Protein–RNA interactions for Protein: O95484

CLDN9, Claudin-9, humanhuman

Predictions only

Length 217 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN9O95484 AC103705.1-201ENST00000619013 241 ntBASIC1.33□□□□□ -2.2
CLDN9O95484 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC1.33□□□□□ -2.2
CLDN9O95484 FER-210ENST00000628534 558 ntTSL 5 BASIC1.33□□□□□ -2.2
CLDN9O95484 MIR3974-201ENST00000637126 96 ntBASIC1.33□□□□□ -2.2
CLDN9O95484 ICE2P2-201ENST00000483823 2787 ntBASIC1.32□□□□□ -2.2
CLDN9O95484 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.32□□□□□ -2.2
CLDN9O95484 RNU6-562P-201ENST00000362731 107 ntBASIC1.32□□□□□ -2.2
CLDN9O95484 RNU6-82P-201ENST00000363970 107 ntBASIC1.32□□□□□ -2.2
CLDN9O95484 RNU6-1019P-201ENST00000364424 107 ntBASIC1.32□□□□□ -2.2
CLDN9O95484 Y_RNA.378-201ENST00000365652 113 ntBASIC1.32□□□□□ -2.2
CLDN9O95484 MIR300-201ENST00000401138 83 ntBASIC1.32□□□□□ -2.2
CLDN9O95484 RNA5SP494-201ENST00000410653 129 ntBASIC1.32□□□□□ -2.2
CLDN9O95484 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.32□□□□□ -2.2
CLDN9O95484 AC009474.2-201ENST00000451383 136 ntBASIC1.32□□□□□ -2.2
CLDN9O95484 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.32□□□□□ -2.2
CLDN9O95484 AC079140.3-201ENST00000511111 550 ntBASIC1.32□□□□□ -2.2
CLDN9O95484 SNORA19.2-201ENST00000516013 114 ntBASIC1.32□□□□□ -2.2
CLDN9O95484 RNU6-1069P-201ENST00000516612 133 ntBASIC1.32□□□□□ -2.2
CLDN9O95484 RNU1-92P-201ENST00000517017 135 ntBASIC1.32□□□□□ -2.2
CLDN9O95484 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.32□□□□□ -2.2
CLDN9O95484 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC1.32□□□□□ -2.2
CLDN9O95484 AP003128.1-201ENST00000531414 448 ntTSL 2 BASIC1.32□□□□□ -2.2
CLDN9O95484 AC016727.2-201ENST00000603988 621 ntBASIC1.32□□□□□ -2.2
CLDN9O95484 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC1.32□□□□□ -2.2
CLDN9O95484 AC139792.3-201ENST00000623525 224 ntBASIC1.32□□□□□ -2.2
CLDN9O95484 AC090582.1-201ENST00000636321 199 ntBASIC1.32□□□□□ -2.2
CLDN9O95484 Y_RNA.123-201ENST00000363338 102 ntBASIC1.31□□□□□ -2.2
CLDN9O95484 RNU6-1329P-201ENST00000365664 107 ntBASIC1.31□□□□□ -2.2
CLDN9O95484 RNU6-203P-201ENST00000384038 104 ntBASIC1.31□□□□□ -2.2
CLDN9O95484 MIR758-201ENST00000390227 88 ntBASIC1.31□□□□□ -2.2
CLDN9O95484 RNU6-360P-201ENST00000390944 104 ntBASIC1.31□□□□□ -2.2
CLDN9O95484 RNU1-78P-201ENST00000391248 165 ntBASIC1.31□□□□□ -2.2
CLDN9O95484 RNU6-955P-201ENST00000410497 104 ntBASIC1.31□□□□□ -2.2
CLDN9O95484 TIMM9P3-201ENST00000428659 274 ntBASIC1.31□□□□□ -2.2
CLDN9O95484 C8orf59P1-201ENST00000429930 303 ntBASIC1.31□□□□□ -2.2
CLDN9O95484 HMGN2P9-201ENST00000476875 229 ntBASIC1.31□□□□□ -2.2
CLDN9O95484 AC098862.1-201ENST00000504991 413 ntBASIC1.31□□□□□ -2.2
CLDN9O95484 AC084364.2-201ENST00000546924 395 ntBASIC1.31□□□□□ -2.2
CLDN9O95484 MIR5006-201ENST00000583027 110 ntBASIC1.31□□□□□ -2.2
CLDN9O95484 AC104458.1-201ENST00000608243 463 ntBASIC1.31□□□□□ -2.2
CLDN9O95484 MIR7974-201ENST00000615835 79 ntBASIC1.31□□□□□ -2.2
CLDN9O95484 GNAS-AS1_4.1-201ENST00000616546 112 ntBASIC1.31□□□□□ -2.2
CLDN9O95484 AC126177.8-201ENST00000618339 1015 ntBASIC1.31□□□□□ -2.2
CLDN9O95484 ZNF404-202ENST00000587539 1851 ntAPPRIS P2 TSL 5 BASIC1.31□□□□□ -2.2
CLDN9O95484 BRCA1-202ENST00000354071 4497 ntTSL 1 (best) BASIC1.3□□□□□ -2.2
CLDN9O95484 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.3□□□□□ -2.2
CLDN9O95484 Y_RNA.77-201ENST00000362962 107 ntBASIC1.3□□□□□ -2.2
CLDN9O95484 RNU6-968P-201ENST00000384076 107 ntBASIC1.3□□□□□ -2.2
CLDN9O95484 RNU6-38P-201ENST00000384085 107 ntBASIC1.3□□□□□ -2.2
