Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 MT-ND5-201ENST00000361567 1812 ntAPPRIS P1 BASIC3.07□□□□□ -1.92
MSX2P35548 ANKRD30BP1-201ENST00000451052 2186 ntBASIC3.07□□□□□ -1.92
MSX2P35548 MUC7-202ENST00000413702 2540 ntAPPRIS P2 TSL 4 BASIC3.07□□□□□ -1.92
MSX2P35548 DOCK7-202ENST00000340370 6731 ntAPPRIS P3 TSL 2 BASIC3.06□□□□□ -1.92
MSX2P35548 MANEA-201ENST00000358812 4575 ntAPPRIS P1 TSL 1 (best) BASIC3.06□□□□□ -1.92
MSX2P35548 RNU6-704P-201ENST00000364162 103 ntBASIC3.06□□□□□ -1.92
MSX2P35548 Y_RNA.291-201ENST00000364886 113 ntBASIC3.06□□□□□ -1.92
MSX2P35548 RNU6-211P-201ENST00000384047 107 ntBASIC3.06□□□□□ -1.92
MSX2P35548 MIR613-201ENST00000385248 95 ntBASIC3.06□□□□□ -1.92
MSX2P35548 U3.26-201ENST00000391236 204 ntBASIC3.06□□□□□ -1.92
MSX2P35548 RNA5SP354-201ENST00000391247 136 ntBASIC3.06□□□□□ -1.92
MSX2P35548 AL451074.5-201ENST00000415894 435 ntBASIC3.06□□□□□ -1.92
MSX2P35548 AC009414.1-201ENST00000427200 443 ntBASIC3.06□□□□□ -1.92
MSX2P35548 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC3.06□□□□□ -1.92
MSX2P35548 AL353705.1-201ENST00000433468 480 ntBASIC3.06□□□□□ -1.92
MSX2P35548 RPS15AP5-201ENST00000436276 388 ntBASIC3.06□□□□□ -1.92
MSX2P35548 UQCRHP3-201ENST00000451503 251 ntBASIC3.06□□□□□ -1.92
MSX2P35548 RAC1P5-201ENST00000512182 576 ntBASIC3.06□□□□□ -1.92
MSX2P35548 AC025281.1-201ENST00000567026 265 ntBASIC3.06□□□□□ -1.92
MSX2P35548 MIR5692C2-201ENST00000577959 77 ntBASIC3.06□□□□□ -1.92
MSX2P35548 AC015911.6-201ENST00000588445 457 ntTSL 3 BASIC3.06□□□□□ -1.92
MSX2P35548 AC004832.5-201ENST00000608677 401 ntBASIC3.06□□□□□ -1.92
MSX2P35548 AC008264.2-201ENST00000610193 3731 ntBASIC3.06□□□□□ -1.92
MSX2P35548 AC104465.1-201ENST00000611365 139 ntBASIC3.06□□□□□ -1.92
MSX2P35548 AC084757.4-201ENST00000616350 526 ntBASIC3.06□□□□□ -1.92
MSX2P35548 AC012314.7-201ENST00000619693 93 ntBASIC3.06□□□□□ -1.92
MSX2P35548 AL365265.1-201ENST00000621045 234 ntBASIC3.06□□□□□ -1.92
MSX2P35548 AC004944.1-201ENST00000517807 3059 ntBASIC3.06□□□□□ -1.92
MSX2P35548 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC3.05□□□□□ -1.92
MSX2P35548 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC3.05□□□□□ -1.92
MSX2P35548 RNU4-35P-201ENST00000362588 141 ntBASIC3.05□□□□□ -1.92
MSX2P35548 RNU1-62P-201ENST00000362599 164 ntBASIC3.05□□□□□ -1.92
MSX2P35548 Y_RNA.40-201ENST00000362645 93 ntBASIC3.05□□□□□ -1.92
