Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 TAB2-205ENST00000538427 4240 ntAPPRIS P1 TSL 5 BASIC1.96□□□□□ -2.1
PCDHGA1Q9Y5H4 RNU5B-2P-201ENST00000363036 113 ntBASIC1.96□□□□□ -2.1
PCDHGA1Q9Y5H4 Y_RNA.151-201ENST00000363566 112 ntBASIC1.96□□□□□ -2.1
PCDHGA1Q9Y5H4 RNU6-743P-201ENST00000364151 106 ntBASIC1.96□□□□□ -2.1
PCDHGA1Q9Y5H4 RNU6-1286P-201ENST00000383871 107 ntBASIC1.96□□□□□ -2.1
PCDHGA1Q9Y5H4 SNORA8-201ENST00000384574 139 ntBASIC1.96□□□□□ -2.1
PCDHGA1Q9Y5H4 AC009480.1-201ENST00000402410 412 ntTSL 3 BASIC1.96□□□□□ -2.1
PCDHGA1Q9Y5H4 MIR1283-2-201ENST00000408621 87 ntBASIC1.96□□□□□ -2.1
PCDHGA1Q9Y5H4 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC1.96□□□□□ -2.1
PCDHGA1Q9Y5H4 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC1.96□□□□□ -2.1
PCDHGA1Q9Y5H4 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC1.96□□□□□ -2.1
PCDHGA1Q9Y5H4 AL034345.2-203ENST00000453417 383 ntTSL 3 BASIC1.96□□□□□ -2.1
PCDHGA1Q9Y5H4 PCMTD1P1-201ENST00000455560 355 ntBASIC1.96□□□□□ -2.1
PCDHGA1Q9Y5H4 AC104435.1-201ENST00000483483 166 ntBASIC1.96□□□□□ -2.1
PCDHGA1Q9Y5H4 MIR449C-201ENST00000516047 92 ntBASIC1.96□□□□□ -2.1
PCDHGA1Q9Y5H4 MTND4LP26-201ENST00000518144 282 ntBASIC1.96□□□□□ -2.1
PCDHGA1Q9Y5H4 AF235103.2-201ENST00000525753 346 ntBASIC1.96□□□□□ -2.1
PCDHGA1Q9Y5H4 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC1.96□□□□□ -2.1
PCDHGA1Q9Y5H4 SNORA59B-202ENST00000578183 701 ntBASIC1.96□□□□□ -2.1
PCDHGA1Q9Y5H4 AC018638.8-201ENST00000588755 281 ntBASIC1.96□□□□□ -2.1
PCDHGA1Q9Y5H4 MIR3976-201ENST00000606807 139 ntBASIC1.96□□□□□ -2.1
PCDHGA1Q9Y5H4 TMEM154-204ENST00000613578 486 ntAPPRIS ALT2 TSL 5 BASIC1.96□□□□□ -2.1
PCDHGA1Q9Y5H4 RNU6-1164P-201ENST00000364428 107 ntBASIC1.95□□□□□ -2.1
PCDHGA1Q9Y5H4 RNU6-234P-201ENST00000365229 104 ntBASIC1.95□□□□□ -2.1
PCDHGA1Q9Y5H4 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC1.95□□□□□ -2.1
PCDHGA1Q9Y5H4 RNU6-1013P-201ENST00000384180 107 ntBASIC1.95□□□□□ -2.1
PCDHGA1Q9Y5H4 RNU6ATAC25P-201ENST00000408798 117 ntBASIC1.95□□□□□ -2.1
PCDHGA1Q9Y5H4 NFU1P2-201ENST00000448700 469 ntBASIC1.95□□□□□ -2.1
PCDHGA1Q9Y5H4 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC1.95□□□□□ -2.1
PCDHGA1Q9Y5H4 AC112492.4-201ENST00000456549 352 ntBASIC1.95□□□□□ -2.1
PCDHGA1Q9Y5H4 RN7SKP210-201ENST00000459176 261 ntBASIC1.95□□□□□ -2.1
PCDHGA1Q9Y5H4 AC130509.1-201ENST00000464158 433 ntBASIC1.95□□□□□ -2.1
PCDHGA1Q9Y5H4 AC069439.1-201ENST00000494739 167 ntBASIC1.95□□□□□ -2.1
