Protein–RNA interactions for Protein: P35453

HOXD13, Homeobox protein Hox-D13, humanhuman

Predictions only

Length 343 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD13P35453 TRAJ11-201ENST00000390526 60 ntAPPRIS P1 BASIC2.1□□□□□ -2.07
HOXD13P35453 SNORA48.1-201ENST00000390879 135 ntBASIC2.1□□□□□ -2.07
HOXD13P35453 AL357134.1-201ENST00000445848 426 ntBASIC2.1□□□□□ -2.07
HOXD13P35453 RN7SKP210-201ENST00000459176 261 ntBASIC2.1□□□□□ -2.07
HOXD13P35453 UBL5P3-201ENST00000475112 231 ntBASIC2.1□□□□□ -2.07
HOXD13P35453 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC2.1□□□□□ -2.07
HOXD13P35453 RN7SL429P-201ENST00000479090 223 ntBASIC2.1□□□□□ -2.07
HOXD13P35453 RN7SL489P-201ENST00000486185 223 ntBASIC2.1□□□□□ -2.07
HOXD13P35453 RN7SL327P-201ENST00000488659 223 ntBASIC2.1□□□□□ -2.07
HOXD13P35453 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC2.1□□□□□ -2.07
HOXD13P35453 AC116337.1-201ENST00000509680 687 ntBASIC2.1□□□□□ -2.07
HOXD13P35453 AC046134.1-201ENST00000514454 666 ntBASIC2.1□□□□□ -2.07
HOXD13P35453 RNU7-175P-201ENST00000515915 61 ntBASIC2.1□□□□□ -2.07
HOXD13P35453 Y_RNA.682-201ENST00000516457 100 ntBASIC2.1□□□□□ -2.07
HOXD13P35453 DEFB131C-201ENST00000528817 165 ntBASIC2.1□□□□□ -2.07
HOXD13P35453 AC103794.1-201ENST00000531763 197 ntTSL 3 BASIC2.1□□□□□ -2.07
HOXD13P35453 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC2.1□□□□□ -2.07
HOXD13P35453 MIR4742-201ENST00000581069 85 ntBASIC2.1□□□□□ -2.07
HOXD13P35453 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC2.1□□□□□ -2.07
HOXD13P35453 B3GNTL1P2-201ENST00000603673 288 ntBASIC2.1□□□□□ -2.07
HOXD13P35453 RN7SL853P-201ENST00000617250 223 ntBASIC2.1□□□□□ -2.07
HOXD13P35453 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC2.1□□□□□ -2.07
HOXD13P35453 ZNF204P-201ENST00000416749 2397 ntBASIC2.1□□□□□ -2.07
HOXD13P35453 LINC00645-203ENST00000557399 3512 ntTSL 1 (best) BASIC2.1□□□□□ -2.07
HOXD13P35453 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.1□□□□□ -2.07
HOXD13P35453 MTND4P1-201ENST00000457501 1466 ntBASIC2.09□□□□□ -2.07
HOXD13P35453 AC245060.5-201ENST00000610778 3293 ntBASIC2.09□□□□□ -2.07
HOXD13P35453 RNU6-245P-201ENST00000384020 107 ntBASIC2.09□□□□□ -2.07
HOXD13P35453 Y_RNA.490-201ENST00000384413 102 ntBASIC2.09□□□□□ -2.07
HOXD13P35453 RNU6-541P-201ENST00000384709 110 ntBASIC2.09□□□□□ -2.07
HOXD13P35453 SNORA12.2-201ENST00000391040 156 ntBASIC2.09□□□□□ -2.07
HOXD13P35453 AL356776.1-201ENST00000406574 447 ntBASIC2.09□□□□□ -2.07
HOXD13P35453 Y_RNA.599-201ENST00000410489 109 ntBASIC2.09□□□□□ -2.07
HOXD13P35453 AC074085.1-201ENST00000413598 418 ntBASIC2.09□□□□□ -2.07
HOXD13P35453 AC003989.2-201ENST00000440224 169 ntBASIC2.09□□□□□ -2.07
HOXD13P35453 AL357873.1-201ENST00000449215 282 ntTSL 3 BASIC2.09□□□□□ -2.07
HOXD13P35453 MTCO3P8-201ENST00000453691 755 ntBASIC2.09□□□□□ -2.07
HOXD13P35453 AC069439.1-201ENST00000494739 167 ntBASIC2.09□□□□□ -2.07
HOXD13P35453 YWHAEP4-201ENST00000505390 198 ntBASIC2.09□□□□□ -2.07
HOXD13P35453 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC2.09□□□□□ -2.07
HOXD13P35453 RNU6-948P-201ENST00000516374 107 ntBASIC2.09□□□□□ -2.07
HOXD13P35453 RRN3P3-201ENST00000549207 578 ntBASIC2.09□□□□□ -2.07
HOXD13P35453 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC2.09□□□□□ -2.07
HOXD13P35453 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC2.09□□□□□ -2.07
HOXD13P35453 AC005668.1-201ENST00000571142 476 ntBASIC2.09□□□□□ -2.07
HOXD13P35453 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC2.09□□□□□ -2.07
HOXD13P35453 MIR5696-201ENST00000578474 85 ntBASIC2.09□□□□□ -2.07
HOXD13P35453 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.09□□□□□ -2.08
HOXD13P35453 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.09□□□□□ -2.08
