Protein–RNA interactions for Protein: Q96DZ5

CLIP3, CAP-Gly domain-containing linker protein 3, humanhuman

Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3Q96DZ5 RNU6-918P-201ENST00000391219 106 ntBASIC3.22□□□□□ -1.89
CLIP3Q96DZ5 RNU4-30P-201ENST00000410245 143 ntBASIC3.22□□□□□ -1.89
CLIP3Q96DZ5 RN7SKP111-201ENST00000410349 271 ntBASIC3.22□□□□□ -1.89
CLIP3Q96DZ5 EIF4EP4-201ENST00000424916 578 ntBASIC3.22□□□□□ -1.89
CLIP3Q96DZ5 AC006028.1-201ENST00000438379 402 ntBASIC3.22□□□□□ -1.89
CLIP3Q96DZ5 Z96811.1-201ENST00000445880 108 ntBASIC3.22□□□□□ -1.89
CLIP3Q96DZ5 NDUFB4P10-201ENST00000452541 359 ntBASIC3.22□□□□□ -1.89
CLIP3Q96DZ5 AC146507.2-201ENST00000460608 476 ntBASIC3.22□□□□□ -1.89
CLIP3Q96DZ5 AF186996.7-201ENST00000492781 209 ntBASIC3.22□□□□□ -1.89
CLIP3Q96DZ5 AC091874.1-201ENST00000511402 339 ntBASIC3.22□□□□□ -1.89
CLIP3Q96DZ5 RNU2-31P-201ENST00000516954 155 ntBASIC3.22□□□□□ -1.89
CLIP3Q96DZ5 RN7SKP57-201ENST00000517248 293 ntBASIC3.22□□□□□ -1.89
CLIP3Q96DZ5 AC068992.1-202ENST00000519280 270 ntTSL 3 BASIC3.22□□□□□ -1.89
CLIP3Q96DZ5 AP000873.2-206ENST00000529811 429 ntTSL 2 BASIC3.22□□□□□ -1.89
CLIP3Q96DZ5 AC026333.2-201ENST00000542164 106 ntBASIC3.22□□□□□ -1.89
CLIP3Q96DZ5 LINC01965-204ENST00000545549 575 ntTSL 4 BASIC3.22□□□□□ -1.89
CLIP3Q96DZ5 AC027176.1-201ENST00000560204 514 ntBASIC3.22□□□□□ -1.89
CLIP3Q96DZ5 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC3.22□□□□□ -1.89
CLIP3Q96DZ5 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC3.22□□□□□ -1.89
CLIP3Q96DZ5 SNORD113-5-201ENST00000607261 78 ntBASIC3.22□□□□□ -1.89
CLIP3Q96DZ5 ST7-AS1_1.1-201ENST00000611142 116 ntBASIC3.22□□□□□ -1.89
CLIP3Q96DZ5 RMST_6.1-201ENST00000611980 203 ntBASIC3.22□□□□□ -1.89
CLIP3Q96DZ5 U6.106-201ENST00000636360 105 ntBASIC3.22□□□□□ -1.89
CLIP3Q96DZ5 ROS1-202ENST00000368508 7435 ntAPPRIS P2 TSL 1 (best) BASIC3.22□□□□□ -1.89
CLIP3Q96DZ5 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC3.21□□□□□ -1.89
CLIP3Q96DZ5 AC093010.3-201ENST00000570269 15214 ntBASIC3.21□□□□□ -1.9
CLIP3Q96DZ5 RRAS2-211ENST00000537760 2034 ntTSL 2 BASIC3.21□□□□□ -1.9
CLIP3Q96DZ5 KIAA1841-202ENST00000356719 2149 ntTSL 5 BASIC3.21□□□□□ -1.9
CLIP3Q96DZ5 RNA5SP361-201ENST00000362686 118 ntBASIC3.21□□□□□ -1.9
