Protein–RNA interactions for Protein: P31274

HOXC9, Homeobox protein Hox-C9, humanhuman

Predictions only

Length 260 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC9P31274 MIR29B2-201ENST00000385055 81 ntBASIC2.36□□□□□ -2.03
HOXC9P31274 SNORA46.1-201ENST00000391069 153 ntBASIC2.36□□□□□ -2.03
HOXC9P31274 MTCYBP4-201ENST00000401524 249 ntBASIC2.36□□□□□ -2.03
HOXC9P31274 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.36□□□□□ -2.03
HOXC9P31274 RNU4-62P-201ENST00000410125 130 ntBASIC2.36□□□□□ -2.03
HOXC9P31274 Y_RNA.597-201ENST00000410463 100 ntBASIC2.36□□□□□ -2.03
HOXC9P31274 BTF3P4-201ENST00000418852 495 ntBASIC2.36□□□□□ -2.03
HOXC9P31274 Z82188.1-201ENST00000436709 154 ntBASIC2.36□□□□□ -2.03
HOXC9P31274 MTCO3P10-201ENST00000455912 772 ntBASIC2.36□□□□□ -2.03
HOXC9P31274 Y_RNA.653-201ENST00000459091 95 ntBASIC2.36□□□□□ -2.03
HOXC9P31274 RPL23AP75-201ENST00000491601 451 ntBASIC2.36□□□□□ -2.03
HOXC9P31274 AC108729.3-201ENST00000513484 108 ntBASIC2.36□□□□□ -2.03
HOXC9P31274 RNU6-567P-201ENST00000516746 107 ntBASIC2.36□□□□□ -2.03
HOXC9P31274 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC2.36□□□□□ -2.03
HOXC9P31274 AC098657.3-201ENST00000620434 263 ntBASIC2.36□□□□□ -2.03
HOXC9P31274 AL359697.1-201ENST00000624879 587 ntBASIC2.36□□□□□ -2.03
HOXC9P31274 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC2.36□□□□□ -2.03
HOXC9P31274 ZNF299P-201ENST00000406845 1804 ntBASIC2.35□□□□□ -2.03
HOXC9P31274 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
HOXC9P31274 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.35□□□□□ -2.03
HOXC9P31274 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.35□□□□□ -2.03
HOXC9P31274 KTN1-207ENST00000438792 4449 ntAPPRIS ALT2 TSL 5 BASIC2.35□□□□□ -2.03
HOXC9P31274 MAPK10-266ENST00000641066 6555 ntBASIC2.35□□□□□ -2.03
HOXC9P31274 RNU5B-2P-201ENST00000363036 113 ntBASIC2.35□□□□□ -2.03
HOXC9P31274 RNU1-23P-201ENST00000363361 144 ntBASIC2.35□□□□□ -2.03
HOXC9P31274 RNA5SP240-201ENST00000365355 128 ntBASIC2.35□□□□□ -2.03
HOXC9P31274 RNU6-378P-201ENST00000384324 107 ntBASIC2.35□□□□□ -2.03
HOXC9P31274 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.35□□□□□ -2.03
HOXC9P31274 TRDJ3-201ENST00000390476 59 ntAPPRIS P1 BASIC2.35□□□□□ -2.03
HOXC9P31274 RNY4P36-201ENST00000391116 96 ntBASIC2.35□□□□□ -2.03
HOXC9P31274 RNU6-1093P-201ENST00000391194 107 ntBASIC2.35□□□□□ -2.03
HOXC9P31274 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC2.35□□□□□ -2.03
HOXC9P31274 RNU6-120P-201ENST00000516077 103 ntBASIC2.35□□□□□ -2.03
HOXC9P31274 RNU6-965P-201ENST00000516721 96 ntBASIC2.35□□□□□ -2.03
HOXC9P31274 Y_RNA.718-201ENST00000517110 102 ntBASIC2.35□□□□□ -2.03
HOXC9P31274 AP001825.1-201ENST00000534275 351 ntTSL 2 BASIC2.35□□□□□ -2.03
HOXC9P31274 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC2.35□□□□□ -2.03
HOXC9P31274 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC2.35□□□□□ -2.03
HOXC9P31274 CYP4A27P-201ENST00000567218 190 ntBASIC2.35□□□□□ -2.03
HOXC9P31274 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC2.35□□□□□ -2.03
HOXC9P31274 CAPS2-203ENST00000393284 3430 ntAPPRIS P1 TSL 1 (best) BASIC2.35□□□□□ -2.03
HOXC9P31274 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC2.34□□□□□ -2.03
HOXC9P31274 MIR378A-201ENST00000362177 66 ntBASIC2.34□□□□□ -2.03
HOXC9P31274 SNORA16.1-201ENST00000364597 132 ntBASIC2.34□□□□□ -2.03
HOXC9P31274 RNA5SP37-201ENST00000365420 130 ntBASIC2.34□□□□□ -2.03
HOXC9P31274 RNU6-890P-201ENST00000384121 107 ntBASIC2.34□□□□□ -2.03
HOXC9P31274 MIR32-201ENST00000384965 70 ntBASIC2.34□□□□□ -2.03
HOXC9P31274 MIR487A-201ENST00000385009 80 ntBASIC2.34□□□□□ -2.03
HOXC9P31274 MTCO2P27-201ENST00000420740 428 ntBASIC2.34□□□□□ -2.03
