Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 Y_RNA.404-201ENST00000383978 102 ntBASIC1.89□□□□□ -2.11
CCDC28BQ9BUN5 SNORA36A-201ENST00000384221 132 ntBASIC1.89□□□□□ -2.11
CCDC28BQ9BUN5 Y_RNA.533-201ENST00000384596 114 ntBASIC1.89□□□□□ -2.11
CCDC28BQ9BUN5 RNY4P36-201ENST00000391116 96 ntBASIC1.89□□□□□ -2.11
CCDC28BQ9BUN5 RPL31P63-201ENST00000422565 375 ntBASIC1.89□□□□□ -2.11
CCDC28BQ9BUN5 AL356010.2-201ENST00000422844 197 ntTSL 3 BASIC1.89□□□□□ -2.11
CCDC28BQ9BUN5 AC091133.1-201ENST00000435491 483 ntTSL 3 BASIC1.89□□□□□ -2.11
CCDC28BQ9BUN5 OR2AQ1P-201ENST00000451972 200 ntBASIC1.89□□□□□ -2.11
CCDC28BQ9BUN5 ELOCP24-201ENST00000456370 334 ntBASIC1.89□□□□□ -2.11
CCDC28BQ9BUN5 RNU7-152P-201ENST00000458982 64 ntBASIC1.89□□□□□ -2.11
CCDC28BQ9BUN5 Y_RNA.653-201ENST00000459091 95 ntBASIC1.89□□□□□ -2.11
CCDC28BQ9BUN5 SNORD19B-201ENST00000459623 84 ntBASIC1.89□□□□□ -2.11
CCDC28BQ9BUN5 FO393415.2-201ENST00000480085 343 ntBASIC1.89□□□□□ -2.11
CCDC28BQ9BUN5 RPL7P42-201ENST00000481005 679 ntBASIC1.89□□□□□ -2.11
CCDC28BQ9BUN5 RPL30P10-201ENST00000488148 337 ntBASIC1.89□□□□□ -2.11
CCDC28BQ9BUN5 AC068781.1-201ENST00000488231 618 ntBASIC1.89□□□□□ -2.11
CCDC28BQ9BUN5 AC145146.1-201ENST00000496370 254 ntBASIC1.89□□□□□ -2.11
CCDC28BQ9BUN5 LINC02064-201ENST00000506492 470 ntTSL 5 BASIC1.89□□□□□ -2.11
CCDC28BQ9BUN5 AC097473.1-201ENST00000508142 408 ntBASIC1.89□□□□□ -2.11
CCDC28BQ9BUN5 Y_RNA.718-201ENST00000517110 102 ntBASIC1.89□□□□□ -2.11
CCDC28BQ9BUN5 AC024614.2-201ENST00000577584 372 ntBASIC1.89□□□□□ -2.11
CCDC28BQ9BUN5 MIR3200-201ENST00000580767 85 ntBASIC1.89□□□□□ -2.11
CCDC28BQ9BUN5 AC078899.2-201ENST00000595282 212 ntBASIC1.89□□□□□ -2.11
CCDC28BQ9BUN5 RMST_6.1-201ENST00000611980 203 ntBASIC1.89□□□□□ -2.11
CCDC28BQ9BUN5 PCGEM1.1-201ENST00000613431 131 ntBASIC1.89□□□□□ -2.11
CCDC28BQ9BUN5 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC1.89□□□□□ -2.11
CCDC28BQ9BUN5 AC090517.3-201ENST00000625170 141 ntBASIC1.89□□□□□ -2.11
CCDC28BQ9BUN5 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC1.88□□□□□ -2.11
CCDC28BQ9BUN5 RNU4-79P-201ENST00000362764 141 ntBASIC1.88□□□□□ -2.11
CCDC28BQ9BUN5 RNU6-797P-201ENST00000363101 109 ntBASIC1.88□□□□□ -2.11
CCDC28BQ9BUN5 Y_RNA.259-201ENST00000364619 101 ntBASIC1.88□□□□□ -2.11
CCDC28BQ9BUN5 Y_RNA.473-201ENST00000384333 102 ntBASIC1.88□□□□□ -2.11
CCDC28BQ9BUN5 SNORD116-29-201ENST00000384516 83 ntBASIC1.88□□□□□ -2.11
CCDC28BQ9BUN5 RNU6-1274P-201ENST00000384557 107 ntBASIC1.88□□□□□ -2.11
