SP252-201ENST00000391131 119 ntBASIC3.17□□□□□ -1.9
USP39Q53GS9 RNU6-131P-201ENST00000391144 107 ntBASIC3.17□□□□□ -1.9
USP39Q53GS9 AL512844.2-201ENST00000433990 593 ntBASIC3.17□□□□□ -1.9
USP39Q53GS9 AC125238.1-201ENST00000448842 249 ntBASIC3.17□□□□□ -1.9
USP39Q53GS9 AP000705.1-201ENST00000454567 350 ntBASIC3.17□□□□□ -1.9
USP39Q53GS9 AC006026.2-201ENST00000457376 180 ntBASIC3.17□□□□□ -1.9
USP39Q53GS9 RN7SL429P-201ENST00000479090 223 ntBASIC3.17□□□□□ -1.9
USP39Q53GS9 RN7SL489P-201ENST00000486185 223 ntBASIC3.17□□□□□ -1.9
USP39Q53GS9 RN7SL327P-201ENST00000488659 223 ntBASIC3.17□□□□□ -1.9
USP39Q53GS9 LNX1-AS1-203ENST00000511989 488 ntTSL 2 BASIC3.17□□□□□ -1.9
USP39Q53GS9 RNU1-143P-201ENST00000516296 146 ntBASIC3.17□□□□□ -1.9
USP39Q53GS9 RNU6-479P-201ENST00000516348 105 ntBASIC3.17□□□□□ -1.9
USP39Q53GS9 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC3.17□□□□□ -1.9
USP39Q53GS9 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC3.17□□□□□ -1.9
USP39Q53GS9 MIR5692C2-201ENST00000577959 77 ntBASIC3.17□□□□□ -1.9
USP39Q53GS9 AC005176.2-201ENST00000596933 147 ntBASIC3.17□□□□□ -1.9
USP39Q53GS9 AL356157.2-201ENST00000605122 111 ntBASIC3.17□□□□□ -1.9
USP39Q53GS9 U1.23-201ENST00000610293 146 ntBASIC3.17□□□□□ -1.9
USP39Q53GS9 FTX_3.1-201ENST00000610451 147 ntBASIC3.17□□□□□ -1.9
USP39Q53GS9 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC3.17□□□□□ -1.9
USP39Q53GS9 RNU1-68P-201ENST00000615382 146 ntBASIC3.17□□□□□ -1.9
USP39Q53GS9 RN7SL853P-201ENST00000617250 223 ntBASIC3.17□□□□□ -1.9
USP39Q53GS9 AC024581.2-201ENST00000619986 252 ntBASIC3.17□□□□□ -1.9
USP39Q53GS9 U1.39-201ENST00000621562 146 ntBASIC3.17□□□□□ -1.9
USP39Q53GS9 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.17□□□□□ -1.9
USP39Q53GS9 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.17□□□□□ -1.9
USP39Q53GS9 N4BP2L2-211ENST00000504114 2513 ntTSL 5 BASIC3.17□□□□□ -1.9
USP39Q53GS9 AP003122.5-201ENST00000527668 3766 ntBASIC3.16□□□□□ -1.9
USP39Q53GS9 Y_RNA.262-201ENST00000364641 102 ntBASIC3.16□□□□□ -1.9
USP39Q53GS9 RNU1-100P-201ENST00000365255 165 ntBASIC3.16□□□□□ -1.9
USP39Q53GS9 SNORD116-18-201ENST00000383961 92 ntBASIC3.16□□□□□ -1.9
USP39Q53GS9 RNU6-142P-201ENST00000384019 107 ntBASIC3.16□□□□□ -1.9
USP39Q53GS9 RNU6-217P-201ENST00000384164 104 ntBASIC3.16□□□□□ -1.9
USP39Q53GS9 RNU6-301P-201ENST00000384277 107 ntBASIC3.16□□□□□ -1.9
USP39Q53GS9 AC074117.2-201ENST00000417130 397 ntBASIC3.16□□□□□ -1.9