PCDHGA1Q9Y5H4 KRTAP13-6P-201ENST00000508999 371 ntBASIC1.95□□□□□ -2.1
PCDHGA1Q9Y5H4 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC1.95□□□□□ -2.1
PCDHGA1Q9Y5H4 RNA5SP490-201ENST00000517141 136 ntBASIC1.95□□□□□ -2.1
PCDHGA1Q9Y5H4 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.95□□□□□ -2.1
PCDHGA1Q9Y5H4 AP005639.2-201ENST00000527592 928 ntBASIC1.95□□□□□ -2.1
PCDHGA1Q9Y5H4 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC1.95□□□□□ -2.1
PCDHGA1Q9Y5H4 MRPS36P4-201ENST00000534436 298 ntBASIC1.95□□□□□ -2.1
PCDHGA1Q9Y5H4 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC1.95□□□□□ -2.1
PCDHGA1Q9Y5H4 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.95□□□□□ -2.1
PCDHGA1Q9Y5H4 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC1.95□□□□□ -2.1
PCDHGA1Q9Y5H4 AC146944.4-201ENST00000602697 718 ntBASIC1.95□□□□□ -2.1
PCDHGA1Q9Y5H4 U6atac.1-201ENST00000616025 117 ntBASIC1.95□□□□□ -2.1
PCDHGA1Q9Y5H4 AC018692.1-202ENST00000623559 676 ntTSL 5 BASIC1.95□□□□□ -2.1
PCDHGA1Q9Y5H4 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.95□□□□□ -2.1
PCDHGA1Q9Y5H4 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.94□□□□□ -2.1
PCDHGA1Q9Y5H4 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC1.94□□□□□ -2.1
PCDHGA1Q9Y5H4 CBX3P1-201ENST00000325243 554 ntBASIC1.94□□□□□ -2.1
PCDHGA1Q9Y5H4 Y_RNA.226-201ENST00000364337 114 ntBASIC1.94□□□□□ -2.1
PCDHGA1Q9Y5H4 RNU6-790P-201ENST00000384479 105 ntBASIC1.94□□□□□ -2.1
PCDHGA1Q9Y5H4 MIR208B-201ENST00000401172 77 ntBASIC1.94□□□□□ -2.1
PCDHGA1Q9Y5H4 BX510359.4-201ENST00000423750 193 ntBASIC1.94□□□□□ -2.1
PCDHGA1Q9Y5H4 IKZF2-209ENST00000442445 551 ntTSL 5 BASIC1.94□□□□□ -2.1
PCDHGA1Q9Y5H4 AL353572.1-201ENST00000442490 417 ntBASIC1.94□□□□□ -2.1
PCDHGA1Q9Y5H4 AL035666.1-201ENST00000446195 348 ntBASIC1.94□□□□□ -2.1
PCDHGA1Q9Y5H4 HMGN2P18-201ENST00000450680 270 ntBASIC1.94□□□□□ -2.1
PCDHGA1Q9Y5H4 RNU6-358P-201ENST00000516564 75 ntBASIC1.94□□□□□ -2.1
PCDHGA1Q9Y5H4 RNU6-1088P-201ENST00000516850 104 ntBASIC1.94□□□□□ -2.1
PCDHGA1Q9Y5H4 AC110588.1-201ENST00000559699 137 ntBASIC1.94□□□□□ -2.1
PCDHGA1Q9Y5H4 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC1.94□□□□□ -2.1
PCDHGA1Q9Y5H4 Y_RNA.301-201ENST00000364990 103 ntBASIC1.93□□□□□ -2.1
PCDHGA1Q9Y5H4 SNORA32.2-201ENST00000384049 122 ntBASIC1.93□□□□□ -2.1
PCDHGA1Q9Y5H4 RNU6-968P-201ENST00000384076 107 ntBASIC1.93□□□□□ -2.1
PCDHGA1Q9Y5H4 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC1.93□□□□□ -2.1
