Protein–RNA interactions for Protein: P43489

TNFRSF4, Tumor necrosis factor receptor superfamily member 4, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF4P43489 MIR8076-201ENST00000611401 83 ntBASIC1.84□□□□□ -2.11
TNFRSF4P43489 PCGEM1.1-201ENST00000613431 131 ntBASIC1.84□□□□□ -2.11
TNFRSF4P43489 WT1-AS_8.1-201ENST00000615200 275 ntBASIC1.84□□□□□ -2.11
TNFRSF4P43489 SNORA43.4-201ENST00000629559 138 ntBASIC1.84□□□□□ -2.11
TNFRSF4P43489 TPTEP1-208ENST00000636884 213 ntBASIC1.84□□□□□ -2.11
TNFRSF4P43489 AL450472.1-202ENST00000637286 180 ntBASIC1.84□□□□□ -2.11
TNFRSF4P43489 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.84□□□□□ -2.11
TNFRSF4P43489 AC233981.2-201ENST00000611524 1614 ntBASIC1.84□□□□□ -2.12
TNFRSF4P43489 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
TNFRSF4P43489 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC1.83□□□□□ -2.12
TNFRSF4P43489 RNU6-1164P-201ENST00000364428 107 ntBASIC1.83□□□□□ -2.12
TNFRSF4P43489 Y_RNA.303-201ENST00000364998 94 ntBASIC1.83□□□□□ -2.12
TNFRSF4P43489 SNORD81.2-201ENST00000365153 76 ntBASIC1.83□□□□□ -2.12
TNFRSF4P43489 SNORA36A-201ENST00000384221 132 ntBASIC1.83□□□□□ -2.12
TNFRSF4P43489 Y_RNA.595-201ENST00000410403 105 ntBASIC1.83□□□□□ -2.12
TNFRSF4P43489 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.83□□□□□ -2.12
TNFRSF4P43489 RPL23AP36-201ENST00000413895 458 ntBASIC1.83□□□□□ -2.12
TNFRSF4P43489 AL158823.1-201ENST00000418441 478 ntBASIC1.83□□□□□ -2.12
TNFRSF4P43489 RPS3AP52-201ENST00000435639 297 ntBASIC1.83□□□□□ -2.12
TNFRSF4P43489 DAP3P1-201ENST00000441522 278 ntBASIC1.83□□□□□ -2.12
TNFRSF4P43489 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC1.83□□□□□ -2.12
TNFRSF4P43489 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.83□□□□□ -2.12
TNFRSF4P43489 MTND5P5-201ENST00000503764 376 ntBASIC1.83□□□□□ -2.12
TNFRSF4P43489 MIR4498-201ENST00000577599 66 ntBASIC1.83□□□□□ -2.12
TNFRSF4P43489 CPDP1-201ENST00000579660 283 ntBASIC1.83□□□□□ -2.12
TNFRSF4P43489 CYP2C61P-201ENST00000604072 290 ntBASIC1.83□□□□□ -2.12
TNFRSF4P43489 AC022306.2-201ENST00000617563 647 ntBASIC1.83□□□□□ -2.12
TNFRSF4P43489 AC130454.1-201ENST00000622948 401 ntBASIC1.83□□□□□ -2.12
TNFRSF4P43489 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC1.83□□□□□ -2.12
TNFRSF4P43489 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.83□□□□□ -2.12
TNFRSF4P43489 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.82□□□□□ -2.12
TNFRSF4P43489 Y_RNA.166-201ENST00000363730 102 ntBASIC1.82□□□□□ -2.12
TNFRSF4P43489 DEFB134-201ENST00000382205 314 ntAPPRIS P1 TSL 1 (best) BASIC1.82□□□□□ -2.12
TNFRSF4P43489 RNU6-968P-201ENST00000384076 107 ntBASIC1.82□□□□□ -2.12
TNFRSF4P43489 RNU6-160P-201ENST00000384591 107 ntBASIC1.82□□□□□ -2.12
TNFRSF4P43489 MIR597-201ENST00000384968 97 ntBASIC1.82□□□□□ -2.12
TNFRSF4P43489 SNORA17.3-201ENST00000391159 129 ntBASIC1.82□□□□□ -2.12
TNFRSF4P43489 MIR208B-201ENST00000401172 77 ntBASIC1.82□□□□□ -2.12
TNFRSF4P43489 AC074085.1-201ENST00000413598 418 ntBASIC1.82□□□□□ -2.12
TNFRSF4P43489 MTND4LP11-201ENST00000422184 280 ntBASIC1.82□□□□□ -2.12
TNFRSF4P43489 AC012306.1-201ENST00000423267 114 ntBASIC1.82□□□□□ -2.12
TNFRSF4P43489 RPL23AP6-201ENST00000446637 472 ntBASIC1.82□□□□□ -2.12
TNFRSF4P43489 HMGN2P18-201ENST00000450680 270 ntBASIC1.82□□□□□ -2.12
TNFRSF4P43489 RN7SKP210-201ENST00000459176 261 ntBASIC1.82□□□□□ -2.12
TNFRSF4P43489 MTND4P17-201ENST00000470444 350 ntBASIC1.82□□□□□ -2.12
TNFRSF4P43489 RPS29P11-201ENST00000496507 171 ntBASIC1.82□□□□□ -2.12
TNFRSF4P43489 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC1.82□□□□□ -2.12
TNFRSF4P43489 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.82□□□□□ -2.12
TNFRSF4P43489 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.82□□□□□ -2.12
TNFRSF4P43489 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