HOXD13P35453 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC2.08□□□□□ -2.08
HOXD13P35453 SNORD114-1-201ENST00000362705 72 ntBASIC2.08□□□□□ -2.08
HOXD13P35453 RNU6-593P-201ENST00000364716 112 ntBASIC2.08□□□□□ -2.08
HOXD13P35453 Y_RNA.319-201ENST00000365138 92 ntBASIC2.08□□□□□ -2.08
HOXD13P35453 RNU6ATAC38P-201ENST00000408119 126 ntBASIC2.08□□□□□ -2.08
HOXD13P35453 MTCO1P44-201ENST00000441935 243 ntBASIC2.08□□□□□ -2.08
HOXD13P35453 RPS29P11-201ENST00000496507 171 ntBASIC2.08□□□□□ -2.08
HOXD13P35453 MTND5P5-201ENST00000503764 376 ntBASIC2.08□□□□□ -2.08
HOXD13P35453 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC2.08□□□□□ -2.08
HOXD13P35453 AC067942.3-201ENST00000512025 362 ntBASIC2.08□□□□□ -2.08
HOXD13P35453 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC2.08□□□□□ -2.08
HOXD13P35453 AL096840.1-201ENST00000603287 93 ntBASIC2.08□□□□□ -2.08
HOXD13P35453 uc_338.20-201ENST00000621563 178 ntBASIC2.08□□□□□ -2.08
HOXD13P35453 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.08□□□□□ -2.08
HOXD13P35453 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC2.08□□□□□ -2.08
HOXD13P35453 CENPCP1-201ENST00000533085 2578 ntBASIC2.08□□□□□ -2.08
HOXD13P35453 AL159152.1-201ENST00000635019 2587 ntBASIC2.08□□□□□ -2.08
HOXD13P35453 ZNF644-212ENST00000621077 2056 ntTSL 5 BASIC2.08□□□□□ -2.08
HOXD13P35453 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.08□□□□□ -2.08
HOXD13P35453 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC2.08□□□□□ -2.08
HOXD13P35453 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
HOXD13P35453 CSNK1G3-202ENST00000360683 4047 ntAPPRIS ALT2 TSL 1 (best) BASIC2.07□□□□□ -2.08
HOXD13P35453 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
HOXD13P35453 U8.10-201ENST00000384260 133 ntBASIC2.07□□□□□ -2.08
HOXD13P35453 MIR676-201ENST00000390702 67 ntBASIC2.07□□□□□ -2.08
HOXD13P35453 RNU6-174P-201ENST00000410406 106 ntBASIC2.07□□□□□ -2.08
HOXD13P35453 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC2.07□□□□□ -2.08
HOXD13P35453 NCOR1P3-201ENST00000420479 303 ntBASIC2.07□□□□□ -2.08
HOXD13P35453 HMGN2P19-201ENST00000425149 265 ntBASIC2.07□□□□□ -2.08
HOXD13P35453 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC2.07□□□□□ -2.08
HOXD13P35453 AC107399.1-201ENST00000451226 265 ntBASIC2.07□□□□□ -2.08
HOXD13P35453 AC010531.2-201ENST00000465012 153 ntBASIC2.07□□□□□ -2.08
HOXD13P35453 FO393415.2-201ENST00000480085 343 ntBASIC2.07□□□□□ -2.08
HOXD13P35453 RNU6-344P-201ENST00000516635 111 ntBASIC2.07□□□□□ -2.08
HOXD13P35453 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC2.07□□□□□ -2.08
HOXD13P35453 AL590705.4-201ENST00000532209 134 ntBASIC2.07□□□□□ -2.08
HOXD13P35453 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC2.07□□□□□ -2.08
HOXD13P35453 AC010928.2-201ENST00000588017 287 ntBASIC2.07□□□□□ -2.08
HOXD13P35453 AC084782.3-201ENST00000612282 578 ntBASIC2.07□□□□□ -2.08
HOXD13P35453 AC083806.3-201ENST00000614016 455 ntBASIC2.07□□□□□ -2.08
HOXD13P35453 AC098657.3-201ENST00000620434 263 ntBASIC2.07□□□□□ -2.08
HOXD13P35453 ZNF299P-201ENST00000406845 1804 ntBASIC2.07□□□□□ -2.08
HOXD13P35453 Y_RNA.248-201ENST00000364501 109 ntBASIC2.06□□□□□ -2.08
HOXD13P35453 RNU6-767P-201ENST00000384132 107 ntBASIC2.06□□□□□ -2.08
HOXD13P35453 MIR586-201ENST00000385035 97 ntBASIC2.06□□□□□ -2.08
HOXD13P35453 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC2.06□□□□□ -2.08
HOXD13P35453 USMG5P1-201ENST00000425964 177 ntBASIC2.06□□□□□ -2.08
HOXD13P35453 USP9YP30-201ENST00000430729 455 ntBASIC2.06□□□□□ -2.08
HOXD13P35453 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC2.06□□□□□ -2.08
HOXD13P35453 SNORD5.1-201ENST00000458800 75 ntBASIC2.06□□□□□ -2.08
HOXD13P35453 RPL31P58-201ENST00000469001 379 ntBASIC2.06□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 234.8 ms