CLDN9O95484 MIR549A-201ENST00000385268 96 ntBASIC1.3□□□□□ -2.2
CLDN9O95484 Y_RNA.582-201ENST00000391023 95 ntBASIC1.3□□□□□ -2.2
CLDN9O95484 AL117342.1-201ENST00000404861 406 ntBASIC1.3□□□□□ -2.2
CLDN9O95484 CDK8P2-201ENST00000415020 547 ntBASIC1.3□□□□□ -2.2
CLDN9O95484 AC060773.1-201ENST00000421698 310 ntBASIC1.3□□□□□ -2.2
CLDN9O95484 MTCO3P29-201ENST00000432119 779 ntBASIC1.3□□□□□ -2.2
CLDN9O95484 FTH1P12-201ENST00000432137 551 ntBASIC1.3□□□□□ -2.2
CLDN9O95484 AL158828.1-201ENST00000438582 197 ntTSL 5 BASIC1.3□□□□□ -2.2
CLDN9O95484 AC004386.2-201ENST00000441858 148 ntBASIC1.3□□□□□ -2.2
CLDN9O95484 RPS26P55-201ENST00000471178 356 ntBASIC1.3□□□□□ -2.2
CLDN9O95484 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.3□□□□□ -2.2
CLDN9O95484 AC091133.4-201ENST00000511142 308 ntBASIC1.3□□□□□ -2.2
CLDN9O95484 AC067942.3-201ENST00000512025 362 ntBASIC1.3□□□□□ -2.2
CLDN9O95484 AC011406.1-201ENST00000512440 370 ntBASIC1.3□□□□□ -2.2
CLDN9O95484 RNA5SP384-201ENST00000516615 116 ntBASIC1.3□□□□□ -2.2
CLDN9O95484 RNA5SP481-201ENST00000516814 122 ntBASIC1.3□□□□□ -2.2
CLDN9O95484 AC013417.1-201ENST00000549896 271 ntTSL 5 BASIC1.3□□□□□ -2.2
CLDN9O95484 SCOCP1-201ENST00000554676 349 ntBASIC1.3□□□□□ -2.2
CLDN9O95484 AC026470.2-201ENST00000561492 181 ntBASIC1.3□□□□□ -2.2
CLDN9O95484 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC1.3□□□□□ -2.2
CLDN9O95484 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.3□□□□□ -2.2
CLDN9O95484 MIR5692C1-201ENST00000585309 91 ntBASIC1.3□□□□□ -2.2
CLDN9O95484 AC095038.3-201ENST00000634439 195 ntBASIC1.3□□□□□ -2.2
CLDN9O95484 AL161722.3-201ENST00000605789 2983 ntBASIC1.3□□□□□ -2.2
CLDN9O95484 ZNF209P-201ENST00000593450 2304 ntBASIC1.29□□□□□ -2.2
CLDN9O95484 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC1.29□□□□□ -2.2
CLDN9O95484 RNU5B-2P-201ENST00000363036 113 ntBASIC1.29□□□□□ -2.2
CLDN9O95484 RNU4-20P-201ENST00000365601 151 ntBASIC1.29□□□□□ -2.2
CLDN9O95484 RNU6-1286P-201ENST00000383871 107 ntBASIC1.29□□□□□ -2.2
CLDN9O95484 Y_RNA.409-201ENST00000383990 98 ntBASIC1.29□□□□□ -2.2
CLDN9O95484 MRPS10P2-201ENST00000431226 381 ntBASIC1.29□□□□□ -2.2
CLDN9O95484 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC1.29□□□□□ -2.2
CLDN9O95484 AC004888.1-201ENST00000450480 547 ntTSL 2 BASIC1.29□□□□□ -2.2
CLDN9O95484 TPT1P7-201ENST00000458300 517 ntBASIC1.29□□□□□ -2.2
CLDN9O95484 Y_RNA.654-201ENST00000497848 106 ntBASIC1.29□□□□□ -2.2
CLDN9O95484 AC010486.3-201ENST00000511602 785 ntBASIC1.29□□□□□ -2.2
CLDN9O95484 AC019176.1-201ENST00000518519 225 ntBASIC1.29□□□□□ -2.2
CLDN9O95484 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC1.29□□□□□ -2.2
CLDN9O95484 AC091047.1-201ENST00000533344 552 ntTSL 4 BASIC1.29□□□□□ -2.2
CLDN9O95484 MRPS36P4-201ENST00000534436 298 ntBASIC1.29□□□□□ -2.2
CLDN9O95484 SNHG14-219ENST00000553134 470 ntTSL 2 BASIC1.29□□□□□ -2.2
CLDN9O95484 AP001330.5-201ENST00000607176 411 ntBASIC1.29□□□□□ -2.2
CLDN9O95484 RMST_3.1-201ENST00000611651 109 ntBASIC1.29□□□□□ -2.2
CLDN9O95484 TCL6_2.1-201ENST00000615162 119 ntBASIC1.29□□□□□ -2.2
CLDN9O95484 MIR6515-201ENST00000619843 57 ntBASIC1.29□□□□□ -2.2
CLDN9O95484 UHRF1BP1L-203ENST00000545232 4088 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
CLDN9O95484 ZGRF1-208ENST00000505019 6652 ntAPPRIS P1 TSL 5 BASIC1.29□□□□□ -2.2
CLDN9O95484 BX322639.1-202ENST00000423987 2213 ntBASIC1.28□□□□□ -2.2
CLDN9O95484 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC1.28□□□□□ -2.2
CLDN9O95484 CEP162-202ENST00000403245 5156 ntAPPRIS P1 TSL 5 BASIC1.28□□□□□ -2.2
CLDN9O95484 MIR302D-201ENST00000362275 68 ntBASIC1.28□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 103.3 ms