Protein–RNA interactions for Protein: Q9UKF6

CPSF3, Cleavage and polyadenylation specificity factor subunit 3, humanhuman

Known RBP Predictions only

Length 684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3Q9UKF6 RNU6-876P-201ENST00000391295 104 ntBASIC2.08□□□□□ -2.08
CPSF3Q9UKF6 RNA5SP338-201ENST00000410495 85 ntBASIC2.08□□□□□ -2.08
CPSF3Q9UKF6 RNU2-40P-201ENST00000410833 196 ntBASIC2.08□□□□□ -2.08
CPSF3Q9UKF6 SRIP3-201ENST00000413200 219 ntBASIC2.08□□□□□ -2.08
CPSF3Q9UKF6 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC2.08□□□□□ -2.08
CPSF3Q9UKF6 AC069528.1-201ENST00000490344 705 ntTSL 3 BASIC2.08□□□□□ -2.08
CPSF3Q9UKF6 AC091976.1-202ENST00000509211 630 ntTSL 3 BASIC2.08□□□□□ -2.08
CPSF3Q9UKF6 AC093259.1-201ENST00000509755 300 ntBASIC2.08□□□□□ -2.08
CPSF3Q9UKF6 AC010457.1-201ENST00000510469 458 ntTSL 3 BASIC2.08□□□□□ -2.08
CPSF3Q9UKF6 AC110588.1-201ENST00000559699 137 ntBASIC2.08□□□□□ -2.08
CPSF3Q9UKF6 AC008749.1-201ENST00000597650 306 ntBASIC2.08□□□□□ -2.08
CPSF3Q9UKF6 AP000654.2-201ENST00000605633 586 ntBASIC2.08□□□□□ -2.08
CPSF3Q9UKF6 AC098657.3-201ENST00000620434 263 ntBASIC2.08□□□□□ -2.08
CPSF3Q9UKF6 AC091932.3-201ENST00000624223 323 ntBASIC2.08□□□□□ -2.08
CPSF3Q9UKF6 CENPCP1-201ENST00000533085 2578 ntBASIC2.08□□□□□ -2.08
CPSF3Q9UKF6 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC2.08□□□□□ -2.08
CPSF3Q9UKF6 AL359851.1-201ENST00000569460 4997 ntBASIC2.08□□□□□ -2.08
CPSF3Q9UKF6 RNU6-1059P-201ENST00000363752 98 ntBASIC2.07□□□□□ -2.08
CPSF3Q9UKF6 Y_RNA.390-201ENST00000383932 102 ntBASIC2.07□□□□□ -2.08
CPSF3Q9UKF6 RNA5SP465-201ENST00000391195 109 ntBASIC2.07□□□□□ -2.08
CPSF3Q9UKF6 OPRPN-201ENST00000399575 1040 ntAPPRIS P1 TSL 1 (best) BASIC2.07□□□□□ -2.08
CPSF3Q9UKF6 AC019129.1-201ENST00000403786 261 ntBASIC2.07□□□□□ -2.08
CPSF3Q9UKF6 MIR548K-201ENST00000408406 116 ntBASIC2.07□□□□□ -2.08
CPSF3Q9UKF6 MIR548F5-201ENST00000408421 86 ntBASIC2.07□□□□□ -2.08
CPSF3Q9UKF6 RPS26P42-201ENST00000413485 326 ntBASIC2.07□□□□□ -2.08
CPSF3Q9UKF6 AL139396.1-201ENST00000421137 167 ntBASIC2.07□□□□□ -2.08
CPSF3Q9UKF6 AL358453.1-201ENST00000422522 250 ntBASIC2.07□□□□□ -2.08
CPSF3Q9UKF6 AC035139.1-201ENST00000423256 273 ntTSL 3 BASIC2.07□□□□□ -2.08
CPSF3Q9UKF6 AL353743.2-202ENST00000439544 473 ntTSL 3 BASIC2.07□□□□□ -2.08
CPSF3Q9UKF6 AL035634.1-201ENST00000446768 372 ntTSL 2 BASIC2.07□□□□□ -2.08
CPSF3Q9UKF6 AL035415.1-201ENST00000447150 289 ntTSL 5 BASIC2.07□□□□□ -2.08