MSX2P35548 Y_RNA.262-201ENST00000364641 102 ntBASIC3.05□□□□□ -1.92
MSX2P35548 RNU4-56P-201ENST00000364700 142 ntBASIC3.05□□□□□ -1.92
MSX2P35548 SNORD50.2-201ENST00000365465 70 ntBASIC3.05□□□□□ -1.92
MSX2P35548 Y_RNA.398-201ENST00000383952 99 ntBASIC3.05□□□□□ -1.92
MSX2P35548 Y_RNA.441-201ENST00000384123 112 ntBASIC3.05□□□□□ -1.92
MSX2P35548 MIR208B-201ENST00000401172 77 ntBASIC3.05□□□□□ -1.92
MSX2P35548 CBX3P9-201ENST00000402326 552 ntBASIC3.05□□□□□ -1.92
MSX2P35548 RNU2-54P-201ENST00000410299 190 ntBASIC3.05□□□□□ -1.92
MSX2P35548 KCNJ6-AS1-201ENST00000435001 357 ntTSL 5 BASIC3.05□□□□□ -1.92
MSX2P35548 FCF1P8-201ENST00000510322 597 ntBASIC3.05□□□□□ -1.92
MSX2P35548 AC104393.1-201ENST00000517495 255 ntTSL 3 BASIC3.05□□□□□ -1.92
MSX2P35548 AL161756.2-201ENST00000604597 246 ntBASIC3.05□□□□□ -1.92
MSX2P35548 AL008718.3-201ENST00000610217 321 ntBASIC3.05□□□□□ -1.92
MSX2P35548 TTC28-AS1_2.1-201ENST00000611117 157 ntBASIC3.05□□□□□ -1.92
MSX2P35548 AC019176.2-201ENST00000611579 315 ntBASIC3.05□□□□□ -1.92
MSX2P35548 AC002064.3-201ENST00000623448 346 ntBASIC3.05□□□□□ -1.92
MSX2P35548 PCDH11Y-201ENST00000215473 4595 ntAPPRIS ALT2 TSL 1 (best) BASIC3.05□□□□□ -1.92
MSX2P35548 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.05□□□□□ -1.92
MSX2P35548 AC092593.1-201ENST00000515413 1815 ntBASIC3.05□□□□□ -1.92
MSX2P35548 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC3.04□□□□□ -1.92
MSX2P35548 PHTF2-201ENST00000248550 4778 ntTSL 1 (best) BASIC3.04□□□□□ -1.92
MSX2P35548 FNBP1L-203ENST00000370253 3889 ntAPPRIS ALT1 TSL 5 BASIC3.04□□□□□ -1.92
MSX2P35548 RNU6-1272P-201ENST00000362776 107 ntBASIC3.04□□□□□ -1.92
MSX2P35548 RNU6-727P-201ENST00000363592 107 ntBASIC3.04□□□□□ -1.92
MSX2P35548 MS4A4E-202ENST00000398986 522 ntAPPRIS P1 TSL 5 BASIC3.04□□□□□ -1.92
MSX2P35548 AL133475.1-201ENST00000404414 305 ntBASIC3.04□□□□□ -1.92
MSX2P35548 AC009963.1-201ENST00000417265 157 ntBASIC3.04□□□□□ -1.92
MSX2P35548 AC024067.1-201ENST00000426199 223 ntBASIC3.04□□□□□ -1.92
MSX2P35548 PTGES3P4-201ENST00000426243 356 ntBASIC3.04□□□□□ -1.92
MSX2P35548 AC244505.4-201ENST00000434905 287 ntBASIC3.04□□□□□ -1.92
MSX2P35548 SSXP5-201ENST00000443473 287 ntBASIC3.04□□□□□ -1.92
MSX2P35548 PRSS3P4-201ENST00000453323 162 ntBASIC3.04□□□□□ -1.92
MSX2P35548 RPS29P12-201ENST00000460178 152 ntBASIC3.04□□□□□ -1.92
MSX2P35548 AC103975.1-201ENST00000482506 483 ntBASIC3.04□□□□□ -1.92
