Protein–RNA interactions for Protein: Q99536

VAT1, Synaptic vesicle membrane protein VAT-1 homolog, humanhuman

Predictions only

Length 393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VAT1Q99536 RNU11-5P-201ENST00000391216 129 ntBASIC0.85□□□□□ -2.27
VAT1Q99536 HMGN2P34-201ENST00000437647 269 ntBASIC0.85□□□□□ -2.27
VAT1Q99536 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC0.85□□□□□ -2.27
VAT1Q99536 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC0.85□□□□□ -2.27
VAT1Q99536 AL033528.1-201ENST00000453780 140 ntBASIC0.85□□□□□ -2.27
VAT1Q99536 RNU7-34P-201ENST00000459394 64 ntBASIC0.85□□□□□ -2.27
VAT1Q99536 RNU6-1129P-201ENST00000515964 104 ntBASIC0.85□□□□□ -2.27
VAT1Q99536 RNU6-948P-201ENST00000516374 107 ntBASIC0.85□□□□□ -2.27
VAT1Q99536 AC069113.1-201ENST00000517763 267 ntBASIC0.85□□□□□ -2.27
VAT1Q99536 CYCSP23-201ENST00000519781 313 ntBASIC0.85□□□□□ -2.27
VAT1Q99536 RNU6-85P-201ENST00000605989 107 ntBASIC0.85□□□□□ -2.27
VAT1Q99536 AC009509.4-201ENST00000619202 509 ntBASIC0.85□□□□□ -2.27
VAT1Q99536 MPP6-209ENST00000625307 126 ntTSL 5 BASIC0.85□□□□□ -2.27
VAT1Q99536 FABP12-201ENST00000360464 551 ntAPPRIS P1 TSL 1 (best) BASIC0.84□□□□□ -2.27
VAT1Q99536 RNU6-1123P-201ENST00000362347 106 ntBASIC0.84□□□□□ -2.27
VAT1Q99536 RNU6-282P-201ENST00000365357 103 ntBASIC0.84□□□□□ -2.27
VAT1Q99536 RNU6-1235P-201ENST00000384559 107 ntBASIC0.84□□□□□ -2.27
VAT1Q99536 AL031577.2-201ENST00000404133 280 ntBASIC0.84□□□□□ -2.27
VAT1Q99536 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC0.84□□□□□ -2.27
VAT1Q99536 RNU6-498P-201ENST00000459468 107 ntBASIC0.84□□□□□ -2.27
VAT1Q99536 RNU6-165P-201ENST00000517170 99 ntBASIC0.84□□□□□ -2.27
VAT1Q99536 SUMO2P16-201ENST00000519475 264 ntBASIC0.84□□□□□ -2.27
VAT1Q99536 RNU6-323P-201ENST00000521915 107 ntBASIC0.84□□□□□ -2.27
VAT1Q99536 AC096558.1-203ENST00000550516 574 ntTSL 3 BASIC0.84□□□□□ -2.27
VAT1Q99536 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.84□□□□□ -2.27
VAT1Q99536 TPRKBP2-201ENST00000565969 475 ntBASIC0.84□□□□□ -2.27
VAT1Q99536 AC005304.3-201ENST00000581533 511 ntTSL 3 BASIC0.84□□□□□ -2.27
VAT1Q99536 BNIP3P10-201ENST00000605360 577 ntBASIC0.84□□□□□ -2.27
VAT1Q99536 AC104458.1-201ENST00000608243 463 ntBASIC0.84□□□□□ -2.27
VAT1Q99536 AC005562.2-201ENST00000618264 111 ntBASIC0.84□□□□□ -2.27
VAT1Q99536 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.84□□□□□ -2.27
VAT1Q99536 AC009541.1-201ENST00000438279 2662 ntBASIC0.83□□□□□ -2.28
