Protein–RNA interactions for Protein: Q96EP1

CHFR, E3 ubiquitin-protein ligase CHFR, humanhuman

Predictions only

Length 664 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHFRQ96EP1 Y_RNA.127-201ENST00000363386 109 ntBASIC3.19□□□□□ -1.9
CHFRQ96EP1 RNU4-84P-201ENST00000364200 139 ntBASIC3.19□□□□□ -1.9
CHFRQ96EP1 Y_RNA.262-201ENST00000364641 102 ntBASIC3.19□□□□□ -1.9
CHFRQ96EP1 RNU6-336P-201ENST00000364891 107 ntBASIC3.19□□□□□ -1.9
CHFRQ96EP1 RNU6-1325P-201ENST00000364905 105 ntBASIC3.19□□□□□ -1.9
CHFRQ96EP1 RNU4-9P-201ENST00000364951 139 ntBASIC3.19□□□□□ -1.9
CHFRQ96EP1 SNORD67-201ENST00000390833 111 ntBASIC3.19□□□□□ -1.9
CHFRQ96EP1 RNU6-1197P-201ENST00000391183 107 ntBASIC3.19□□□□□ -1.9
CHFRQ96EP1 AC024067.1-201ENST00000426199 223 ntBASIC3.19□□□□□ -1.9
CHFRQ96EP1 MAGEA8-AS1-201ENST00000427671 476 ntTSL 3 BASIC3.19□□□□□ -1.9
CHFRQ96EP1 AL360169.1-201ENST00000435116 143 ntTSL 5 BASIC3.19□□□□□ -1.9
CHFRQ96EP1 AC009296.1-201ENST00000443146 155 ntBASIC3.19□□□□□ -1.9
CHFRQ96EP1 AC125238.1-201ENST00000448842 249 ntBASIC3.19□□□□□ -1.9
CHFRQ96EP1 AP000870.1-201ENST00000472927 406 ntBASIC3.19□□□□□ -1.9
CHFRQ96EP1 RPL23AP75-201ENST00000491601 451 ntBASIC3.19□□□□□ -1.9
CHFRQ96EP1 HMGB3P3-201ENST00000510526 400 ntBASIC3.19□□□□□ -1.9
CHFRQ96EP1 RAC1P5-201ENST00000512182 576 ntBASIC3.19□□□□□ -1.9
CHFRQ96EP1 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC3.19□□□□□ -1.9
CHFRQ96EP1 AC090138.1-201ENST00000524493 578 ntTSL 4 BASIC3.19□□□□□ -1.9
CHFRQ96EP1 AP001001.1-201ENST00000532422 826 ntTSL 3 BASIC3.19□□□□□ -1.9
CHFRQ96EP1 AC112693.2-201ENST00000556538 232 ntBASIC3.19□□□□□ -1.9
CHFRQ96EP1 AC024270.4-201ENST00000570202 421 ntTSL 3 BASIC3.19□□□□□ -1.9
CHFRQ96EP1 MIR5692C2-201ENST00000577959 77 ntBASIC3.19□□□□□ -1.9
CHFRQ96EP1 MIR4782-201ENST00000577987 79 ntBASIC3.19□□□□□ -1.9
CHFRQ96EP1 AC006023.1-201ENST00000603944 259 ntBASIC3.19□□□□□ -1.9
CHFRQ96EP1 AC068544.1-201ENST00000635064 248 ntTSL 5 BASIC3.19□□□□□ -1.9
CHFRQ96EP1 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC3.19□□□□□ -1.9
CHFRQ96EP1 ACTR6-212ENST00000552376 1659 ntTSL 5 BASIC3.19□□□□□ -1.9
CHFRQ96EP1 OR4G2P-202ENST00000641004 1759 ntBASIC3.19□□□□□ -1.9
CHFRQ96EP1 RFESD-202ENST00000380005 2587 ntTSL 2 BASIC3.19□□□□□ -1.9
CHFRQ96EP1 AC093725.1-201ENST00000508135 2672 ntTSL 5 BASIC3.19□□□□□ -1.9
CHFRQ96EP1 OR51L1-203ENST00000641819 7300 ntAPPRIS P1 BASIC3.19□□□□□ -1.9