PCDHGA1Q9Y5H4 RNA5SP494-201ENST00000410653 129 ntBASIC1.93□□□□□ -2.1
PCDHGA1Q9Y5H4 RNU2-41P-201ENST00000410991 178 ntBASIC1.93□□□□□ -2.1
PCDHGA1Q9Y5H4 LINC01509-202ENST00000423523 408 ntTSL 3 BASIC1.93□□□□□ -2.1
PCDHGA1Q9Y5H4 AC108667.1-201ENST00000428618 249 ntBASIC1.93□□□□□ -2.1
PCDHGA1Q9Y5H4 MTND4LP16-201ENST00000440828 295 ntBASIC1.93□□□□□ -2.1
PCDHGA1Q9Y5H4 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC1.93□□□□□ -2.1
PCDHGA1Q9Y5H4 RNU1-131P-201ENST00000458943 161 ntBASIC1.93□□□□□ -2.1
PCDHGA1Q9Y5H4 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.93□□□□□ -2.1
PCDHGA1Q9Y5H4 RNU6-566P-201ENST00000516790 107 ntBASIC1.93□□□□□ -2.1
PCDHGA1Q9Y5H4 AP003033.1-201ENST00000527244 415 ntBASIC1.93□□□□□ -2.1
PCDHGA1Q9Y5H4 AC087441.2-201ENST00000529141 262 ntBASIC1.93□□□□□ -2.1
PCDHGA1Q9Y5H4 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.93□□□□□ -2.1
PCDHGA1Q9Y5H4 AC007450.1-201ENST00000536492 188 ntTSL 3 BASIC1.93□□□□□ -2.1
PCDHGA1Q9Y5H4 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC1.93□□□□□ -2.1
PCDHGA1Q9Y5H4 snoU13.31-201ENST00000607291 104 ntBASIC1.93□□□□□ -2.1
PCDHGA1Q9Y5H4 Y_RNA.783-201ENST00000613546 102 ntBASIC1.93□□□□□ -2.1
PCDHGA1Q9Y5H4 AC093913.1-201ENST00000614178 329 ntBASIC1.93□□□□□ -2.1
PCDHGA1Q9Y5H4 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.92□□□□□ -2.1
PCDHGA1Q9Y5H4 SNORD50.1-201ENST00000362987 71 ntBASIC1.92□□□□□ -2.1
PCDHGA1Q9Y5H4 Y_RNA.86-201ENST00000363020 111 ntBASIC1.92□□□□□ -2.1
PCDHGA1Q9Y5H4 RNU6-23P-201ENST00000363283 107 ntBASIC1.92□□□□□ -2.1
PCDHGA1Q9Y5H4 MIR517A-201ENST00000385001 87 ntBASIC1.92□□□□□ -2.1
PCDHGA1Q9Y5H4 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
PCDHGA1Q9Y5H4 RNU6-1093P-201ENST00000391194 107 ntBASIC1.92□□□□□ -2.1
PCDHGA1Q9Y5H4 SNORA40.18-201ENST00000391200 128 ntBASIC1.92□□□□□ -2.1
PCDHGA1Q9Y5H4 RNU6-510P-201ENST00000391239 108 ntBASIC1.92□□□□□ -2.1
PCDHGA1Q9Y5H4 RNA5SP338-201ENST00000410495 85 ntBASIC1.92□□□□□ -2.1
PCDHGA1Q9Y5H4 RPS26P42-201ENST00000413485 326 ntBASIC1.92□□□□□ -2.1
PCDHGA1Q9Y5H4 DAP3P1-201ENST00000441522 278 ntBASIC1.92□□□□□ -2.1
PCDHGA1Q9Y5H4 snoU13.6-201ENST00000458785 104 ntBASIC1.92□□□□□ -2.1
PCDHGA1Q9Y5H4 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC1.92□□□□□ -2.1
PCDHGA1Q9Y5H4 MTCO2P30-201ENST00000503662 364 ntBASIC1.92□□□□□ -2.1
PCDHGA1Q9Y5H4 RNU4-49P-201ENST00000516080 140 ntBASIC1.92□□□□□ -2.1
PCDHGA1Q9Y5H4 SNORA44.1-201ENST00000517031 108 ntBASIC1.92□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 109.8 ms