TNFRSF4P43489 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC1.82□□□□□ -2.12
TNFRSF4P43489 AC016256.1-201ENST00000547971 354 ntBASIC1.82□□□□□ -2.12
TNFRSF4P43489 EIF4A1P12-201ENST00000551910 141 ntBASIC1.82□□□□□ -2.12
TNFRSF4P43489 MIR4299-201ENST00000577899 72 ntBASIC1.82□□□□□ -2.12
TNFRSF4P43489 MIR502-201ENST00000606349 86 ntBASIC1.82□□□□□ -2.12
TNFRSF4P43489 AL627230.6-201ENST00000611129 280 ntBASIC1.82□□□□□ -2.12
TNFRSF4P43489 U1.36-201ENST00000620684 176 ntBASIC1.82□□□□□ -2.12
TNFRSF4P43489 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.82□□□□□ -2.12
TNFRSF4P43489 ST7-AS2-206ENST00000456577 1351 ntTSL 1 (best) BASIC1.82□□□□□ -2.12
TNFRSF4P43489 Y_RNA.88-201ENST00000363029 99 ntBASIC1.81□□□□□ -2.12
TNFRSF4P43489 RNU6-23P-201ENST00000363283 107 ntBASIC1.81□□□□□ -2.12
TNFRSF4P43489 RNY3P14-201ENST00000384309 102 ntBASIC1.81□□□□□ -2.12
TNFRSF4P43489 RNU6-378P-201ENST00000384324 107 ntBASIC1.81□□□□□ -2.12
TNFRSF4P43489 RNU6-601P-201ENST00000384540 107 ntBASIC1.81□□□□□ -2.12
TNFRSF4P43489 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
TNFRSF4P43489 SNORA67.5-201ENST00000391036 107 ntBASIC1.81□□□□□ -2.12
TNFRSF4P43489 MIR548K-201ENST00000408406 116 ntBASIC1.81□□□□□ -2.12
TNFRSF4P43489 RPL37P10-201ENST00000412884 288 ntBASIC1.81□□□□□ -2.12
TNFRSF4P43489 KRTAP25-1-201ENST00000416044 370 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
TNFRSF4P43489 SNORD13-201ENST00000459299 104 ntBASIC1.81□□□□□ -2.12
TNFRSF4P43489 AC021146.2-201ENST00000504736 556 ntBASIC1.81□□□□□ -2.12
TNFRSF4P43489 MIR514B-201ENST00000516774 80 ntBASIC1.81□□□□□ -2.12
TNFRSF4P43489 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.81□□□□□ -2.12
TNFRSF4P43489 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC1.81□□□□□ -2.12
TNFRSF4P43489 PRELID2P1-201ENST00000552837 301 ntBASIC1.81□□□□□ -2.12
TNFRSF4P43489 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC1.81□□□□□ -2.12
TNFRSF4P43489 UBE2V2P2-201ENST00000587677 504 ntBASIC1.81□□□□□ -2.12
TNFRSF4P43489 AL109918.3-201ENST00000603072 338 ntBASIC1.81□□□□□ -2.12
TNFRSF4P43489 MIR8081-201ENST00000611533 95 ntBASIC1.81□□□□□ -2.12
TNFRSF4P43489 AL355073.2-201ENST00000612106 557 ntBASIC1.81□□□□□ -2.12
TNFRSF4P43489 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC1.81□□□□□ -2.12
TNFRSF4P43489 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC1.81□□□□□ -2.12
TNFRSF4P43489 RNU6-1059P-201ENST00000363752 98 ntBASIC1.8□□□□□ -2.12
TNFRSF4P43489 SNORA16.1-201ENST00000364597 132 ntBASIC1.8□□□□□ -2.12
TNFRSF4P43489 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
TNFRSF4P43489 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.8□□□□□ -2.12
TNFRSF4P43489 AL356432.1-201ENST00000405809 419 ntBASIC1.8□□□□□ -2.12
TNFRSF4P43489 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC1.8□□□□□ -2.12
TNFRSF4P43489 USP9YP30-201ENST00000430729 455 ntBASIC1.8□□□□□ -2.12
TNFRSF4P43489 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC1.8□□□□□ -2.12
TNFRSF4P43489 MTND5P20-201ENST00000448677 143 ntBASIC1.8□□□□□ -2.12
TNFRSF4P43489 RNU6-717P-201ENST00000459076 104 ntBASIC1.8□□□□□ -2.12
TNFRSF4P43489 RNU6-1016P-201ENST00000516689 94 ntBASIC1.8□□□□□ -2.12
TNFRSF4P43489 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC1.8□□□□□ -2.12
TNFRSF4P43489 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC1.8□□□□□ -2.12
TNFRSF4P43489 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC1.8□□□□□ -2.12
TNFRSF4P43489 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC1.8□□□□□ -2.12
TNFRSF4P43489 RPL17P51-201ENST00000605218 238 ntBASIC1.8□□□□□ -2.12
TNFRSF4P43489 AC005520.5-201ENST00000613926 164 ntBASIC1.8□□□□□ -2.12
TNFRSF4P43489 AL773524.1-201ENST00000614065 229 ntBASIC1.8□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 174.8 ms