Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 FABP5P4-201ENST00000437203 171 ntBASIC-0.06□□□□□ -2.42
CHD9Q3L8U1 AL606517.2-201ENST00000442855 241 ntBASIC-0.06□□□□□ -2.42
CHD9Q3L8U1 MTND5P2-201ENST00000442927 1142 ntBASIC-0.06□□□□□ -2.42
CHD9Q3L8U1 AC009237.7-201ENST00000447357 229 ntBASIC-0.06□□□□□ -2.42
CHD9Q3L8U1 SPINT5P-201ENST00000448174 155 ntBASIC-0.06□□□□□ -2.42
CHD9Q3L8U1 AL122001.1-201ENST00000457027 370 ntBASIC-0.06□□□□□ -2.42
CHD9Q3L8U1 XACT-201ENST00000468762 497 ntTSL 5 BASIC-0.06□□□□□ -2.42
CHD9Q3L8U1 OR9P1P-201ENST00000496431 281 ntBASIC-0.06□□□□□ -2.42
CHD9Q3L8U1 RNU6-583P-201ENST00000516012 92 ntBASIC-0.06□□□□□ -2.42
CHD9Q3L8U1 RNU6-1315P-201ENST00000517187 99 ntBASIC-0.06□□□□□ -2.42
CHD9Q3L8U1 AP003086.2-201ENST00000534168 437 ntTSL 3 BASIC-0.06□□□□□ -2.42
CHD9Q3L8U1 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC-0.06□□□□□ -2.42
CHD9Q3L8U1 AL157871.3-201ENST00000557231 293 ntBASIC-0.06□□□□□ -2.42
CHD9Q3L8U1 AL929325.1-201ENST00000603096 117 ntBASIC-0.06□□□□□ -2.42
CHD9Q3L8U1 MIR8054-201ENST00000620877 86 ntBASIC-0.06□□□□□ -2.42
CHD9Q3L8U1 MIR19A-201ENST00000384878 82 ntBASIC-0.07□□□□□ -2.42
CHD9Q3L8U1 TRAJ54-201ENST00000390484 60 ntAPPRIS P1 BASIC-0.07□□□□□ -2.42
CHD9Q3L8U1 RNA5SP323-201ENST00000391094 133 ntBASIC-0.07□□□□□ -2.42
CHD9Q3L8U1 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC-0.07□□□□□ -2.42
CHD9Q3L8U1 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC-0.07□□□□□ -2.42
CHD9Q3L8U1 LINC00571-203ENST00000454060 525 ntTSL 3 BASIC-0.07□□□□□ -2.42
CHD9Q3L8U1 AC233266.1-201ENST00000454518 96 ntBASIC-0.07□□□□□ -2.42
CHD9Q3L8U1 snoU13.27-201ENST00000459278 104 ntBASIC-0.07□□□□□ -2.42
CHD9Q3L8U1 snoU109.2-201ENST00000459316 135 ntBASIC-0.07□□□□□ -2.42
CHD9Q3L8U1 RNU7-140P-201ENST00000459546 60 ntBASIC-0.07□□□□□ -2.42
CHD9Q3L8U1 HMGN1P12-201ENST00000499125 195 ntBASIC-0.07□□□□□ -2.42
CHD9Q3L8U1 CCNG1-203ENST00000504553 732 ntTSL 3 BASIC-0.07□□□□□ -2.42
CHD9Q3L8U1 SNORA25.12-201ENST00000516202 82 ntBASIC-0.07□□□□□ -2.42
CHD9Q3L8U1 MIR4742-201ENST00000581069 85 ntBASIC-0.07□□□□□ -2.42
CHD9Q3L8U1 AC242852.1-201ENST00000612151 96 ntBASIC-0.07□□□□□ -2.42
CHD9Q3L8U1 AC116165.2-201ENST00000616705 206 ntBASIC-0.07□□□□□ -2.42
CHD9Q3L8U1 AC244015.1-201ENST00000622301 99 ntBASIC-0.07□□□□□ -2.42
CHD9Q3L8U1 MTND5P42-201ENST00000637720 498 ntBASIC-0.07□□□□□ -2.42
CHD9Q3L8U1 AL589740.1-207ENST00000607823 1962 ntTSL 5 BASIC-0.07□□□□□ -2.42
CHD9Q3L8U1 AP000568.1-201ENST00000282964 442 ntBASIC-0.07□□□□□ -2.42
CHD9Q3L8U1 RNU6-575P-201ENST00000411326 105 ntBASIC-0.07□□□□□ -2.42
CHD9Q3L8U1 AC096531.1-201ENST00000419107 107 ntBASIC-0.07□□□□□ -2.42
CHD9Q3L8U1 AC007969.2-201ENST00000441891 191 ntBASIC-0.07□□□□□ -2.42
CHD9Q3L8U1 AC079943.1-201ENST00000491909 466 ntTSL 3 BASIC-0.07□□□□□ -2.42
CHD9Q3L8U1 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC-0.07□□□□□ -2.42
CHD9Q3L8U1 RNA5SP227-201ENST00000516184 113 ntBASIC-0.07□□□□□ -2.42
CHD9Q3L8U1 Y_RNA.687-201ENST00000516558 91 ntBASIC-0.07□□□□□ -2.42
CHD9Q3L8U1 MTCO3P15-201ENST00000526563 574 ntBASIC-0.07□□□□□ -2.42
CHD9Q3L8U1 AC012404.2-201ENST00000558572 481 ntTSL 3 BASIC-0.07□□□□□ -2.42
CHD9Q3L8U1 AC106754.2-201ENST00000623006 233 ntBASIC-0.07□□□□□ -2.42
CHD9Q3L8U1 AC097460.3-201ENST00000623099 442 ntBASIC-0.07□□□□□ -2.42
CHD9Q3L8U1 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC-0.07□□□□□ -2.42
