Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 MIR221-201ENST00000385135 110 ntBASIC2.62□□□□□ -1.99
HMGB1P09429 MIR1253-201ENST00000408273 105 ntBASIC2.62□□□□□ -1.99
HMGB1P09429 AL590399.1-203ENST00000412631 256 ntTSL 5 BASIC2.62□□□□□ -1.99
HMGB1P09429 AC245047.4-201ENST00000433189 144 ntBASIC2.62□□□□□ -1.99
HMGB1P09429 HMGN2P34-201ENST00000437647 269 ntBASIC2.62□□□□□ -1.99
HMGB1P09429 AC104435.1-201ENST00000483483 166 ntBASIC2.62□□□□□ -1.99
HMGB1P09429 RPL30P10-201ENST00000488148 337 ntBASIC2.62□□□□□ -1.99
HMGB1P09429 AC008413.1-201ENST00000511864 177 ntBASIC2.62□□□□□ -1.99
HMGB1P09429 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC2.62□□□□□ -1.99
HMGB1P09429 SNRPGP18-201ENST00000553000 214 ntBASIC2.62□□□□□ -1.99
HMGB1P09429 MIR126-201ENST00000362291 85 ntBASIC2.61□□□□□ -1.99
HMGB1P09429 Y_RNA.533-201ENST00000384596 114 ntBASIC2.61□□□□□ -1.99
HMGB1P09429 RNU4-53P-201ENST00000410828 140 ntBASIC2.61□□□□□ -1.99
HMGB1P09429 AL139396.1-201ENST00000421137 167 ntBASIC2.61□□□□□ -1.99
HMGB1P09429 AL356124.2-201ENST00000442449 391 ntTSL 5 BASIC2.61□□□□□ -1.99
HMGB1P09429 AC005908.1-201ENST00000468701 347 ntBASIC2.61□□□□□ -1.99
HMGB1P09429 RPS29P25-201ENST00000481709 171 ntBASIC2.61□□□□□ -1.99
HMGB1P09429 RNU6-344P-201ENST00000516635 111 ntBASIC2.61□□□□□ -1.99
HMGB1P09429 MIR4790-201ENST00000577799 79 ntBASIC2.61□□□□□ -1.99
HMGB1P09429 SNORD11B-201ENST00000607707 90 ntBASIC2.61□□□□□ -1.99
HMGB1P09429 AC139792.2-201ENST00000624218 587 ntBASIC2.61□□□□□ -1.99
HMGB1P09429 RBMS2-209ENST00000639027 192 ntTSL 5 BASIC2.61□□□□□ -1.99
HMGB1P09429 PLOD2-204ENST00000461497 3043 ntTSL 2 BASIC2.61□□□□□ -1.99
HMGB1P09429 TANK-201ENST00000259075 2152 ntAPPRIS P1 TSL 1 (best) BASIC2.61□□□□□ -1.99
HMGB1P09429 AC005336.3-201ENST00000623833 2679 ntBASIC2.6□□□□□ -1.99
HMGB1P09429 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC2.6□□□□□ -1.99
HMGB1P09429 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC2.6□□□□□ -1.99
HMGB1P09429 RNU6-245P-201ENST00000384020 107 ntBASIC2.6□□□□□ -1.99
HMGB1P09429 AL117342.1-201ENST00000404861 406 ntBASIC2.6□□□□□ -1.99
HMGB1P09429 MIR1277-201ENST00000408536 78 ntBASIC2.6□□□□□ -1.99
HMGB1P09429 MIR1267-201ENST00000408723 78 ntBASIC2.6□□□□□ -1.99
HMGB1P09429 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC2.6□□□□□ -1.99
HMGB1P09429 AC007098.1-201ENST00000420122 367 ntBASIC2.6□□□□□ -1.99
HMGB1P09429 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC2.6□□□□□ -1.99
HMGB1P09429 MTCO3P29-201ENST00000432119 779 ntBASIC2.6□□□□□ -1.99
HMGB1P09429 RNA5SP437-201ENST00000517249 129 ntBASIC2.6□□□□□ -1.99
HMGB1P09429 HSBP1P1-201ENST00000555205 166 ntBASIC2.6□□□□□ -1.99
HMGB1P09429 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC2.6□□□□□ -1.99
HMGB1P09429 MIR338-201ENST00000636369 67 ntBASIC2.6□□□□□ -1.99
HMGB1P09429 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -1.99
HMGB1P09429 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC2.59□□□□□ -1.99
HMGB1P09429 Y_RNA.86-201ENST00000363020 111 ntBASIC2.59□□□□□ -1.99
HMGB1P09429 RNU6-727P-201ENST00000363592 107 ntBASIC2.59□□□□□ -1.99
HMGB1P09429 RNU6-1059P-201ENST00000363752 98 ntBASIC2.59□□□□□ -1.99
HMGB1P09429 RNU6-873P-201ENST00000363833 107 ntBASIC2.59□□□□□ -1.99
HMGB1P09429 CST2P1-201ENST00000425770 87 ntBASIC2.59□□□□□ -1.99
HMGB1P09429 LANCL1-AS1-203ENST00000433296 864 ntTSL 2 BASIC2.59□□□□□ -1.99
HMGB1P09429 LINC01201-202ENST00000451431 401 ntTSL 3 BASIC2.59□□□□□ -1.99
HMGB1P09429 snoU13.9-201ENST00000458927 103 ntBASIC2.59□□□□□ -1.99
