Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC1.96□□□□□ -2.1
HOXD4P09016 AL078605.1-201ENST00000603529 500 ntBASIC1.96□□□□□ -2.1
HOXD4P09016 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC1.96□□□□□ -2.1
HOXD4P09016 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
HOXD4P09016 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.96□□□□□ -2.1
HOXD4P09016 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.96□□□□□ -2.1
HOXD4P09016 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC1.95□□□□□ -2.1
HOXD4P09016 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
HOXD4P09016 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.95□□□□□ -2.1
HOXD4P09016 RNU6-1115P-201ENST00000362490 106 ntBASIC1.95□□□□□ -2.1
HOXD4P09016 RNU6-655P-201ENST00000362858 107 ntBASIC1.95□□□□□ -2.1
HOXD4P09016 RNY1P16-201ENST00000363063 111 ntBASIC1.95□□□□□ -2.1
HOXD4P09016 RNA5SP240-201ENST00000365355 128 ntBASIC1.95□□□□□ -2.1
HOXD4P09016 SNORA29-201ENST00000384183 140 ntBASIC1.95□□□□□ -2.1
HOXD4P09016 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC1.95□□□□□ -2.1
HOXD4P09016 AL590135.1-201ENST00000422215 156 ntBASIC1.95□□□□□ -2.1
HOXD4P09016 AC019205.3-201ENST00000424573 156 ntBASIC1.95□□□□□ -2.1
HOXD4P09016 LINC01870-201ENST00000427042 390 ntTSL 3 BASIC1.95□□□□□ -2.1
HOXD4P09016 MTCO3P29-201ENST00000432119 779 ntBASIC1.95□□□□□ -2.1
HOXD4P09016 Z82188.1-201ENST00000436709 154 ntBASIC1.95□□□□□ -2.1
HOXD4P09016 TTTY16-201ENST00000437686 192 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
HOXD4P09016 AC016700.2-201ENST00000446011 156 ntBASIC1.95□□□□□ -2.1
HOXD4P09016 HMGN2P23-201ENST00000456759 269 ntBASIC1.95□□□□□ -2.1
HOXD4P09016 Y_RNA.639-201ENST00000458981 102 ntBASIC1.95□□□□□ -2.1
HOXD4P09016 AC117394.2-201ENST00000487827 323 ntTSL 3 BASIC1.95□□□□□ -2.1
HOXD4P09016 AF186996.7-201ENST00000492781 209 ntBASIC1.95□□□□□ -2.1
HOXD4P09016 AC015911.1-201ENST00000495111 156 ntBASIC1.95□□□□□ -2.1
HOXD4P09016 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC1.95□□□□□ -2.1
HOXD4P09016 RNU6-470P-201ENST00000515954 104 ntBASIC1.95□□□□□ -2.1
HOXD4P09016 RNA5SP458-201ENST00000516188 119 ntBASIC1.95□□□□□ -2.1
HOXD4P09016 RNU2-53P-201ENST00000516257 147 ntBASIC1.95□□□□□ -2.1
HOXD4P09016 AC115990.1-201ENST00000526957 301 ntBASIC1.95□□□□□ -2.1
HOXD4P09016 SMAD5-AS1_4.1-201ENST00000615561 167 ntBASIC1.95□□□□□ -2.1
HOXD4P09016 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.95□□□□□ -2.1
HOXD4P09016 SNORD98-201ENST00000636377 67 ntBASIC1.95□□□□□ -2.1
HOXD4P09016 AP000560.1-201ENST00000624150 1937 ntBASIC1.95□□□□□ -2.1
HOXD4P09016 ATP13A3-201ENST00000256031 7322 ntAPPRIS P1 TSL 5 BASIC1.94□□□□□ -2.1
HOXD4P09016 RNU1-72P-201ENST00000362976 153 ntBASIC1.94□□□□□ -2.1
HOXD4P09016 RNU5B-2P-201ENST00000363036 113 ntBASIC1.94□□□□□ -2.1
HOXD4P09016 Y_RNA.132-201ENST00000363421 102 ntBASIC1.94□□□□□ -2.1
HOXD4P09016 RNU6-1210P-201ENST00000363775 107 ntBASIC1.94□□□□□ -2.1
HOXD4P09016 Y_RNA.197-201ENST00000364004 102 ntBASIC1.94□□□□□ -2.1
HOXD4P09016 RNU6-142P-201ENST00000384019 107 ntBASIC1.94□□□□□ -2.1
HOXD4P09016 RNU6-474P-201ENST00000384243 107 ntBASIC1.94□□□□□ -2.1
HOXD4P09016 Y_RNA.463-201ENST00000384271 102 ntBASIC1.94□□□□□ -2.1
HOXD4P09016 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.94□□□□□ -2.1
HOXD4P09016 AL592435.1-201ENST00000416401 469 ntTSL 3 BASIC1.94□□□□□ -2.1
HOXD4P09016 CYP2C59P-201ENST00000457790 269 ntBASIC1.94□□□□□ -2.1
HOXD4P09016 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC1.94□□□□□ -2.1
HOXD4P09016 AC068781.1-201ENST00000488231 618 ntBASIC1.94□□□□□ -2.1