CCDC28BQ9BUN5 RNU6-310P-201ENST00000384655 107 ntBASIC1.88□□□□□ -2.11
CCDC28BQ9BUN5 MIR561-201ENST00000385216 97 ntBASIC1.88□□□□□ -2.11
CCDC28BQ9BUN5 SNORA75.6-201ENST00000391318 127 ntBASIC1.88□□□□□ -2.11
CCDC28BQ9BUN5 RNA5SP270-201ENST00000411361 118 ntBASIC1.88□□□□□ -2.11
CCDC28BQ9BUN5 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC1.88□□□□□ -2.11
CCDC28BQ9BUN5 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC1.88□□□□□ -2.11
CCDC28BQ9BUN5 AC073325.1-201ENST00000443714 542 ntTSL 4 BASIC1.88□□□□□ -2.11
CCDC28BQ9BUN5 AC087477.1-201ENST00000465747 340 ntBASIC1.88□□□□□ -2.11
CCDC28BQ9BUN5 AF186996.7-201ENST00000492781 209 ntBASIC1.88□□□□□ -2.11
CCDC28BQ9BUN5 Y_RNA.675-201ENST00000516389 149 ntBASIC1.88□□□□□ -2.11
CCDC28BQ9BUN5 AC069133.1-201ENST00000522857 566 ntTSL 4 BASIC1.88□□□□□ -2.11
CCDC28BQ9BUN5 AP000889.1-201ENST00000530968 660 ntBASIC1.88□□□□□ -2.11
CCDC28BQ9BUN5 AL590705.4-201ENST00000532209 134 ntBASIC1.88□□□□□ -2.11
CCDC28BQ9BUN5 CBX3P8-201ENST00000532412 525 ntBASIC1.88□□□□□ -2.11
CCDC28BQ9BUN5 AC093027.1-201ENST00000546698 429 ntBASIC1.88□□□□□ -2.11
CCDC28BQ9BUN5 EIF4A1P12-201ENST00000551910 141 ntBASIC1.88□□□□□ -2.11
CCDC28BQ9BUN5 LINC01570-201ENST00000561572 434 ntTSL 3 BASIC1.88□□□□□ -2.11
CCDC28BQ9BUN5 AC104581.2-201ENST00000572227 430 ntBASIC1.88□□□□□ -2.11
CCDC28BQ9BUN5 MIR5701-3-201ENST00000578890 82 ntBASIC1.88□□□□□ -2.11
CCDC28BQ9BUN5 AC015818.4-201ENST00000580931 353 ntTSL 5 BASIC1.88□□□□□ -2.11
CCDC28BQ9BUN5 MIR4795-201ENST00000584182 89 ntBASIC1.88□□□□□ -2.11
CCDC28BQ9BUN5 MIR5701-1-201ENST00000585138 82 ntBASIC1.88□□□□□ -2.11
CCDC28BQ9BUN5 AL158827.2-201ENST00000602494 330 ntBASIC1.88□□□□□ -2.11
CCDC28BQ9BUN5 B3GNTL1P2-201ENST00000603673 288 ntBASIC1.88□□□□□ -2.11
CCDC28BQ9BUN5 AL355297.2-201ENST00000604792 129 ntBASIC1.88□□□□□ -2.11
CCDC28BQ9BUN5 RPL17P51-201ENST00000605218 238 ntBASIC1.88□□□□□ -2.11
CCDC28BQ9BUN5 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC1.88□□□□□ -2.11
CCDC28BQ9BUN5 Y_RNA.783-201ENST00000613546 102 ntBASIC1.88□□□□□ -2.11
CCDC28BQ9BUN5 MIR5701-2-201ENST00000615634 82 ntBASIC1.88□□□□□ -2.11
CCDC28BQ9BUN5 MIR6873-201ENST00000622788 63 ntBASIC1.88□□□□□ -2.11
CCDC28BQ9BUN5 AL691447.3-201ENST00000635020 330 ntBASIC1.88□□□□□ -2.11
CCDC28BQ9BUN5 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
CCDC28BQ9BUN5 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC1.87□□□□□ -2.11