USP39Q53GS9 AC024067.1-201ENST00000426199 223 ntBASIC3.16□□□□□ -1.9
USP39Q53GS9 AL358075.3-201ENST00000426289 226 ntBASIC3.16□□□□□ -1.9
USP39Q53GS9 NDUFB4P6-201ENST00000436819 366 ntBASIC3.16□□□□□ -1.9
USP39Q53GS9 CST9LP2-201ENST00000437612 320 ntBASIC3.16□□□□□ -1.9
USP39Q53GS9 AC010095.1-201ENST00000443543 144 ntBASIC3.16□□□□□ -1.9
USP39Q53GS9 AC013248.1-201ENST00000455092 232 ntTSL 3 BASIC3.16□□□□□ -1.9
USP39Q53GS9 RPS29P12-201ENST00000460178 152 ntBASIC3.16□□□□□ -1.9
USP39Q53GS9 AC092185.1-201ENST00000491371 97 ntBASIC3.16□□□□□ -1.9
USP39Q53GS9 RNU6-191P-201ENST00000516295 94 ntBASIC3.16□□□□□ -1.9
USP39Q53GS9 AP005660.1-201ENST00000522972 293 ntBASIC3.16□□□□□ -1.9
USP39Q53GS9 AC087518.1-201ENST00000524098 187 ntTSL 3 BASIC3.16□□□□□ -1.9
USP39Q53GS9 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.16□□□□□ -1.9
USP39Q53GS9 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
USP39Q53GS9 CR383656.8-201ENST00000549046 145 ntBASIC3.16□□□□□ -1.9
USP39Q53GS9 MIR4672-201ENST00000583126 81 ntBASIC3.16□□□□□ -1.9
USP39Q53GS9 MIR6134-201ENST00000617606 109 ntBASIC3.16□□□□□ -1.9
USP39Q53GS9 snoU18.1-201ENST00000629629 71 ntBASIC3.16□□□□□ -1.9
USP39Q53GS9 STAU2-201ENST00000355780 4061 ntTSL 1 (best) BASIC3.16□□□□□ -1.9
USP39Q53GS9 BCLAF1P1-201ENST00000505813 2752 ntBASIC3.16□□□□□ -1.9
USP39Q53GS9 RTKN2-202ENST00000373789 6641 ntAPPRIS P1 TSL 1 (best) BASIC3.15□□□□□ -1.91
USP39Q53GS9 DMD-203ENST00000357033 13956 ntAPPRIS P3 TSL 1 (best) BASIC3.15□□□□□ -1.91
USP39Q53GS9 SNORD56.1-201ENST00000362913 68 ntBASIC3.15□□□□□ -1.91
USP39Q53GS9 RNU4-56P-201ENST00000364700 142 ntBASIC3.15□□□□□ -1.91
USP39Q53GS9 RNU6-211P-201ENST00000384047 107 ntBASIC3.15□□□□□ -1.91
USP39Q53GS9 Y_RNA.568-201ENST00000384742 113 ntBASIC3.15□□□□□ -1.91
USP39Q53GS9 RN7SKP220-201ENST00000410611 288 ntBASIC3.15□□□□□ -1.91
USP39Q53GS9 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.15□□□□□ -1.91
USP39Q53GS9 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC3.15□□□□□ -1.91
USP39Q53GS9 AC126121.2-201ENST00000486137 698 ntTSL 3 BASIC3.15□□□□□ -1.91
USP39Q53GS9 AC140059.1-201ENST00000489238 361 ntBASIC3.15□□□□□ -1.91
USP39Q53GS9 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC3.15□□□□□ -1.91
USP39Q53GS9 HMGB3P3-201ENST00000510526 400 ntBASIC3.15□□□□□ -1.91
USP39Q53GS9 SUMO2P18-201ENST00000518873 252 ntBASIC3.15□□□□□ -1.91
USP39Q53GS9 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC3.15□□□□□ -1.91
Retrieved 100 of 98,524 protein–RNA pairs in 10.2 ms