Protein–RNA interactions for Protein: O75112

LDB3, LIM domain-binding protein 3, humanhuman

Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3O75112 MIR3117-201ENST00000584034 78 ntBASIC2.44□□□□□ -2.02
LDB3O75112 RPL23AP88-201ENST00000605759 454 ntBASIC2.44□□□□□ -2.02
LDB3O75112 Z84484.1-202ENST00000612718 60 ntTSL 5 BASIC2.44□□□□□ -2.02
LDB3O75112 EFCAB3-202ENST00000450662 1694 ntTSL 5 BASIC2.44□□□□□ -2.02
LDB3O75112 APC-201ENST00000257430 10701 ntAPPRIS P1 TSL 5 BASIC2.43□□□□□ -2.02
LDB3O75112 CYLC2-201ENST00000374798 2171 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
LDB3O75112 ZNF680-202ENST00000447137 2159 ntTSL 2 BASIC2.43□□□□□ -2.02
LDB3O75112 AC080128.1-201ENST00000474389 1917 ntBASIC2.43□□□□□ -2.02
LDB3O75112 RNA5SP361-201ENST00000362686 118 ntBASIC2.43□□□□□ -2.02
LDB3O75112 RNU6-1301P-201ENST00000362724 104 ntBASIC2.43□□□□□ -2.02
LDB3O75112 U8.9-201ENST00000365667 134 ntBASIC2.43□□□□□ -2.02
LDB3O75112 RNU6-968P-201ENST00000384076 107 ntBASIC2.43□□□□□ -2.02
LDB3O75112 SNORA29-201ENST00000384183 140 ntBASIC2.43□□□□□ -2.02
LDB3O75112 RNU6-17P-201ENST00000384245 107 ntBASIC2.43□□□□□ -2.02
LDB3O75112 RNU6-18P-201ENST00000384527 107 ntBASIC2.43□□□□□ -2.02
LDB3O75112 Y_RNA.526-201ENST00000384572 110 ntBASIC2.43□□□□□ -2.02
LDB3O75112 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC2.43□□□□□ -2.02
LDB3O75112 SNORD115-46-201ENST00000390982 71 ntBASIC2.43□□□□□ -2.02
LDB3O75112 RNA5SP213-201ENST00000391031 106 ntBASIC2.43□□□□□ -2.02
LDB3O75112 RNU6-1140P-201ENST00000410517 106 ntBASIC2.43□□□□□ -2.02
LDB3O75112 EIF1AXP1-201ENST00000419267 435 ntBASIC2.43□□□□□ -2.02
LDB3O75112 AC097662.1-205ENST00000433324 241 ntTSL 5 BASIC2.43□□□□□ -2.02
LDB3O75112 AL445687.1-201ENST00000439946 251 ntBASIC2.43□□□□□ -2.02
LDB3O75112 RPL39P38-201ENST00000467018 153 ntBASIC2.43□□□□□ -2.02
LDB3O75112 SNRPGP7-201ENST00000469016 106 ntBASIC2.43□□□□□ -2.02
LDB3O75112 HMGB1P35-201ENST00000503360 598 ntBASIC2.43□□□□□ -2.02
LDB3O75112 LINC02233-201ENST00000513718 358 ntTSL 3 BASIC2.43□□□□□ -2.02
LDB3O75112 RNU7-175P-201ENST00000515915 61 ntBASIC2.43□□□□□ -2.02
LDB3O75112 Y_RNA.706-201ENST00000516933 99 ntBASIC2.43□□□□□ -2.02
LDB3O75112 AC022868.1-201ENST00000517767 391 ntBASIC2.43□□□□□ -2.02
LDB3O75112 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC2.43□□□□□ -2.02
LDB3O75112 SCARNA4-201ENST00000629045 128 ntBASIC2.43□□□□□ -2.02
LDB3O75112 AL450472.1-202ENST00000637286 180 ntBASIC2.43□□□□□ -2.02