CCDC28BQ9BUN5 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC1.87□□□□□ -2.11
CCDC28BQ9BUN5 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC1.87□□□□□ -2.11
CCDC28BQ9BUN5 Y_RNA.61-201ENST00000362835 102 ntBASIC1.87□□□□□ -2.11
CCDC28BQ9BUN5 Y_RNA.67-201ENST00000362870 100 ntBASIC1.87□□□□□ -2.11
CCDC28BQ9BUN5 RNU6-137P-201ENST00000363680 108 ntBASIC1.87□□□□□ -2.11
CCDC28BQ9BUN5 U3.9-201ENST00000363823 204 ntBASIC1.87□□□□□ -2.11
CCDC28BQ9BUN5 SNORD32B-201ENST00000364460 84 ntBASIC1.87□□□□□ -2.11
CCDC28BQ9BUN5 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.87□□□□□ -2.11
CCDC28BQ9BUN5 RNU6-1032P-201ENST00000384100 107 ntBASIC1.87□□□□□ -2.11
CCDC28BQ9BUN5 Y_RNA.509-201ENST00000384506 99 ntBASIC1.87□□□□□ -2.11
CCDC28BQ9BUN5 RNU4-53P-201ENST00000410828 140 ntBASIC1.87□□□□□ -2.11
CCDC28BQ9BUN5 Y_RNA.646-201ENST00000410980 101 ntBASIC1.87□□□□□ -2.11
CCDC28BQ9BUN5 Z92545.1-201ENST00000411782 234 ntBASIC1.87□□□□□ -2.11
CCDC28BQ9BUN5 snoU13.30-201ENST00000458951 104 ntBASIC1.87□□□□□ -2.11
CCDC28BQ9BUN5 AC132942.1-201ENST00000486753 483 ntBASIC1.87□□□□□ -2.11
CCDC28BQ9BUN5 RNA5SP384-201ENST00000516615 116 ntBASIC1.87□□□□□ -2.11
CCDC28BQ9BUN5 RNU6-1198P-201ENST00000516904 67 ntBASIC1.87□□□□□ -2.11
CCDC28BQ9BUN5 AC126177.8-201ENST00000618339 1015 ntBASIC1.87□□□□□ -2.11
CCDC28BQ9BUN5 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC1.87□□□□□ -2.11
CCDC28BQ9BUN5 KBTBD3-207ENST00000534815 3396 ntTSL 5 BASIC1.87□□□□□ -2.11
CCDC28BQ9BUN5 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
CCDC28BQ9BUN5 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.86□□□□□ -2.11
CCDC28BQ9BUN5 Y_RNA.431-201ENST00000384086 102 ntBASIC1.86□□□□□ -2.11
CCDC28BQ9BUN5 RNU6-378P-201ENST00000384324 107 ntBASIC1.86□□□□□ -2.11
CCDC28BQ9BUN5 RNU1-148P-201ENST00000384472 162 ntBASIC1.86□□□□□ -2.11
CCDC28BQ9BUN5 MIR208B-201ENST00000401172 77 ntBASIC1.86□□□□□ -2.11
CCDC28BQ9BUN5 Y_RNA.597-201ENST00000410463 100 ntBASIC1.86□□□□□ -2.11
CCDC28BQ9BUN5 RPS20P15-201ENST00000412792 311 ntBASIC1.86□□□□□ -2.11
CCDC28BQ9BUN5 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC1.86□□□□□ -2.11
CCDC28BQ9BUN5 AC007215.1-201ENST00000464893 276 ntBASIC1.86□□□□□ -2.11
CCDC28BQ9BUN5 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC1.86□□□□□ -2.11
CCDC28BQ9BUN5 AC093303.1-201ENST00000514549 295 ntBASIC1.86□□□□□ -2.11
CCDC28BQ9BUN5 RNU7-175P-201ENST00000515915 61 ntBASIC1.86□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 104 ms