HOXD4P09016 RPL17P19-201ENST00000489069 552 ntBASIC1.94□□□□□ -2.1
HOXD4P09016 AC021146.2-201ENST00000504736 556 ntBASIC1.94□□□□□ -2.1
HOXD4P09016 RNU6-699P-201ENST00000517081 110 ntBASIC1.94□□□□□ -2.1
HOXD4P09016 AP000755.2-201ENST00000526777 571 ntTSL 5 BASIC1.94□□□□□ -2.1
HOXD4P09016 AP001363.1-201ENST00000544108 264 ntTSL 3 BASIC1.94□□□□□ -2.1
HOXD4P09016 AC021231.3-201ENST00000558497 370 ntBASIC1.94□□□□□ -2.1
HOXD4P09016 MIR5701-3-201ENST00000578890 82 ntBASIC1.94□□□□□ -2.1
HOXD4P09016 MIR5701-1-201ENST00000585138 82 ntBASIC1.94□□□□□ -2.1
HOXD4P09016 AC010928.2-201ENST00000588017 287 ntBASIC1.94□□□□□ -2.1
HOXD4P09016 Z98751.3-201ENST00000604447 521 ntBASIC1.94□□□□□ -2.1
HOXD4P09016 AL138963.2-201ENST00000605137 226 ntBASIC1.94□□□□□ -2.1
HOXD4P09016 SNORD14A-201ENST00000606526 91 ntBASIC1.94□□□□□ -2.1
HOXD4P09016 MIR5701-2-201ENST00000615634 82 ntBASIC1.94□□□□□ -2.1
HOXD4P09016 MIR5739-201ENST00000619803 80 ntBASIC1.94□□□□□ -2.1
HOXD4P09016 SCARNA4-201ENST00000629045 128 ntBASIC1.94□□□□□ -2.1
HOXD4P09016 DEUP1-201ENST00000298050 2664 ntAPPRIS P1 TSL 5 BASIC1.94□□□□□ -2.1
HOXD4P09016 AL356292.1-201ENST00000283110 373 ntBASIC1.93□□□□□ -2.1
HOXD4P09016 Y_RNA.5-201ENST00000362334 102 ntBASIC1.93□□□□□ -2.1
HOXD4P09016 RNU6-490P-201ENST00000362985 107 ntBASIC1.93□□□□□ -2.1
HOXD4P09016 RNU6-99P-201ENST00000364721 107 ntBASIC1.93□□□□□ -2.1
HOXD4P09016 Y_RNA.395-201ENST00000383945 109 ntBASIC1.93□□□□□ -2.1
HOXD4P09016 SNORA67.3-201ENST00000384366 140 ntBASIC1.93□□□□□ -2.1
HOXD4P09016 RNA5SP494-201ENST00000410653 129 ntBASIC1.93□□□□□ -2.1
HOXD4P09016 MRPS18CP6-201ENST00000423587 223 ntBASIC1.93□□□□□ -2.1
HOXD4P09016 LINC00459-201ENST00000431656 376 ntTSL 2 BASIC1.93□□□□□ -2.1
HOXD4P09016 AL591504.1-201ENST00000450681 414 ntTSL 3 BASIC1.93□□□□□ -2.1
HOXD4P09016 snoU13.6-201ENST00000458785 104 ntBASIC1.93□□□□□ -2.1
HOXD4P09016 AC087477.1-201ENST00000465747 340 ntBASIC1.93□□□□□ -2.1
HOXD4P09016 AC140059.1-201ENST00000489238 361 ntBASIC1.93□□□□□ -2.1
HOXD4P09016 RPL23AP75-201ENST00000491601 451 ntBASIC1.93□□□□□ -2.1
HOXD4P09016 CKS1BP2-201ENST00000497342 240 ntBASIC1.93□□□□□ -2.1
HOXD4P09016 HMGB1P35-201ENST00000503360 598 ntBASIC1.93□□□□□ -2.1
HOXD4P09016 RNA5SP364-201ENST00000516938 78 ntBASIC1.93□□□□□ -2.1
HOXD4P09016 RNU6-264P-201ENST00000517134 104 ntBASIC1.93□□□□□ -2.1
HOXD4P09016 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.93□□□□□ -2.1
HOXD4P09016 AC016256.1-201ENST00000547971 354 ntBASIC1.93□□□□□ -2.1
HOXD4P09016 MIR4719-201ENST00000585233 84 ntBASIC1.93□□□□□ -2.1
HOXD4P09016 AC012594.1-269ENST00000600489 628 ntTSL 5 BASIC1.93□□□□□ -2.1
HOXD4P09016 CYP2C61P-201ENST00000604072 290 ntBASIC1.93□□□□□ -2.1
HOXD4P09016 AL034555.1-201ENST00000604816 211 ntBASIC1.93□□□□□ -2.1
HOXD4P09016 uc_338.22-201ENST00000622722 187 ntBASIC1.93□□□□□ -2.1
HOXD4P09016 GPR22-201ENST00000304402 2942 ntAPPRIS P1 TSL 1 (best) BASIC1.93□□□□□ -2.1
HOXD4P09016 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC1.92□□□□□ -2.1
HOXD4P09016 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC1.92□□□□□ -2.1
HOXD4P09016 snoU2_19.1-201ENST00000362361 80 ntBASIC1.92□□□□□ -2.1
HOXD4P09016 Y_RNA.31-201ENST00000362574 102 ntBASIC1.92□□□□□ -2.1
HOXD4P09016 RNU6-1159P-201ENST00000362933 107 ntBASIC1.92□□□□□ -2.1
HOXD4P09016 RNU4-9P-201ENST00000364951 139 ntBASIC1.92□□□□□ -2.1
HOXD4P09016 Y_RNA.445-201ENST00000384168 102 ntBASIC1.92□□□□□ -2.1
HOXD4P09016 Y_RNA.496-201ENST00000384444 101 ntBASIC1.92□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 115 ms