HOXC9P31274 AC243428.1-201ENST00000421099 264 ntBASIC2.34□□□□□ -2.03
HOXC9P31274 AL589935.1-209ENST00000432050 418 ntTSL 5 BASIC2.34□□□□□ -2.03
HOXC9P31274 MTCO3P29-201ENST00000432119 779 ntBASIC2.34□□□□□ -2.03
HOXC9P31274 SNORD19B-201ENST00000459623 84 ntBASIC2.34□□□□□ -2.03
HOXC9P31274 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC2.34□□□□□ -2.03
HOXC9P31274 RNU6-1053P-201ENST00000515930 101 ntBASIC2.34□□□□□ -2.03
HOXC9P31274 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC2.34□□□□□ -2.03
HOXC9P31274 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC2.34□□□□□ -2.03
HOXC9P31274 AC016256.1-201ENST00000547971 354 ntBASIC2.34□□□□□ -2.03
HOXC9P31274 PRELID2P1-201ENST00000552837 301 ntBASIC2.34□□□□□ -2.03
HOXC9P31274 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC2.34□□□□□ -2.03
HOXC9P31274 MIR5696-201ENST00000578474 85 ntBASIC2.34□□□□□ -2.03
HOXC9P31274 AC010928.2-201ENST00000588017 287 ntBASIC2.34□□□□□ -2.03
HOXC9P31274 LIFR-201ENST00000263409 10089 ntAPPRIS P1 TSL 1 (best) BASIC2.34□□□□□ -2.03
HOXC9P31274 MTND4P29-201ENST00000503122 1372 ntBASIC2.34□□□□□ -2.04
HOXC9P31274 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC2.34□□□□□ -2.04
HOXC9P31274 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
HOXC9P31274 RNU4-79P-201ENST00000362764 141 ntBASIC2.33□□□□□ -2.04
HOXC9P31274 RNU6-595P-201ENST00000363944 107 ntBASIC2.33□□□□□ -2.04
HOXC9P31274 SNORA67.1-201ENST00000364749 141 ntBASIC2.33□□□□□ -2.04
HOXC9P31274 RNU4-9P-201ENST00000364951 139 ntBASIC2.33□□□□□ -2.04
HOXC9P31274 MIR549A-201ENST00000385268 96 ntBASIC2.33□□□□□ -2.04
HOXC9P31274 MTND3P23-201ENST00000431980 347 ntBASIC2.33□□□□□ -2.04
HOXC9P31274 AC236972.2-201ENST00000434979 310 ntBASIC2.33□□□□□ -2.04
HOXC9P31274 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC2.33□□□□□ -2.04
HOXC9P31274 TOMM22P6-201ENST00000465035 409 ntBASIC2.33□□□□□ -2.04
HOXC9P31274 AC090255.1-201ENST00000495779 349 ntBASIC2.33□□□□□ -2.04
HOXC9P31274 AC097473.1-201ENST00000508142 408 ntBASIC2.33□□□□□ -2.04
HOXC9P31274 MIR449C-201ENST00000516047 92 ntBASIC2.33□□□□□ -2.04
HOXC9P31274 RNU6-307P-201ENST00000516743 106 ntBASIC2.33□□□□□ -2.04
HOXC9P31274 MIR4446-201ENST00000578505 67 ntBASIC2.33□□□□□ -2.04
HOXC9P31274 AC036222.2-201ENST00000579033 333 ntTSL 3 BASIC2.33□□□□□ -2.04
HOXC9P31274 AC005899.2-201ENST00000584353 90 ntBASIC2.33□□□□□ -2.04
HOXC9P31274 C8orf59P2-201ENST00000603441 271 ntBASIC2.33□□□□□ -2.04
HOXC9P31274 7SK.7-201ENST00000603504 247 ntBASIC2.33□□□□□ -2.04
HOXC9P31274 AC005014.2-201ENST00000607795 599 ntBASIC2.33□□□□□ -2.04
HOXC9P31274 AC133104.2-201ENST00000615272 193 ntBASIC2.33□□□□□ -2.04
HOXC9P31274 SCARNA4-201ENST00000629045 128 ntBASIC2.33□□□□□ -2.04
HOXC9P31274 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC2.33□□□□□ -2.04
HOXC9P31274 KPNA5-202ENST00000368564 11311 ntAPPRIS P1 TSL 1 (best) BASIC2.33□□□□□ -2.04
HOXC9P31274 LRRCC1-202ENST00000414626 4493 ntAPPRIS ALT2 TSL 1 (best) BASIC2.32□□□□□ -2.04
HOXC9P31274 CLLU1-201ENST00000378485 3897 ntAPPRIS P1 TSL 1 (best) BASIC2.32□□□□□ -2.04
HOXC9P31274 RNY1P16-201ENST00000363063 111 ntBASIC2.32□□□□□ -2.04
HOXC9P31274 MTCYBP2-201ENST00000407745 171 ntBASIC2.32□□□□□ -2.04
HOXC9P31274 RNA5SP201-201ENST00000410316 124 ntBASIC2.32□□□□□ -2.04
HOXC9P31274 AP1B1P2-201ENST00000416196 106 ntBASIC2.32□□□□□ -2.04
HOXC9P31274 AL354949.1-201ENST00000446438 170 ntTSL 2 BASIC2.32□□□□□ -2.04
HOXC9P31274 AL139109.1-201ENST00000455491 297 ntBASIC2.32□□□□□ -2.04
HOXC9P31274 RPL30P10-201ENST00000488148 337 ntBASIC2.32□□□□□ -2.04
HOXC9P31274 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC2.32□□□□□ -2.04
HOXC9P31274 AL590705.4-201ENST00000532209 134 ntBASIC2.32□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 99.6 ms