LDB3O75112 OR4K2-204ENST00000641885 8681 ntAPPRIS P1 BASIC2.43□□□□□ -2.02
LDB3O75112 AL359854.1-201ENST00000614203 1594 ntBASIC2.43□□□□□ -2.02
LDB3O75112 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.43□□□□□ -2.02
LDB3O75112 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.43□□□□□ -2.02
LDB3O75112 ZNF117-204ENST00000620222 5317 ntAPPRIS P1 TSL 1 (best) BASIC2.43□□□□□ -2.02
LDB3O75112 RNU6-1286P-201ENST00000383871 107 ntBASIC2.42□□□□□ -2.02
LDB3O75112 RNU6-142P-201ENST00000384019 107 ntBASIC2.42□□□□□ -2.02
LDB3O75112 RNU6-926P-201ENST00000384075 107 ntBASIC2.42□□□□□ -2.02
LDB3O75112 RNU6-937P-201ENST00000384325 106 ntBASIC2.42□□□□□ -2.02
LDB3O75112 RNY3P4-201ENST00000384428 101 ntBASIC2.42□□□□□ -2.02
LDB3O75112 Y_RNA.541-201ENST00000384640 113 ntBASIC2.42□□□□□ -2.02
LDB3O75112 MIR592-201ENST00000384959 97 ntBASIC2.42□□□□□ -2.02
LDB3O75112 MIR32-201ENST00000384965 70 ntBASIC2.42□□□□□ -2.02
LDB3O75112 RN7SKP61-201ENST00000410642 295 ntBASIC2.42□□□□□ -2.02
LDB3O75112 CYCSP48-201ENST00000417124 323 ntBASIC2.42□□□□□ -2.02
LDB3O75112 AC139712.2-201ENST00000424302 339 ntBASIC2.42□□□□□ -2.02
LDB3O75112 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC2.42□□□□□ -2.02
LDB3O75112 AC078809.1-201ENST00000427601 140 ntBASIC2.42□□□□□ -2.02
LDB3O75112 AL353705.4-201ENST00000449661 238 ntBASIC2.42□□□□□ -2.02
LDB3O75112 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.42□□□□□ -2.02
LDB3O75112 AP000870.1-201ENST00000472927 406 ntBASIC2.42□□□□□ -2.02
LDB3O75112 SRI-210ENST00000490437 570 ntTSL 2 BASIC2.42□□□□□ -2.02
LDB3O75112 AC016632.1-201ENST00000503994 196 ntBASIC2.42□□□□□ -2.02
LDB3O75112 RNA5SP282-201ENST00000516355 108 ntBASIC2.42□□□□□ -2.02
LDB3O75112 RNU6-1012P-201ENST00000516606 109 ntBASIC2.42□□□□□ -2.02
LDB3O75112 DEFB108E-201ENST00000524692 240 ntBASIC2.42□□□□□ -2.02
LDB3O75112 AC115990.1-201ENST00000526957 301 ntBASIC2.42□□□□□ -2.02
LDB3O75112 HSPE1P4-201ENST00000550617 308 ntBASIC2.42□□□□□ -2.02
LDB3O75112 UBL5P4-201ENST00000562584 236 ntBASIC2.42□□□□□ -2.02
LDB3O75112 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC2.42□□□□□ -2.02
LDB3O75112 AC090617.3-201ENST00000573670 475 ntBASIC2.42□□□□□ -2.02
LDB3O75112 MIR4765-201ENST00000585007 77 ntBASIC2.42□□□□□ -2.02
LDB3O75112 AL356280.1-201ENST00000603614 379 ntBASIC2.42□□□□□ -2.02
LDB3O75112 CENPF-206ENST00000614578 528 ntTSL 5 BASIC2.42□□□□□ -2.02
