Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 AC078809.1-201ENST00000427601 140 ntBASIC1.24□□□□□ -2.21
SHANK1Q9Y566 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.24□□□□□ -2.21
SHANK1Q9Y566 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC1.24□□□□□ -2.21
SHANK1Q9Y566 HYDIN2-201ENST00000493714 554 ntTSL 4 BASIC1.24□□□□□ -2.21
SHANK1Q9Y566 CCDC34P1-201ENST00000507441 517 ntBASIC1.24□□□□□ -2.21
SHANK1Q9Y566 AC025465.4-201ENST00000513422 638 ntBASIC1.24□□□□□ -2.21
SHANK1Q9Y566 SNORA25.11-201ENST00000515935 105 ntBASIC1.24□□□□□ -2.21
SHANK1Q9Y566 RNA5SP476-201ENST00000516613 103 ntBASIC1.24□□□□□ -2.21
SHANK1Q9Y566 AL118558.2-201ENST00000556294 238 ntBASIC1.24□□□□□ -2.21
SHANK1Q9Y566 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC1.24□□□□□ -2.21
SHANK1Q9Y566 B3GNTL1P2-201ENST00000603673 288 ntBASIC1.24□□□□□ -2.21
SHANK1Q9Y566 AC092747.3-201ENST00000603769 301 ntBASIC1.24□□□□□ -2.21
SHANK1Q9Y566 AC107304.1-201ENST00000604229 296 ntBASIC1.24□□□□□ -2.21
SHANK1Q9Y566 AP001836.1-201ENST00000604675 523 ntBASIC1.24□□□□□ -2.21
SHANK1Q9Y566 DCAF17-212ENST00000611110 975 ntTSL 1 (best) BASIC1.24□□□□□ -2.21
SHANK1Q9Y566 U4atac.1-201ENST00000618345 95 ntBASIC1.24□□□□□ -2.21
SHANK1Q9Y566 AC009033.1-201ENST00000624279 431 ntBASIC1.24□□□□□ -2.21
SHANK1Q9Y566 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC1.24□□□□□ -2.21
SHANK1Q9Y566 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.24□□□□□ -2.21
SHANK1Q9Y566 RNU6-1285P-201ENST00000363480 105 ntBASIC1.23□□□□□ -2.21
SHANK1Q9Y566 RNU4-41P-201ENST00000364426 143 ntBASIC1.23□□□□□ -2.21
SHANK1Q9Y566 MIR561-201ENST00000385216 97 ntBASIC1.23□□□□□ -2.21
SHANK1Q9Y566 SNORA40.19-201ENST00000390846 128 ntBASIC1.23□□□□□ -2.21
SHANK1Q9Y566 AL357139.1-201ENST00000407792 426 ntBASIC1.23□□□□□ -2.21
SHANK1Q9Y566 RNU6-908P-201ENST00000410160 94 ntBASIC1.23□□□□□ -2.21
SHANK1Q9Y566 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.23□□□□□ -2.21
SHANK1Q9Y566 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC1.23□□□□□ -2.21
SHANK1Q9Y566 RNU6ATAC13P-201ENST00000516152 131 ntBASIC1.23□□□□□ -2.21
SHANK1Q9Y566 SNORA31.16-201ENST00000516773 139 ntBASIC1.23□□□□□ -2.21
SHANK1Q9Y566 RNU6-566P-201ENST00000516790 107 ntBASIC1.23□□□□□ -2.21
SHANK1Q9Y566 AC100801.1-202ENST00000518266 371 ntTSL 3 BASIC1.23□□□□□ -2.21
SHANK1Q9Y566 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC1.23□□□□□ -2.21
SHANK1Q9Y566 AL133215.3-201ENST00000609801 448 ntBASIC1.23□□□□□ -2.21