CHFRQ96EP1 MYOT-201ENST00000239926 2337 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CHFRQ96EP1 AC233981.2-201ENST00000611524 1614 ntBASIC3.19□□□□□ -1.9
CHFRQ96EP1 MGAT4C-211ENST00000621808 2582 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CHFRQ96EP1 AL391516.1-201ENST00000554380 2449 ntBASIC3.18□□□□□ -1.9
CHFRQ96EP1 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CHFRQ96EP1 RNU6-1167P-201ENST00000363227 94 ntBASIC3.18□□□□□ -1.9
CHFRQ96EP1 RNU6-626P-201ENST00000363354 107 ntBASIC3.18□□□□□ -1.9
CHFRQ96EP1 RNU6-961P-201ENST00000363893 105 ntBASIC3.18□□□□□ -1.9
CHFRQ96EP1 RNU4-56P-201ENST00000364700 142 ntBASIC3.18□□□□□ -1.9
CHFRQ96EP1 Y_RNA.412-201ENST00000384001 104 ntBASIC3.18□□□□□ -1.9
CHFRQ96EP1 RNU6-20P-201ENST00000384106 107 ntBASIC3.18□□□□□ -1.9
CHFRQ96EP1 RNU6-843P-201ENST00000384454 104 ntBASIC3.18□□□□□ -1.9
CHFRQ96EP1 SNORD15B-201ENST00000384714 146 ntBASIC3.18□□□□□ -1.9
CHFRQ96EP1 AL513331.1-201ENST00000411908 397 ntBASIC3.18□□□□□ -1.9
CHFRQ96EP1 AC010731.3-201ENST00000415029 566 ntTSL 4 BASIC3.18□□□□□ -1.9
CHFRQ96EP1 AL512844.2-201ENST00000433990 593 ntBASIC3.18□□□□□ -1.9
CHFRQ96EP1 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC3.18□□□□□ -1.9
CHFRQ96EP1 Z96811.1-201ENST00000445880 108 ntBASIC3.18□□□□□ -1.9
CHFRQ96EP1 AC010974.1-201ENST00000450509 374 ntTSL 3 BASIC3.18□□□□□ -1.9
CHFRQ96EP1 RNU6-1333P-201ENST00000516162 93 ntBASIC3.18□□□□□ -1.9
CHFRQ96EP1 RNU6-567P-201ENST00000516746 107 ntBASIC3.18□□□□□ -1.9
CHFRQ96EP1 RNU6-971P-201ENST00000516920 106 ntBASIC3.18□□□□□ -1.9
CHFRQ96EP1 RNU6-143P-201ENST00000516942 93 ntBASIC3.18□□□□□ -1.9
CHFRQ96EP1 RNU6-56P-201ENST00000516986 93 ntBASIC3.18□□□□□ -1.9
CHFRQ96EP1 RNA5SP380-201ENST00000517190 98 ntBASIC3.18□□□□□ -1.9
CHFRQ96EP1 SUMO2P18-201ENST00000518873 252 ntBASIC3.18□□□□□ -1.9
CHFRQ96EP1 UTP23-205ENST00000520733 369 ntTSL 3 BASIC3.18□□□□□ -1.9
CHFRQ96EP1 AP005660.1-201ENST00000522972 293 ntBASIC3.18□□□□□ -1.9
CHFRQ96EP1 AC215217.1-201ENST00000562162 347 ntTSL 3 BASIC3.18□□□□□ -1.9
CHFRQ96EP1 DISC1FP1-204ENST00000563681 466 ntTSL 3 BASIC3.18□□□□□ -1.9
CHFRQ96EP1 LINC01195-201ENST00000570118 451 ntTSL 3 BASIC3.18□□□□□ -1.9
CHFRQ96EP1 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC3.18□□□□□ -1.9
CHFRQ96EP1 Y_RNA.778-201ENST00000620203 90 ntBASIC3.18□□□□□ -1.9
CHFRQ96EP1 SCARNA4-201ENST00000629045 128 ntBASIC3.18□□□□□ -1.9
CHFRQ96EP1 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC3.18□□□□□ -1.9