CPSF3Q9UKF6 AC008154.1-201ENST00000453087 327 ntTSL 3 BASIC2.07□□□□□ -2.08
CPSF3Q9UKF6 AL844175.1-201ENST00000455153 323 ntTSL 5 BASIC2.07□□□□□ -2.08
CPSF3Q9UKF6 AC087477.1-201ENST00000465747 340 ntBASIC2.07□□□□□ -2.08
CPSF3Q9UKF6 FO393415.2-201ENST00000480085 343 ntBASIC2.07□□□□□ -2.08
CPSF3Q9UKF6 AC132942.1-201ENST00000486753 483 ntBASIC2.07□□□□□ -2.08
CPSF3Q9UKF6 LINC01323-201ENST00000486767 576 ntTSL 3 BASIC2.07□□□□□ -2.08
CPSF3Q9UKF6 RPL23AP75-201ENST00000491601 451 ntBASIC2.07□□□□□ -2.08
CPSF3Q9UKF6 ATP5EP1-201ENST00000510257 156 ntBASIC2.07□□□□□ -2.08
CPSF3Q9UKF6 ACA59.1-201ENST00000515966 143 ntBASIC2.07□□□□□ -2.08
CPSF3Q9UKF6 RNA5SP182-201ENST00000516064 82 ntBASIC2.07□□□□□ -2.08
CPSF3Q9UKF6 DEFB131C-201ENST00000528817 165 ntBASIC2.07□□□□□ -2.08
CPSF3Q9UKF6 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC2.07□□□□□ -2.08
CPSF3Q9UKF6 B3GNTL1P2-201ENST00000603673 288 ntBASIC2.07□□□□□ -2.08
CPSF3Q9UKF6 UBE2E2-206ENST00000613545 282 ntTSL 5 BASIC2.07□□□□□ -2.08
CPSF3Q9UKF6 MIR6128-201ENST00000615528 109 ntBASIC2.07□□□□□ -2.08
CPSF3Q9UKF6 C16orf97-206ENST00000622950 415 ntTSL 2 BASIC2.07□□□□□ -2.08
CPSF3Q9UKF6 ASPM-202ENST00000367408 3747 ntTSL 1 (best) BASIC2.07□□□□□ -2.08
CPSF3Q9UKF6 MIPOL1-203ENST00000537471 5954 ntAPPRIS P1 TSL 5 BASIC2.06□□□□□ -2.08
CPSF3Q9UKF6 AL356292.1-201ENST00000283110 373 ntBASIC2.06□□□□□ -2.08
CPSF3Q9UKF6 SNORD115-3-201ENST00000363100 82 ntBASIC2.06□□□□□ -2.08
CPSF3Q9UKF6 Y_RNA.184-201ENST00000363884 108 ntBASIC2.06□□□□□ -2.08
CPSF3Q9UKF6 RNU6-767P-201ENST00000384132 107 ntBASIC2.06□□□□□ -2.08
CPSF3Q9UKF6 SNORD14D-201ENST00000384390 87 ntBASIC2.06□□□□□ -2.08
CPSF3Q9UKF6 MIR487A-201ENST00000385009 80 ntBASIC2.06□□□□□ -2.08
CPSF3Q9UKF6 RNU2-20P-201ENST00000410425 191 ntBASIC2.06□□□□□ -2.08
CPSF3Q9UKF6 EIF4EP2-201ENST00000422816 654 ntBASIC2.06□□□□□ -2.08
CPSF3Q9UKF6 USP9YP30-201ENST00000430729 455 ntBASIC2.06□□□□□ -2.08
CPSF3Q9UKF6 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC2.06□□□□□ -2.08
CPSF3Q9UKF6 PMCHL2-203ENST00000457791 237 ntBASIC2.06□□□□□ -2.08
CPSF3Q9UKF6 AC046134.1-201ENST00000514454 666 ntBASIC2.06□□□□□ -2.08
CPSF3Q9UKF6 RNU6-1098P-201ENST00000516772 96 ntBASIC2.06□□□□□ -2.08
CPSF3Q9UKF6 RNU7-30P-201ENST00000516835 62 ntBASIC2.06□□□□□ -2.08
CPSF3Q9UKF6 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC2.06□□□□□ -2.08
CPSF3Q9UKF6 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC2.06□□□□□ -2.08
CPSF3Q9UKF6 AC090517.1-201ENST00000569307 266 ntBASIC2.06□□□□□ -2.08
