Protein–RNA interactions for Protein: Q9NUL7

DDX28, Probable ATP-dependent RNA helicase DDX28, humanhuman

Known RBP Predictions only

Length 540 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX28Q9NUL7 Y_RNA.157-201ENST00000363638 102 ntBASIC1.75□□□□□ -2.13
DDX28Q9NUL7 RNU6ATAC38P-201ENST00000408119 126 ntBASIC1.75□□□□□ -2.13
DDX28Q9NUL7 AC009161.1-201ENST00000417306 376 ntBASIC1.75□□□□□ -2.13
DDX28Q9NUL7 AL513185.2-201ENST00000425543 193 ntBASIC1.75□□□□□ -2.13
DDX28Q9NUL7 PPP1R2P5-201ENST00000457256 603 ntBASIC1.75□□□□□ -2.13
DDX28Q9NUL7 AC016925.1-201ENST00000458303 298 ntBASIC1.75□□□□□ -2.13
DDX28Q9NUL7 RPS29P25-201ENST00000481709 171 ntBASIC1.75□□□□□ -2.13
DDX28Q9NUL7 RNU6-295P-201ENST00000516901 104 ntBASIC1.75□□□□□ -2.13
DDX28Q9NUL7 HSBP1P1-201ENST00000555205 166 ntBASIC1.75□□□□□ -2.13
DDX28Q9NUL7 MIR5089-201ENST00000580047 84 ntBASIC1.75□□□□□ -2.13
DDX28Q9NUL7 AC023043.2-201ENST00000589678 1026 ntBASIC1.75□□□□□ -2.13
DDX28Q9NUL7 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.75□□□□□ -2.13
DDX28Q9NUL7 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC1.75□□□□□ -2.13
DDX28Q9NUL7 AC139792.2-201ENST00000624218 587 ntBASIC1.75□□□□□ -2.13
DDX28Q9NUL7 AC090617.10-201ENST00000624308 134 ntBASIC1.75□□□□□ -2.13
DDX28Q9NUL7 AL356292.1-201ENST00000283110 373 ntBASIC1.74□□□□□ -2.13
DDX28Q9NUL7 CBX3P1-201ENST00000325243 554 ntBASIC1.74□□□□□ -2.13
DDX28Q9NUL7 MIR340-201ENST00000362125 95 ntBASIC1.74□□□□□ -2.13
DDX28Q9NUL7 Y_RNA.212-201ENST00000364177 102 ntBASIC1.74□□□□□ -2.13
DDX28Q9NUL7 RNU4-42P-201ENST00000364738 142 ntBASIC1.74□□□□□ -2.13
DDX28Q9NUL7 SNORA18.2-201ENST00000383865 132 ntBASIC1.74□□□□□ -2.13
DDX28Q9NUL7 SNORD116-11-201ENST00000383882 92 ntBASIC1.74□□□□□ -2.13
DDX28Q9NUL7 SNORA67.3-201ENST00000384366 140 ntBASIC1.74□□□□□ -2.13
DDX28Q9NUL7 RNU6-1026P-201ENST00000384465 108 ntBASIC1.74□□□□□ -2.13
DDX28Q9NUL7 SNORA12.2-201ENST00000391040 156 ntBASIC1.74□□□□□ -2.13
DDX28Q9NUL7 SNORD115-47-201ENST00000391226 86 ntBASIC1.74□□□□□ -2.13
DDX28Q9NUL7 AL590632.1-201ENST00000424289 371 ntBASIC1.74□□□□□ -2.13
DDX28Q9NUL7 AL445646.1-201ENST00000431784 216 ntBASIC1.74□□□□□ -2.13
DDX28Q9NUL7 OR2AQ1P-201ENST00000451972 200 ntBASIC1.74□□□□□ -2.13
DDX28Q9NUL7 AC063944.1-201ENST00000496943 295 ntTSL 3 BASIC1.74□□□□□ -2.13
DDX28Q9NUL7 MTCYBP18-201ENST00000501056 747 ntBASIC1.74□□□□□ -2.13
DDX28Q9NUL7 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC1.74□□□□□ -2.13