SHANK1Q9Y566 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC1.23□□□□□ -2.21
SHANK1Q9Y566 RNU1-58P-201ENST00000362413 163 ntBASIC1.23□□□□□ -2.21
SHANK1Q9Y566 Y_RNA.151-201ENST00000363566 112 ntBASIC1.23□□□□□ -2.21
SHANK1Q9Y566 RNU6-944P-201ENST00000364023 107 ntBASIC1.23□□□□□ -2.21
SHANK1Q9Y566 RNU6-534P-201ENST00000364877 106 ntBASIC1.23□□□□□ -2.21
SHANK1Q9Y566 RNU6-1080P-201ENST00000383982 107 ntBASIC1.23□□□□□ -2.21
SHANK1Q9Y566 RNU6-214P-201ENST00000384130 107 ntBASIC1.23□□□□□ -2.21
SHANK1Q9Y566 MIR524-201ENST00000385242 87 ntBASIC1.23□□□□□ -2.21
SHANK1Q9Y566 MIR450B-201ENST00000401182 78 ntBASIC1.23□□□□□ -2.21
SHANK1Q9Y566 RPL31P63-201ENST00000422565 375 ntBASIC1.23□□□□□ -2.21
SHANK1Q9Y566 AL606489.2-201ENST00000433886 234 ntBASIC1.23□□□□□ -2.21
SHANK1Q9Y566 AC005154.1-208ENST00000440438 353 ntTSL 5 BASIC1.23□□□□□ -2.21
SHANK1Q9Y566 OR2AQ1P-201ENST00000451972 200 ntBASIC1.23□□□□□ -2.21
SHANK1Q9Y566 SCARNA18-201ENST00000459004 134 ntBASIC1.23□□□□□ -2.21
SHANK1Q9Y566 AC007547.1-201ENST00000462177 490 ntBASIC1.23□□□□□ -2.21
SHANK1Q9Y566 LINC00971-201ENST00000482721 535 ntTSL 2 BASIC1.23□□□□□ -2.21
SHANK1Q9Y566 RNU7-30P-201ENST00000516835 62 ntBASIC1.23□□□□□ -2.21
SHANK1Q9Y566 AP003033.1-201ENST00000527244 415 ntBASIC1.23□□□□□ -2.21
SHANK1Q9Y566 MIR4658-201ENST00000584344 65 ntBASIC1.23□□□□□ -2.21
SHANK1Q9Y566 AC092794.1-201ENST00000612734 582 ntBASIC1.23□□□□□ -2.21
SHANK1Q9Y566 IL6ST-203ENST00000381287 8667 ntTSL 5 BASIC1.22□□□□□ -2.21
SHANK1Q9Y566 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.22□□□□□ -2.21
SHANK1Q9Y566 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC1.22□□□□□ -2.21
SHANK1Q9Y566 MTND5P9-201ENST00000503854 1755 ntBASIC1.22□□□□□ -2.21
SHANK1Q9Y566 MIR17-201ENST00000385012 84 ntBASIC1.22□□□□□ -2.21
SHANK1Q9Y566 MIR1277-201ENST00000408536 78 ntBASIC1.22□□□□□ -2.21
SHANK1Q9Y566 SRIP3-201ENST00000413200 219 ntBASIC1.22□□□□□ -2.21
SHANK1Q9Y566 AL031274.1-201ENST00000450334 232 ntBASIC1.22□□□□□ -2.21
SHANK1Q9Y566 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC1.22□□□□□ -2.21
SHANK1Q9Y566 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC1.22□□□□□ -2.21
SHANK1Q9Y566 HMGN2P26-201ENST00000463169 339 ntBASIC1.22□□□□□ -2.21
SHANK1Q9Y566 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC1.22□□□□□ -2.21
SHANK1Q9Y566 AC110799.1-201ENST00000509098 449 ntTSL 3 BASIC1.22□□□□□ -2.21
SHANK1Q9Y566 RNU6-718P-201ENST00000516166 105 ntBASIC1.22□□□□□ -2.21