MSX2P35548 AC105389.2-201ENST00000506475 435 ntTSL 3 BASIC3.04□□□□□ -1.92
MSX2P35548 RNU6-155P-201ENST00000516347 100 ntBASIC3.04□□□□□ -1.92
MSX2P35548 SNORD19.2-201ENST00000516978 73 ntBASIC3.04□□□□□ -1.92
MSX2P35548 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC3.04□□□□□ -1.92
MSX2P35548 CARD18-203ENST00000532895 422 ntTSL 2 BASIC3.04□□□□□ -1.92
MSX2P35548 AC006504.5-204ENST00000592404 765 ntTSL 3 BASIC3.04□□□□□ -1.92
MSX2P35548 DEFB117-201ENST00000602356 141 ntBASIC3.04□□□□□ -1.92
MSX2P35548 AC108706.1-201ENST00000611053 297 ntBASIC3.04□□□□□ -1.92
MSX2P35548 AL034408.1-202ENST00000636088 415 ntBASIC3.04□□□□□ -1.92
MSX2P35548 MIR3674-201ENST00000636576 68 ntBASIC3.04□□□□□ -1.92
MSX2P35548 MKLN1-201ENST00000352689 11156 ntAPPRIS P1 TSL 1 (best) BASIC3.04□□□□□ -1.92
MSX2P35548 Y_RNA.8-201ENST00000362353 102 ntBASIC3.03□□□□□ -1.92
MSX2P35548 RNU6-529P-201ENST00000363383 104 ntBASIC3.03□□□□□ -1.92
MSX2P35548 RNU6-748P-201ENST00000384648 107 ntBASIC3.03□□□□□ -1.92
MSX2P35548 MIR767-201ENST00000390228 109 ntBASIC3.03□□□□□ -1.92
MSX2P35548 RNA5SP201-201ENST00000410316 124 ntBASIC3.03□□□□□ -1.92
MSX2P35548 RNU5E-9P-201ENST00000411164 104 ntBASIC3.03□□□□□ -1.92
MSX2P35548 AL020998.1-201ENST00000444923 229 ntTSL 3 BASIC3.03□□□□□ -1.92
MSX2P35548 HMGB3P3-201ENST00000510526 400 ntBASIC3.03□□□□□ -1.92
MSX2P35548 AC025254.1-201ENST00000550035 247 ntTSL 5 BASIC3.03□□□□□ -1.92
MSX2P35548 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC3.03□□□□□ -1.92
MSX2P35548 AC025271.3-201ENST00000563031 255 ntTSL 5 BASIC3.03□□□□□ -1.92
MSX2P35548 RPS15AP11-201ENST00000594193 385 ntBASIC3.03□□□□□ -1.92
MSX2P35548 AC008739.2-201ENST00000597006 317 ntBASIC3.03□□□□□ -1.92
MSX2P35548 AL034555.1-201ENST00000604816 211 ntBASIC3.03□□□□□ -1.92
MSX2P35548 AL137843.1-201ENST00000605078 385 ntBASIC3.03□□□□□ -1.92
MSX2P35548 AC004832.4-201ENST00000608952 331 ntBASIC3.03□□□□□ -1.92
MSX2P35548 AC009093.8-201ENST00000641769 292 ntBASIC3.03□□□□□ -1.92
MSX2P35548 KIAA1107-202ENST00000636278 4065 ntAPPRIS P1 TSL 5 BASIC3.03□□□□□ -1.93
MSX2P35548 ZNF676-201ENST00000397121 2944 ntAPPRIS P1 TSL 2 BASIC3.03□□□□□ -1.93
MSX2P35548 CACNB4-222ENST00000636350 7654 ntTSL 5 BASIC3.03□□□□□ -1.93
MSX2P35548 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC3.02□□□□□ -1.93
MSX2P35548 ABCC9-202ENST00000261201 4650 ntAPPRIS ALT1 TSL 5 BASIC3.02□□□□□ -1.93
Retrieved 100 of 98,524 protein–RNA pairs in 102.1 ms