CHFRQ96EP1 IL33-201ENST00000381434 2641 ntAPPRIS P1 TSL 1 (best) BASIC3.18□□□□□ -1.9
CHFRQ96EP1 FILIP1L-206ENST00000471562 2854 ntTSL 1 (best) BASIC3.18□□□□□ -1.9
CHFRQ96EP1 EYS-204ENST00000370621 10485 ntAPPRIS ALT2 TSL 1 (best) BASIC3.17□□□□□ -1.9
CHFRQ96EP1 AC131280.1-202ENST00000624067 4211 ntBASIC3.17□□□□□ -1.9
CHFRQ96EP1 Y_RNA.71-201ENST00000362892 104 ntBASIC3.17□□□□□ -1.9
CHFRQ96EP1 RNU6-151P-201ENST00000364158 107 ntBASIC3.17□□□□□ -1.9
CHFRQ96EP1 SNORD56.5-201ENST00000364281 72 ntBASIC3.17□□□□□ -1.9
CHFRQ96EP1 DYNLT3P1-201ENST00000378574 347 ntBASIC3.17□□□□□ -1.9
CHFRQ96EP1 SNORD21-201ENST00000383953 95 ntBASIC3.17□□□□□ -1.9
CHFRQ96EP1 MIR10A-201ENST00000385043 110 ntBASIC3.17□□□□□ -1.9
CHFRQ96EP1 SNORA46.1-201ENST00000391069 153 ntBASIC3.17□□□□□ -1.9
CHFRQ96EP1 RNA5SP354-201ENST00000391247 136 ntBASIC3.17□□□□□ -1.9
CHFRQ96EP1 RNU1-139P-201ENST00000391307 165 ntBASIC3.17□□□□□ -1.9
CHFRQ96EP1 RAB28P5-201ENST00000427490 651 ntBASIC3.17□□□□□ -1.9
CHFRQ96EP1 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC3.17□□□□□ -1.9
CHFRQ96EP1 SEPT7P4-201ENST00000437076 306 ntBASIC3.17□□□□□ -1.9
CHFRQ96EP1 HMGN1P18-201ENST00000457642 277 ntBASIC3.17□□□□□ -1.9
CHFRQ96EP1 AC117440.1-201ENST00000474107 571 ntBASIC3.17□□□□□ -1.9
CHFRQ96EP1 AC092138.2-201ENST00000563811 428 ntTSL 5 BASIC3.17□□□□□ -1.9
CHFRQ96EP1 AL359881.1-201ENST00000602916 267 ntBASIC3.17□□□□□ -1.9
CHFRQ96EP1 RPL12P50-201ENST00000603116 116 ntBASIC3.17□□□□□ -1.9
CHFRQ96EP1 AC091965.1-202ENST00000607662 397 ntTSL 3 BASIC3.17□□□□□ -1.9
CHFRQ96EP1 AC107294.1-201ENST00000609524 467 ntBASIC3.17□□□□□ -1.9
CHFRQ96EP1 ZBBX-201ENST00000307529 3071 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
CHFRQ96EP1 ZBBX-204ENST00000392767 3071 ntAPPRIS ALT2 TSL 5 BASIC3.17□□□□□ -1.9
CHFRQ96EP1 AC138915.1-201ENST00000565427 1685 ntBASIC3.17□□□□□ -1.9
CHFRQ96EP1 AC010332.2-201ENST00000613083 1904 ntBASIC3.17□□□□□ -1.9
CHFRQ96EP1 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.17□□□□□ -1.9
CHFRQ96EP1 PRKACB-217ENST00000610457 4206 ntTSL 2 BASIC3.17□□□□□ -1.9
CHFRQ96EP1 PRKACB-218ENST00000610703 4240 ntTSL 2 BASIC3.17□□□□□ -1.9
CHFRQ96EP1 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.17□□□□□ -1.9
CHFRQ96EP1 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC3.16□□□□□ -1.9
CHFRQ96EP1 AC073325.2-201ENST00000339545 159 ntBASIC3.16□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 99 ms