VAT1Q99536 MT-ND2-201ENST00000361453 1042 ntAPPRIS P1 BASIC0.83□□□□□ -2.28
VAT1Q99536 SNORA29-201ENST00000384183 140 ntBASIC0.83□□□□□ -2.28
VAT1Q99536 RNU6-975P-201ENST00000384296 105 ntBASIC0.83□□□□□ -2.28
VAT1Q99536 RNU6-456P-201ENST00000384493 107 ntBASIC0.83□□□□□ -2.28
VAT1Q99536 RNU6-297P-201ENST00000384636 107 ntBASIC0.83□□□□□ -2.28
VAT1Q99536 RNA5SP109-201ENST00000391010 116 ntBASIC0.83□□□□□ -2.28
VAT1Q99536 RPL21P1-201ENST00000399532 476 ntBASIC0.83□□□□□ -2.28
VAT1Q99536 AL589987.2-201ENST00000417426 582 ntTSL 2 BASIC0.83□□□□□ -2.28
VAT1Q99536 AC009299.3-201ENST00000421122 1072 ntTSL 3 BASIC0.83□□□□□ -2.28
VAT1Q99536 AC004386.2-201ENST00000441858 148 ntBASIC0.83□□□□□ -2.28
VAT1Q99536 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC0.83□□□□□ -2.28
VAT1Q99536 RNU7-167P-201ENST00000459160 62 ntBASIC0.83□□□□□ -2.28
VAT1Q99536 LINC02064-202ENST00000507876 403 ntTSL 5 BASIC0.83□□□□□ -2.28
VAT1Q99536 UBL5P1-201ENST00000507979 193 ntBASIC0.83□□□□□ -2.28
VAT1Q99536 LINC01491-201ENST00000558434 505 ntTSL 3 BASIC0.83□□□□□ -2.28
VAT1Q99536 MIR3941-201ENST00000582572 103 ntBASIC0.83□□□□□ -2.28
VAT1Q99536 AC245014.2-201ENST00000603689 287 ntBASIC0.83□□□□□ -2.28
VAT1Q99536 AC246785.4-201ENST00000605374 287 ntBASIC0.83□□□□□ -2.28
VAT1Q99536 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC0.83□□□□□ -2.28
VAT1Q99536 Y_RNA.287-201ENST00000364853 94 ntBASIC0.82□□□□□ -2.28
VAT1Q99536 RNU6-417P-201ENST00000384712 107 ntBASIC0.82□□□□□ -2.28
VAT1Q99536 BX295541.1-201ENST00000417774 250 ntBASIC0.82□□□□□ -2.28
VAT1Q99536 CYCSP46-201ENST00000423569 204 ntBASIC0.82□□□□□ -2.28
VAT1Q99536 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.82□□□□□ -2.28
VAT1Q99536 MTCO2P3-201ENST00000442543 421 ntBASIC0.82□□□□□ -2.28
VAT1Q99536 AC022364.2-201ENST00000457963 554 ntBASIC0.82□□□□□ -2.28
VAT1Q99536 RNU7-125P-201ENST00000458760 62 ntBASIC0.82□□□□□ -2.28
VAT1Q99536 RPL39P5-202ENST00000512505 151 ntBASIC0.82□□□□□ -2.28
VAT1Q99536 AL929325.1-201ENST00000603096 117 ntBASIC0.82□□□□□ -2.28
VAT1Q99536 AC013244.2-201ENST00000603396 103 ntBASIC0.82□□□□□ -2.28
VAT1Q99536 AC016727.2-201ENST00000603988 621 ntBASIC0.82□□□□□ -2.28
VAT1Q99536 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC0.82□□□□□ -2.28
VAT1Q99536 AL020996.3-201ENST00000606617 222 ntBASIC0.82□□□□□ -2.28
VAT1Q99536 AC021506.2-201ENST00000612354 169 ntBASIC0.82□□□□□ -2.28