SHANK1Q9Y566 AC090592.1-203ENST00000533942 575 ntTSL 3 BASIC1.22□□□□□ -2.21
SHANK1Q9Y566 AC010525.2-201ENST00000590920 195 ntBASIC1.22□□□□□ -2.21
SHANK1Q9Y566 AC078899.2-201ENST00000595282 212 ntBASIC1.22□□□□□ -2.21
SHANK1Q9Y566 AC078795.3-201ENST00000602913 472 ntBASIC1.22□□□□□ -2.21
SHANK1Q9Y566 MIR8076-201ENST00000611401 83 ntBASIC1.22□□□□□ -2.21
SHANK1Q9Y566 IST1-227ENST00000626438 126 ntTSL 5 BASIC1.22□□□□□ -2.21
SHANK1Q9Y566 SNORA38-201ENST00000363946 132 ntBASIC1.21□□□□□ -2.22
SHANK1Q9Y566 RNU6-843P-201ENST00000384454 104 ntBASIC1.21□□□□□ -2.22
SHANK1Q9Y566 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC1.21□□□□□ -2.22
SHANK1Q9Y566 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
SHANK1Q9Y566 RNU6-325P-201ENST00000411132 105 ntBASIC1.21□□□□□ -2.22
SHANK1Q9Y566 AC005062.1-207ENST00000418442 587 ntTSL 3 BASIC1.21□□□□□ -2.22
SHANK1Q9Y566 AL353689.1-201ENST00000438895 199 ntBASIC1.21□□□□□ -2.22
SHANK1Q9Y566 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC1.21□□□□□ -2.22
SHANK1Q9Y566 MTCO2P30-201ENST00000503662 364 ntBASIC1.21□□□□□ -2.22
SHANK1Q9Y566 AC011352.1-201ENST00000512300 793 ntBASIC1.21□□□□□ -2.22
SHANK1Q9Y566 Y_RNA.665-201ENST00000516177 98 ntBASIC1.21□□□□□ -2.22
SHANK1Q9Y566 RNU6-965P-201ENST00000516721 96 ntBASIC1.21□□□□□ -2.22
SHANK1Q9Y566 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC1.21□□□□□ -2.22
SHANK1Q9Y566 MRPS36P4-201ENST00000534436 298 ntBASIC1.21□□□□□ -2.22
SHANK1Q9Y566 CYP4A27P-201ENST00000567218 190 ntBASIC1.21□□□□□ -2.22
SHANK1Q9Y566 AC011712.1-201ENST00000588959 234 ntBASIC1.21□□□□□ -2.22
SHANK1Q9Y566 AC018889.1-201ENST00000605372 397 ntBASIC1.21□□□□□ -2.22
SHANK1Q9Y566 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.21□□□□□ -2.22
SHANK1Q9Y566 CEP57-213ENST00000541150 2911 ntAPPRIS ALT2 TSL 5 BASIC1.21□□□□□ -2.22
SHANK1Q9Y566 Y_RNA.409-201ENST00000383990 98 ntBASIC1.21□□□□□ -2.22
SHANK1Q9Y566 RNU6-784P-201ENST00000384330 106 ntBASIC1.21□□□□□ -2.22
SHANK1Q9Y566 RPS26P42-201ENST00000413485 326 ntBASIC1.21□□□□□ -2.22
SHANK1Q9Y566 AC007098.1-201ENST00000420122 367 ntBASIC1.21□□□□□ -2.22
SHANK1Q9Y566 AC009468.2-201ENST00000457372 366 ntTSL 5 BASIC1.21□□□□□ -2.22
SHANK1Q9Y566 AC016632.1-201ENST00000503994 196 ntBASIC1.21□□□□□ -2.22
SHANK1Q9Y566 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC1.21□□□□□ -2.22
SHANK1Q9Y566 AK3P2-201ENST00000507976 429 ntBASIC1.21□□□□□ -2.22
Retrieved 100 of 98,524 protein–RNA pairs in 142.1 ms