DDX28Q9NUL7 AC026470.2-201ENST00000561492 181 ntBASIC1.74□□□□□ -2.13
DDX28Q9NUL7 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC1.74□□□□□ -2.13
DDX28Q9NUL7 Y_RNA.783-201ENST00000613546 102 ntBASIC1.74□□□□□ -2.13
DDX28Q9NUL7 AC005562.2-201ENST00000618264 111 ntBASIC1.74□□□□□ -2.13
DDX28Q9NUL7 TEX15-203ENST00000638951 11341 ntAPPRIS P1 TSL 5 BASIC1.73□□□□□ -2.13
DDX28Q9NUL7 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC1.73□□□□□ -2.13
DDX28Q9NUL7 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.73□□□□□ -2.13
DDX28Q9NUL7 SNORA48.1-201ENST00000390879 135 ntBASIC1.73□□□□□ -2.13
DDX28Q9NUL7 RNU6ATAC15P-201ENST00000408279 121 ntBASIC1.73□□□□□ -2.13
DDX28Q9NUL7 AC139712.2-201ENST00000424302 339 ntBASIC1.73□□□□□ -2.13
DDX28Q9NUL7 UBE2V1P8-201ENST00000437166 265 ntBASIC1.73□□□□□ -2.13
DDX28Q9NUL7 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.73□□□□□ -2.13
DDX28Q9NUL7 DAP3P1-201ENST00000441522 278 ntBASIC1.73□□□□□ -2.13
DDX28Q9NUL7 AC007395.1-201ENST00000451333 677 ntBASIC1.73□□□□□ -2.13
DDX28Q9NUL7 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC1.73□□□□□ -2.13
DDX28Q9NUL7 AC007215.1-201ENST00000464893 276 ntBASIC1.73□□□□□ -2.13
DDX28Q9NUL7 RPL23AP75-201ENST00000491601 451 ntBASIC1.73□□□□□ -2.13
DDX28Q9NUL7 AF186996.7-201ENST00000492781 209 ntBASIC1.73□□□□□ -2.13
DDX28Q9NUL7 MTCO2P30-201ENST00000503662 364 ntBASIC1.73□□□□□ -2.13
DDX28Q9NUL7 RNU6-1314P-201ENST00000517139 104 ntBASIC1.73□□□□□ -2.13
DDX28Q9NUL7 AL035078.1-202ENST00000531627 413 ntTSL 2 BASIC1.73□□□□□ -2.13
DDX28Q9NUL7 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC1.73□□□□□ -2.13
DDX28Q9NUL7 AC024614.2-201ENST00000577584 372 ntBASIC1.73□□□□□ -2.13
DDX28Q9NUL7 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.73□□□□□ -2.13
DDX28Q9NUL7 POLR3GP2-201ENST00000588366 668 ntBASIC1.73□□□□□ -2.13
DDX28Q9NUL7 AC005786.1-201ENST00000588553 154 ntBASIC1.73□□□□□ -2.13
DDX28Q9NUL7 AC016727.2-201ENST00000603988 621 ntBASIC1.73□□□□□ -2.13
DDX28Q9NUL7 TCL6_2.1-201ENST00000615162 119 ntBASIC1.73□□□□□ -2.13
DDX28Q9NUL7 MIR3662-201ENST00000637030 95 ntBASIC1.73□□□□□ -2.13
DDX28Q9NUL7 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC1.73□□□□□ -2.13
DDX28Q9NUL7 AC073869.6-201ENST00000640656 341 ntBASIC1.73□□□□□ -2.13
DDX28Q9NUL7 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.73□□□□□ -2.13
DDX28Q9NUL7 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC1.72□□□□□ -2.13