CHD9Q3L8U1 SNORD56.1-201ENST00000362913 68 ntBASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 MIR578-201ENST00000384828 96 ntBASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 MIR549A-201ENST00000385268 96 ntBASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 SNORA16.2-201ENST00000390991 127 ntBASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 RNA5SP390-201ENST00000410191 113 ntBASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 RNU6-1025P-201ENST00000410629 104 ntBASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 AL355674.1-201ENST00000423681 648 ntTSL 1 (best) BASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 GXYLT1P1-201ENST00000446657 490 ntBASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 RNU7-159P-201ENST00000459284 62 ntBASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 AL163973.1-201ENST00000484753 577 ntBASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 SNORA40.12-201ENST00000516329 111 ntBASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 RNU6-948P-201ENST00000516374 107 ntBASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 AC104073.3-201ENST00000610942 955 ntBASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 RNU5E-6P-201ENST00000365574 115 ntBASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 SMIM11P1-201ENST00000369586 178 ntBASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 MIR891A-201ENST00000401237 79 ntBASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 AP000473.1-201ENST00000413645 550 ntTSL 3 BASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 BX005214.1-201ENST00000427327 476 ntTSL 5 BASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 AC073910.1-201ENST00000445047 438 ntBASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 NDUFB1P2-201ENST00000449477 176 ntBASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 AC010531.2-201ENST00000465012 153 ntBASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 RNA5SP180-201ENST00000516181 101 ntBASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 Y_RNA.711-201ENST00000516993 102 ntBASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 MTND2P7-201ENST00000521337 640 ntBASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 AC090531.1-202ENST00000548450 499 ntTSL 3 BASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 AC138869.1-201ENST00000568623 124 ntBASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 AC127540.1-201ENST00000580311 689 ntTSL 5 BASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 AC008764.5-201ENST00000597851 190 ntTSL 5 BASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 AC069545.1-201ENST00000605671 358 ntBASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 ZRANB2-AS2-218ENST00000608360 722 ntTSL 5 BASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 AL355073.2-201ENST00000612106 557 ntBASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 AL359075.3-201ENST00000613288 217 ntBASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 AC005520.5-201ENST00000613926 164 ntBASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 AL590491.2-201ENST00000614608 499 ntTSL 5 BASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 AL591926.4-201ENST00000616895 298 ntBASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 AC099654.8-201ENST00000637757 681 ntBASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 MIR196A2-201ENST00000385189 110 ntBASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 SNORD71-201ENST00000411292 86 ntBASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 AL136320.1-201ENST00000417273 430 ntTSL 3 BASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 AC113410.1-201ENST00000505029 247 ntBASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 EPGN-208ENST00000509145 222 ntTSL 1 (best) BASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 RNU2-34P-201ENST00000516534 121 ntBASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 OR8K2P-201ENST00000524645 927 ntBASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 AL356157.2-201ENST00000605122 111 ntBASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 MIR6755-201ENST00000619993 66 ntBASIC-0.08□□□□□ -2.42
CHD9Q3L8U1 AL078595.3-201ENST00000623815 1166 ntBASIC-0.08□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 103.7 ms