VAT1Q99536 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC0.82□□□□□ -2.28
VAT1Q99536 CCDC14-221ENST00000489746 6476 ntAPPRIS ALT2 TSL 1 (best) BASIC0.82□□□□□ -2.28
VAT1Q99536 TEX15-201ENST00000256246 10110 ntTSL 1 (best) BASIC0.81□□□□□ -2.28
VAT1Q99536 RNU6-606P-201ENST00000384721 111 ntBASIC0.81□□□□□ -2.28
VAT1Q99536 MIR515-2-201ENST00000384883 83 ntBASIC0.81□□□□□ -2.28
VAT1Q99536 MIR515-1-201ENST00000384884 83 ntBASIC0.81□□□□□ -2.28
VAT1Q99536 RNA5SP467-201ENST00000391274 118 ntBASIC0.81□□□□□ -2.28
VAT1Q99536 RNU2-29P-201ENST00000410423 189 ntBASIC0.81□□□□□ -2.28
VAT1Q99536 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC0.81□□□□□ -2.28
VAT1Q99536 HSPE1P13-201ENST00000451143 297 ntBASIC0.81□□□□□ -2.28
VAT1Q99536 AL589678.1-201ENST00000452685 561 ntTSL 3 BASIC0.81□□□□□ -2.28
VAT1Q99536 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC0.81□□□□□ -2.28
VAT1Q99536 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC0.81□□□□□ -2.28
VAT1Q99536 AC105417.1-201ENST00000514691 285 ntBASIC0.81□□□□□ -2.28
VAT1Q99536 SNORA18.6-201ENST00000516792 115 ntBASIC0.81□□□□□ -2.28
VAT1Q99536 AC100807.1-201ENST00000517640 552 ntTSL 5 BASIC0.81□□□□□ -2.28
VAT1Q99536 CBX3P8-201ENST00000532412 525 ntBASIC0.81□□□□□ -2.28
VAT1Q99536 AC016256.1-201ENST00000547971 354 ntBASIC0.81□□□□□ -2.28
VAT1Q99536 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC0.81□□□□□ -2.28
VAT1Q99536 MIR3973-201ENST00000579824 107 ntBASIC0.81□□□□□ -2.28
VAT1Q99536 MIR5006-201ENST00000583027 110 ntBASIC0.81□□□□□ -2.28
VAT1Q99536 BNIP3P39-201ENST00000601077 554 ntBASIC0.81□□□□□ -2.28
VAT1Q99536 AL391646.1-201ENST00000603860 190 ntBASIC0.81□□□□□ -2.28
VAT1Q99536 TCL6_2.1-201ENST00000615162 119 ntBASIC0.81□□□□□ -2.28
VAT1Q99536 AC022960.3-201ENST00000619794 441 ntBASIC0.81□□□□□ -2.28
VAT1Q99536 AC009161.2-201ENST00000624626 138 ntBASIC0.81□□□□□ -2.28
VAT1Q99536 MIR373-201ENST00000362273 69 ntBASIC0.8□□□□□ -2.28
VAT1Q99536 MIR337-201ENST00000362281 93 ntBASIC0.8□□□□□ -2.28
VAT1Q99536 RNA5SP432-201ENST00000362480 116 ntBASIC0.8□□□□□ -2.28
VAT1Q99536 RNU6-181P-201ENST00000363225 107 ntBASIC0.8□□□□□ -2.28
VAT1Q99536 RNU6-553P-201ENST00000364047 96 ntBASIC0.8□□□□□ -2.28
VAT1Q99536 MIR549A-201ENST00000385268 96 ntBASIC0.8□□□□□ -2.28
VAT1Q99536 FGFR1OP2P1-201ENST00000395943 500 ntBASIC0.8□□□□□ -2.28
VAT1Q99536 AC010099.3-201ENST00000423896 409 ntBASIC0.8□□□□□ -2.28
Retrieved 100 of 98,524 protein–RNA pairs in 115.6 ms