Protein–RNA interactions for Protein: P02452

COL1A1, Collagen alpha-1(I) chain, humanhuman

Predicted RBP Predictions only

Length 1,464 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1P02452 SNORA4.2-201ENST00000365313 147 ntBASIC0.35□□□□□ -2.35
COL1A1P02452 MIR300-201ENST00000401138 83 ntBASIC0.35□□□□□ -2.35
COL1A1P02452 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.35□□□□□ -2.35
COL1A1P02452 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC0.35□□□□□ -2.35
COL1A1P02452 RPS27AP14-201ENST00000422868 454 ntBASIC0.35□□□□□ -2.35
COL1A1P02452 RPS24P1-201ENST00000438550 371 ntBASIC0.35□□□□□ -2.35
COL1A1P02452 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC0.35□□□□□ -2.35
COL1A1P02452 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC0.35□□□□□ -2.35
COL1A1P02452 AC008628.2-201ENST00000502605 298 ntBASIC0.35□□□□□ -2.35
COL1A1P02452 AC016632.1-201ENST00000503994 196 ntBASIC0.35□□□□□ -2.35
COL1A1P02452 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC0.35□□□□□ -2.35
COL1A1P02452 MTND2P31-201ENST00000512602 616 ntBASIC0.35□□□□□ -2.35
COL1A1P02452 RNU6-856P-201ENST00000516959 98 ntBASIC0.35□□□□□ -2.35
COL1A1P02452 AC090517.1-201ENST00000569307 266 ntBASIC0.35□□□□□ -2.35
COL1A1P02452 AC078795.3-201ENST00000602913 472 ntBASIC0.35□□□□□ -2.35
COL1A1P02452 AL513534.2-201ENST00000603836 250 ntBASIC0.35□□□□□ -2.35
COL1A1P02452 AL359999.1-201ENST00000604513 294 ntBASIC0.35□□□□□ -2.35
COL1A1P02452 AC064807.4-201ENST00000607201 407 ntBASIC0.35□□□□□ -2.35
COL1A1P02452 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC0.35□□□□□ -2.35
COL1A1P02452 BX322639.1-202ENST00000423987 2213 ntBASIC0.34□□□□□ -2.35
COL1A1P02452 AL391994.1-201ENST00000254724 282 ntBASIC0.34□□□□□ -2.36
COL1A1P02452 RNU6-562P-201ENST00000362731 107 ntBASIC0.34□□□□□ -2.36
COL1A1P02452 RNU6-931P-201ENST00000363850 107 ntBASIC0.34□□□□□ -2.36
COL1A1P02452 RNU4-1-201ENST00000363925 141 ntBASIC0.34□□□□□ -2.36
COL1A1P02452 RNU6-116P-201ENST00000384042 109 ntBASIC0.34□□□□□ -2.36
COL1A1P02452 RNU6-39P-201ENST00000384344 107 ntBASIC0.34□□□□□ -2.36
COL1A1P02452 RNU6-45P-201ENST00000384471 107 ntBASIC0.34□□□□□ -2.36
COL1A1P02452 MTCYBP36-201ENST00000404146 440 ntBASIC0.34□□□□□ -2.36
COL1A1P02452 ELOCP4-201ENST00000420090 333 ntBASIC0.34□□□□□ -2.36
COL1A1P02452 RAB28P5-201ENST00000427490 651 ntBASIC0.34□□□□□ -2.36
COL1A1P02452 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC0.34□□□□□ -2.36
COL1A1P02452 USP9YP25-201ENST00000457708 443 ntBASIC0.34□□□□□ -2.36
COL1A1P02452 RNU7-34P-201ENST00000459394 64 ntBASIC0.34□□□□□ -2.36
COL1A1P02452 snoU109.3-201ENST00000459477 145 ntBASIC0.34□□□□□ -2.36
COL1A1P02452 AL163973.1-201ENST00000484753 577 ntBASIC0.34□□□□□ -2.36
COL1A1P02452 AC023794.1-201ENST00000504210 403 ntTSL 2 BASIC0.34□□□□□ -2.36
COL1A1P02452 RNU2-34P-201ENST00000516534 121 ntBASIC0.34□□□□□ -2.36
COL1A1P02452 RNU6-165P-201ENST00000517170 99 ntBASIC0.34□□□□□ -2.36
COL1A1P02452 AL121579.1-201ENST00000555129 305 ntBASIC0.34□□□□□ -2.36
COL1A1P02452 AC073539.2-201ENST00000597113 165 ntBASIC0.34□□□□□ -2.36
COL1A1P02452 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC0.34□□□□□ -2.36
COL1A1P02452 AC005520.5-201ENST00000613926 164 ntBASIC0.34□□□□□ -2.36
COL1A1P02452 AC008250.2-201ENST00000615261 205 ntBASIC0.34□□□□□ -2.36
COL1A1P02452 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC0.34□□□□□ -2.36
COL1A1P02452 TTK-211ENST00000627129 240 ntTSL 5 BASIC0.34□□□□□ -2.36
COL1A1P02452 Y_RNA.18-201ENST00000362461 102 ntBASIC0.33□□□□□ -2.36
COL1A1P02452 RNU1-76P-201ENST00000362903 159 ntBASIC0.33□□□□□ -2.36
COL1A1P02452 RNU6-428P-201ENST00000362942 107 ntBASIC0.33□□□□□ -2.36
COL1A1P02452 Y_RNA.97-201ENST00000363094 102 ntBASIC0.33□□□□□ -2.36