DDX28Q9NUL7 SNORD50.1-201ENST00000362987 71 ntBASIC1.72□□□□□ -2.13
DDX28Q9NUL7 Y_RNA.132-201ENST00000363421 102 ntBASIC1.72□□□□□ -2.13
DDX28Q9NUL7 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC1.72□□□□□ -2.13
DDX28Q9NUL7 MIR300-201ENST00000401138 83 ntBASIC1.72□□□□□ -2.13
DDX28Q9NUL7 MIR548F1-201ENST00000408667 84 ntBASIC1.72□□□□□ -2.13
DDX28Q9NUL7 RNU2-2P-201ENST00000410396 191 ntBASIC1.72□□□□□ -2.13
DDX28Q9NUL7 RNA5SP57-201ENST00000459463 123 ntBASIC1.72□□□□□ -2.13
DDX28Q9NUL7 AC130509.1-201ENST00000464158 433 ntBASIC1.72□□□□□ -2.13
DDX28Q9NUL7 AC087477.1-201ENST00000465747 340 ntBASIC1.72□□□□□ -2.13
DDX28Q9NUL7 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC1.72□□□□□ -2.13
DDX28Q9NUL7 RNU6-864P-201ENST00000516256 108 ntBASIC1.72□□□□□ -2.13
DDX28Q9NUL7 Y_RNA.676-201ENST00000516393 96 ntBASIC1.72□□□□□ -2.13
DDX28Q9NUL7 DEFB131C-201ENST00000528817 165 ntBASIC1.72□□□□□ -2.13
DDX28Q9NUL7 AC011494.1-201ENST00000596454 237 ntBASIC1.72□□□□□ -2.13
DDX28Q9NUL7 SNRPGP19-201ENST00000603826 189 ntBASIC1.72□□□□□ -2.13
DDX28Q9NUL7 AP000907.4-201ENST00000604143 237 ntBASIC1.72□□□□□ -2.13
DDX28Q9NUL7 AC019193.3-201ENST00000609144 554 ntBASIC1.72□□□□□ -2.13
DDX28Q9NUL7 U2.15-201ENST00000611544 191 ntBASIC1.72□□□□□ -2.13
DDX28Q9NUL7 U2.16-201ENST00000613119 191 ntBASIC1.72□□□□□ -2.13
DDX28Q9NUL7 U2.12-201ENST00000613778 191 ntBASIC1.72□□□□□ -2.13
DDX28Q9NUL7 U2.20-201ENST00000613956 192 ntBASIC1.72□□□□□ -2.13
DDX28Q9NUL7 U2.9-201ENST00000615427 191 ntBASIC1.72□□□□□ -2.13
DDX28Q9NUL7 U2.11-201ENST00000616345 191 ntBASIC1.72□□□□□ -2.13
DDX28Q9NUL7 U2.2-201ENST00000616535 191 ntBASIC1.72□□□□□ -2.13
DDX28Q9NUL7 U2.3-201ENST00000617785 191 ntBASIC1.72□□□□□ -2.13
DDX28Q9NUL7 U2.19-201ENST00000618602 191 ntBASIC1.72□□□□□ -2.13
DDX28Q9NUL7 RNU2-1-201ENST00000618664 191 ntBASIC1.72□□□□□ -2.13
DDX28Q9NUL7 U2.6-201ENST00000619225 191 ntBASIC1.72□□□□□ -2.13
DDX28Q9NUL7 U2.5-201ENST00000619465 191 ntBASIC1.72□□□□□ -2.13
DDX28Q9NUL7 U2.10-201ENST00000620268 191 ntBASIC1.72□□□□□ -2.13
DDX28Q9NUL7 AL359697.1-201ENST00000624879 587 ntBASIC1.72□□□□□ -2.13
DDX28Q9NUL7 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.72□□□□□ -2.13
DDX28Q9NUL7 AC100810.6-201ENST00000638068 285 ntBASIC1.72□□□□□ -2.13
DDX28Q9NUL7 RNU6-1013P-201ENST00000384180 107 ntBASIC1.71□□□□□ -2.14
DDX28Q9NUL7 MIR583-201ENST00000384846 75 ntBASIC1.71□□□□□ -2.14
Retrieved 100 of 98,524 protein–RNA pairs in 152.9 ms