HMGB1P09429 RNU7-175P-201ENST00000515915 61 ntBASIC2.59□□□□□ -1.99
HMGB1P09429 RNU6-1146P-201ENST00000516282 102 ntBASIC2.59□□□□□ -1.99
HMGB1P09429 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC2.59□□□□□ -1.99
HMGB1P09429 MIR4285-201ENST00000581001 85 ntBASIC2.59□□□□□ -1.99
HMGB1P09429 Six3os1_7.1-201ENST00000621512 201 ntBASIC2.59□□□□□ -1.99
HMGB1P09429 PRKD3-201ENST00000234179 5900 ntAPPRIS P1 TSL 1 (best) BASIC2.59□□□□□ -2
HMGB1P09429 ZNF720P1-201ENST00000562403 1939 ntBASIC2.58□□□□□ -2
HMGB1P09429 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC2.58□□□□□ -2
HMGB1P09429 CEP162-201ENST00000257766 5063 ntTSL 1 (best) BASIC2.58□□□□□ -2
HMGB1P09429 AGR3-201ENST00000310398 749 ntAPPRIS P1 TSL 1 (best) BASIC2.58□□□□□ -2
HMGB1P09429 SNORD115-8-201ENST00000363856 82 ntBASIC2.58□□□□□ -2
HMGB1P09429 SNORD115-38-201ENST00000365037 82 ntBASIC2.58□□□□□ -2
HMGB1P09429 MIR934-201ENST00000401241 83 ntBASIC2.58□□□□□ -2
HMGB1P09429 AC019129.1-201ENST00000403786 261 ntBASIC2.58□□□□□ -2
HMGB1P09429 USP9YP30-201ENST00000430729 455 ntBASIC2.58□□□□□ -2
HMGB1P09429 AC011352.1-201ENST00000512300 793 ntBASIC2.58□□□□□ -2
HMGB1P09429 Y_RNA.682-201ENST00000516457 100 ntBASIC2.58□□□□□ -2
HMGB1P09429 SCARNA16.3-201ENST00000516595 184 ntBASIC2.58□□□□□ -2
HMGB1P09429 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC2.58□□□□□ -2
HMGB1P09429 AC026464.5-201ENST00000562497 722 ntBASIC2.58□□□□□ -2
HMGB1P09429 UBL5P4-201ENST00000562584 236 ntBASIC2.58□□□□□ -2
HMGB1P09429 AC068790.6-201ENST00000602558 258 ntBASIC2.58□□□□□ -2
HMGB1P09429 MTND5P6-201ENST00000422338 1798 ntBASIC2.57□□□□□ -2
HMGB1P09429 snoU2-30.2-201ENST00000362805 70 ntBASIC2.57□□□□□ -2
HMGB1P09429 RNU6-417P-201ENST00000384712 107 ntBASIC2.57□□□□□ -2
HMGB1P09429 AL356320.1-201ENST00000429616 163 ntBASIC2.57□□□□□ -2
HMGB1P09429 PPP1R2P5-201ENST00000457256 603 ntBASIC2.57□□□□□ -2
HMGB1P09429 AC027288.2-201ENST00000553028 243 ntBASIC2.57□□□□□ -2
HMGB1P09429 MIR5696-201ENST00000578474 85 ntBASIC2.57□□□□□ -2
HMGB1P09429 MIR4448-201ENST00000584360 86 ntBASIC2.57□□□□□ -2
HMGB1P09429 AL353149.1-201ENST00000610667 244 ntBASIC2.57□□□□□ -2
HMGB1P09429 AC007014.2-201ENST00000615581 479 ntBASIC2.57□□□□□ -2
HMGB1P09429 AC009248.2-201ENST00000619826 254 ntBASIC2.57□□□□□ -2
HMGB1P09429 snoZ196.1-201ENST00000625269 89 ntBASIC2.57□□□□□ -2
HMGB1P09429 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC2.57□□□□□ -2
HMGB1P09429 RNU4-82P-201ENST00000362443 140 ntBASIC2.56□□□□□ -2
HMGB1P09429 Y_RNA.48-201ENST00000362710 103 ntBASIC2.56□□□□□ -2
HMGB1P09429 SNORD87-201ENST00000364849 89 ntBASIC2.56□□□□□ -2
HMGB1P09429 SNORA67.2-201ENST00000384300 149 ntBASIC2.56□□□□□ -2
HMGB1P09429 MTND1P17-201ENST00000448961 204 ntBASIC2.56□□□□□ -2
HMGB1P09429 RPL23AP7-203ENST00000449021 469 ntBASIC2.56□□□□□ -2
HMGB1P09429 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC2.56□□□□□ -2
HMGB1P09429 AL590705.4-201ENST00000532209 134 ntBASIC2.56□□□□□ -2
HMGB1P09429 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC2.56□□□□□ -2
HMGB1P09429 CR936218.1-201ENST00000570454 304 ntTSL 2 BASIC2.56□□□□□ -2
HMGB1P09429 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.56□□□□□ -2
HMGB1P09429 AC018638.8-201ENST00000588755 281 ntBASIC2.56□□□□□ -2
HMGB1P09429 AL158827.2-201ENST00000602494 330 ntBASIC2.56□□□□□ -2
HMGB1P09429 RNU6ATAC35P-201ENST00000609276 444 ntBASIC2.56□□□□□ -2
HMGB1P09429 AC008873.1-201ENST00000625051 138 ntBASIC2.56□□□□□ -2
HMGB1P09429 AL691447.3-201ENST00000635020 330 ntBASIC2.56□□□□□ -2
Retrieved 100 of 98,524 protein–RNA pairs in 111.8 ms