LDB3O75112 AC240442.1-201ENST00000616055 283 ntBASIC2.42□□□□□ -2.02
LDB3O75112 MIR7157-201ENST00000635801 60 ntBASIC2.42□□□□□ -2.02
LDB3O75112 HMHB1-202ENST00000638299 126 ntAPPRIS P2 TSL 1 (best) BASIC2.42□□□□□ -2.02
LDB3O75112 SEL1L2-201ENST00000284951 2224 ntAPPRIS P1 TSL 5 BASIC2.42□□□□□ -2.02
LDB3O75112 ZMYM1-203ENST00000373330 4203 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
LDB3O75112 MACC1-202ENST00000400331 9159 ntAPPRIS P1 TSL 2 BASIC2.41□□□□□ -2.02
LDB3O75112 FAM46D-201ENST00000308293 3011 ntAPPRIS P1 TSL 1 (best) BASIC2.41□□□□□ -2.02
LDB3O75112 RNU6-212P-201ENST00000362642 104 ntBASIC2.41□□□□□ -2.02
LDB3O75112 RNU5B-2P-201ENST00000363036 113 ntBASIC2.41□□□□□ -2.02
LDB3O75112 RNU6-1285P-201ENST00000363480 105 ntBASIC2.41□□□□□ -2.02
LDB3O75112 SNORD27-201ENST00000363981 72 ntBASIC2.41□□□□□ -2.02
LDB3O75112 RNU4-9P-201ENST00000364951 139 ntBASIC2.41□□□□□ -2.02
LDB3O75112 MTCYBP2-201ENST00000407745 171 ntBASIC2.41□□□□□ -2.02
LDB3O75112 MIR548I3-201ENST00000408378 149 ntBASIC2.41□□□□□ -2.02
LDB3O75112 MIR548I1-201ENST00000408810 149 ntBASIC2.41□□□□□ -2.02
LDB3O75112 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC2.41□□□□□ -2.02
LDB3O75112 AP000705.1-201ENST00000454567 350 ntBASIC2.41□□□□□ -2.02
LDB3O75112 AC112771.1-201ENST00000463581 102 ntBASIC2.41□□□□□ -2.02
LDB3O75112 AC087477.1-201ENST00000465747 340 ntBASIC2.41□□□□□ -2.02
LDB3O75112 AC095059.1-201ENST00000502570 349 ntTSL 5 BASIC2.41□□□□□ -2.02
LDB3O75112 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.41□□□□□ -2.02
LDB3O75112 Y_RNA.713-201ENST00000517013 96 ntBASIC2.41□□□□□ -2.02
LDB3O75112 NKAIN2-205ENST00000546092 148 ntTSL 5 BASIC2.41□□□□□ -2.02
LDB3O75112 AC079598.5-201ENST00000547460 117 ntBASIC2.41□□□□□ -2.02
LDB3O75112 AC016256.1-201ENST00000547971 354 ntBASIC2.41□□□□□ -2.02
LDB3O75112 MIR4659A-201ENST00000580269 81 ntBASIC2.41□□□□□ -2.02
LDB3O75112 AC130469.1-201ENST00000597256 388 ntTSL 5 BASIC2.41□□□□□ -2.02
LDB3O75112 MIR376A1-201ENST00000616574 68 ntBASIC2.41□□□□□ -2.02
LDB3O75112 SCARNA15.3-201ENST00000626315 122 ntBASIC2.41□□□□□ -2.02
LDB3O75112 SCARNA4.1-201ENST00000628597 123 ntBASIC2.41□□□□□ -2.02
LDB3O75112 PRPSAP2-229ENST00000628609 192 ntTSL 5 BASIC2.41□□□□□ -2.02
LDB3O75112 RGPD6-201ENST00000329516 7165 ntAPPRIS P1 TSL 1 (best) BASIC2.4□□□□□ -2.02
LDB3O75112 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.4□□□□□ -2.02
Retrieved 100 of 98,524 protein–RNA pairs in 109 ms