CPSF3Q9UKF6 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC2.06□□□□□ -2.08
CPSF3Q9UKF6 AC016727.2-201ENST00000603988 621 ntBASIC2.06□□□□□ -2.08
CPSF3Q9UKF6 DUXAP9-208ENST00000622815 614 ntBASIC2.06□□□□□ -2.08
CPSF3Q9UKF6 MTND4P1-201ENST00000457501 1466 ntBASIC2.06□□□□□ -2.08
CPSF3Q9UKF6 Y_RNA.339-201ENST00000365325 102 ntBASIC2.05□□□□□ -2.08
CPSF3Q9UKF6 MIR549A-201ENST00000385268 96 ntBASIC2.05□□□□□ -2.08
CPSF3Q9UKF6 RPL21P111-201ENST00000418453 477 ntBASIC2.05□□□□□ -2.08
CPSF3Q9UKF6 Z82188.1-201ENST00000436709 154 ntBASIC2.05□□□□□ -2.08
CPSF3Q9UKF6 HMGN2P18-201ENST00000450680 270 ntBASIC2.05□□□□□ -2.08
CPSF3Q9UKF6 RPL31P58-201ENST00000469001 379 ntBASIC2.05□□□□□ -2.08
CPSF3Q9UKF6 AC116337.1-201ENST00000509680 687 ntBASIC2.05□□□□□ -2.08
CPSF3Q9UKF6 RNA5SP490-201ENST00000517141 136 ntBASIC2.05□□□□□ -2.08
CPSF3Q9UKF6 RNU1-54P-201ENST00000517181 120 ntBASIC2.05□□□□□ -2.08
CPSF3Q9UKF6 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC2.05□□□□□ -2.08
CPSF3Q9UKF6 MIR4299-201ENST00000577899 72 ntBASIC2.05□□□□□ -2.08
CPSF3Q9UKF6 AC010928.2-201ENST00000588017 287 ntBASIC2.05□□□□□ -2.08
CPSF3Q9UKF6 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC2.05□□□□□ -2.08
CPSF3Q9UKF6 AL773524.1-201ENST00000614065 229 ntBASIC2.05□□□□□ -2.08
CPSF3Q9UKF6 MESTIT1_1.1-201ENST00000618871 140 ntBASIC2.05□□□□□ -2.08
CPSF3Q9UKF6 SCARNA4-201ENST00000629045 128 ntBASIC2.05□□□□□ -2.08
CPSF3Q9UKF6 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC2.05□□□□□ -2.08
CPSF3Q9UKF6 AC008163.1-205ENST00000413944 4649 ntTSL 1 (best) BASIC2.05□□□□□ -2.08
CPSF3Q9UKF6 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC2.04□□□□□ -2.08
CPSF3Q9UKF6 RNU6-845P-201ENST00000362578 103 ntBASIC2.04□□□□□ -2.08
CPSF3Q9UKF6 RNU1-76P-201ENST00000362903 159 ntBASIC2.04□□□□□ -2.08
CPSF3Q9UKF6 RNU6-1164P-201ENST00000364428 107 ntBASIC2.04□□□□□ -2.08
CPSF3Q9UKF6 RNU6-596P-201ENST00000365395 98 ntBASIC2.04□□□□□ -2.08
CPSF3Q9UKF6 SNORA18.2-201ENST00000383865 132 ntBASIC2.04□□□□□ -2.08
CPSF3Q9UKF6 U8.10-201ENST00000384260 133 ntBASIC2.04□□□□□ -2.08
CPSF3Q9UKF6 RNU6-842P-201ENST00000384269 107 ntBASIC2.04□□□□□ -2.08
CPSF3Q9UKF6 AL357139.1-201ENST00000407792 426 ntBASIC2.04□□□□□ -2.08
CPSF3Q9UKF6 RNU6-174P-201ENST00000410406 106 ntBASIC2.04□□□□□ -2.08
CPSF3Q9UKF6 LINC01853-201ENST00000417715 444 ntTSL 3 BASIC2.04□□□□□ -2.08
CPSF3Q9UKF6 PDCL2P1-201ENST00000419302 352 ntBASIC2.04□□□□□ -2.08
Retrieved 100 of 98,524 protein–RNA pairs in 169.3 ms