COL1A1P02452 SNORD32A-201ENST00000364805 84 ntBASIC0.33□□□□□ -2.36
COL1A1P02452 RNU6-534P-201ENST00000364877 106 ntBASIC0.33□□□□□ -2.36
COL1A1P02452 RNU4-12P-201ENST00000365233 139 ntBASIC0.33□□□□□ -2.36
COL1A1P02452 RNU6-809P-201ENST00000384461 107 ntBASIC0.33□□□□□ -2.36
COL1A1P02452 RPS29P13-201ENST00000402041 169 ntBASIC0.33□□□□□ -2.36
COL1A1P02452 AC013470.1-201ENST00000453438 462 ntBASIC0.33□□□□□ -2.36
COL1A1P02452 MTCYBP1-201ENST00000454315 1119 ntBASIC0.33□□□□□ -2.36
COL1A1P02452 AC048334.1-201ENST00000477975 159 ntBASIC0.33□□□□□ -2.36
COL1A1P02452 RNU6-685P-201ENST00000517088 95 ntBASIC0.33□□□□□ -2.36
COL1A1P02452 AP003181.2-201ENST00000528941 181 ntBASIC0.33□□□□□ -2.36
COL1A1P02452 CCDC7-208ENST00000537047 657 ntAPPRIS ALT2 TSL 1 (best) BASIC0.33□□□□□ -2.36
COL1A1P02452 AC023050.3-201ENST00000541142 333 ntBASIC0.33□□□□□ -2.36
COL1A1P02452 AC018659.1-201ENST00000551083 169 ntBASIC0.33□□□□□ -2.36
COL1A1P02452 ZNF519P3-201ENST00000557158 1032 ntBASIC0.33□□□□□ -2.36
COL1A1P02452 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC0.33□□□□□ -2.36
COL1A1P02452 CTHRC1P1-201ENST00000605383 469 ntBASIC0.33□□□□□ -2.36
COL1A1P02452 AL031667.3-201ENST00000620124 655 ntBASIC0.33□□□□□ -2.36
COL1A1P02452 AL136221.1-201ENST00000621449 509 ntBASIC0.33□□□□□ -2.36
COL1A1P02452 AL445984.1-201ENST00000637834 659 ntBASIC0.33□□□□□ -2.36
COL1A1P02452 AC134026.1-201ENST00000623249 2239 ntBASIC0.32□□□□□ -2.36
COL1A1P02452 Y_RNA.48-201ENST00000362710 103 ntBASIC0.32□□□□□ -2.36
COL1A1P02452 RNU4-79P-201ENST00000362764 141 ntBASIC0.32□□□□□ -2.36
COL1A1P02452 RNU6-552P-201ENST00000362869 119 ntBASIC0.32□□□□□ -2.36
COL1A1P02452 RNU6-179P-201ENST00000363350 107 ntBASIC0.32□□□□□ -2.36
COL1A1P02452 Y_RNA.576-201ENST00000384781 102 ntBASIC0.32□□□□□ -2.36
COL1A1P02452 MIR605-201ENST00000385078 83 ntBASIC0.32□□□□□ -2.36
COL1A1P02452 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC0.32□□□□□ -2.36
COL1A1P02452 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC0.32□□□□□ -2.36
COL1A1P02452 AC007283.2-201ENST00000424739 197 ntBASIC0.32□□□□□ -2.36
COL1A1P02452 AL353614.1-201ENST00000445631 206 ntTSL 5 BASIC0.32□□□□□ -2.36
COL1A1P02452 AL031313.1-201ENST00000448435 256 ntBASIC0.32□□□□□ -2.36
COL1A1P02452 C1DP4-201ENST00000455429 424 ntBASIC0.32□□□□□ -2.36
COL1A1P02452 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC0.32□□□□□ -2.36
COL1A1P02452 MTCO3P7-201ENST00000510008 774 ntBASIC0.32□□□□□ -2.36
COL1A1P02452 SNORA31.2-201ENST00000516019 134 ntBASIC0.32□□□□□ -2.36
COL1A1P02452 AC024995.1-201ENST00000523014 93 ntBASIC0.32□□□□□ -2.36
COL1A1P02452 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC0.32□□□□□ -2.36
COL1A1P02452 MIR4742-201ENST00000581069 85 ntBASIC0.32□□□□□ -2.36
COL1A1P02452 MIR4753-201ENST00000585119 83 ntBASIC0.32□□□□□ -2.36
COL1A1P02452 AC091805.2-201ENST00000603848 235 ntBASIC0.32□□□□□ -2.36
COL1A1P02452 AC069431.2-201ENST00000604149 1099 ntBASIC0.32□□□□□ -2.36
COL1A1P02452 AC105148.1-201ENST00000604961 409 ntBASIC0.32□□□□□ -2.36
COL1A1P02452 GHRLOS.1-201ENST00000610995 70 ntBASIC0.32□□□□□ -2.36
COL1A1P02452 Pinc.1-201ENST00000616452 154 ntBASIC0.32□□□□□ -2.36
COL1A1P02452 HOXA11-AS1_6.1-201ENST00000620092 179 ntBASIC0.32□□□□□ -2.36
COL1A1P02452 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC0.32□□□□□ -2.36
COL1A1P02452 RNU6-336P-201ENST00000364891 107 ntBASIC0.31□□□□□ -2.36
COL1A1P02452 RNU6-157P-201ENST00000383957 107 ntBASIC0.31□□□□□ -2.36
COL1A1P02452 Y_RNA.476-201ENST00000384347 108 ntBASIC0.31□□□□□ -2.36
COL1A1P02452 RNU6-636P-201ENST00000384598 107 ntBASIC0.31□□□□□ -2.36
COL1A1P02452 RNU6-417P-201ENST00000384712 107 ntBASIC0.31□□□□□ -2.36
Retrieved 100 of 98,524 protein–RNA pairs in 104.6 ms