CLIP3Q96DZ5 RNU6-655P-201ENST00000362858 107 ntBASIC3.21□□□□□ -1.9
CLIP3Q96DZ5 RNA5SP197-201ENST00000363357 119 ntBASIC3.21□□□□□ -1.9
CLIP3Q96DZ5 RNU6-1020P-201ENST00000363684 107 ntBASIC3.21□□□□□ -1.9
CLIP3Q96DZ5 RNU6-1210P-201ENST00000363775 107 ntBASIC3.21□□□□□ -1.9
CLIP3Q96DZ5 RNU6-461P-201ENST00000364195 107 ntBASIC3.21□□□□□ -1.9
CLIP3Q96DZ5 Y_RNA.240-201ENST00000364469 95 ntBASIC3.21□□□□□ -1.9
CLIP3Q96DZ5 Y_RNA.275-201ENST00000364726 110 ntBASIC3.21□□□□□ -1.9
CLIP3Q96DZ5 Y_RNA.383-201ENST00000383855 97 ntBASIC3.21□□□□□ -1.9
CLIP3Q96DZ5 RNU6-1286P-201ENST00000383871 107 ntBASIC3.21□□□□□ -1.9
CLIP3Q96DZ5 RNU6-142P-201ENST00000384019 107 ntBASIC3.21□□□□□ -1.9
CLIP3Q96DZ5 MIR218-1-201ENST00000384999 110 ntBASIC3.21□□□□□ -1.9
CLIP3Q96DZ5 TRAJ6-201ENST00000390531 62 ntAPPRIS P1 BASIC3.21□□□□□ -1.9
CLIP3Q96DZ5 SNORA53-201ENST00000391141 249 ntBASIC3.21□□□□□ -1.9
CLIP3Q96DZ5 U6atac.2-201ENST00000408644 118 ntBASIC3.21□□□□□ -1.9
CLIP3Q96DZ5 RPL30P4-201ENST00000429309 333 ntBASIC3.21□□□□□ -1.9
CLIP3Q96DZ5 AL357552.1-201ENST00000445254 415 ntBASIC3.21□□□□□ -1.9
CLIP3Q96DZ5 RPS4XP2-201ENST00000458402 793 ntBASIC3.21□□□□□ -1.9
CLIP3Q96DZ5 RPL23AP67-201ENST00000465341 474 ntBASIC3.21□□□□□ -1.9
CLIP3Q96DZ5 AP000870.1-201ENST00000472927 406 ntBASIC3.21□□□□□ -1.9
CLIP3Q96DZ5 SNORA70.19-201ENST00000516717 90 ntBASIC3.21□□□□□ -1.9
CLIP3Q96DZ5 AC007536.1-201ENST00000533382 349 ntBASIC3.21□□□□□ -1.9
CLIP3Q96DZ5 AK6P2-201ENST00000549020 471 ntBASIC3.21□□□□□ -1.9
CLIP3Q96DZ5 GNG2-205ENST00000554736 569 ntAPPRIS P1 TSL 4 BASIC3.21□□□□□ -1.9
CLIP3Q96DZ5 MIR3616-201ENST00000584070 92 ntBASIC3.21□□□□□ -1.9
CLIP3Q96DZ5 AC004832.4-201ENST00000608952 331 ntBASIC3.21□□□□□ -1.9
CLIP3Q96DZ5 AC104971.4-201ENST00000622763 249 ntTSL 5 BASIC3.21□□□□□ -1.9
CLIP3Q96DZ5 GNAI3-201ENST00000369851 27174 ntAPPRIS P1 TSL 1 (best) BASIC3.21□□□□□ -1.9
CLIP3Q96DZ5 PWAR6-201ENST00000552334 4618 ntBASIC3.21□□□□□ -1.9
CLIP3Q96DZ5 VPS13C-203ENST00000395896 14579 ntAPPRIS ALT2 TSL 1 (best) BASIC3.21□□□□□ -1.9
CLIP3Q96DZ5 ERBIN-204ENST00000380943 6410 ntAPPRIS P3 TSL 1 (best) BASIC3.2□□□□□ -1.9
CLIP3Q96DZ5 TEX9-207ENST00000560582 2005 ntTSL 3 BASIC3.2□□□□□ -1.9
CLIP3Q96DZ5 MARCH7-202ENST00000409175 2402 ntAPPRIS P1 TSL 2 BASIC3.2□□□□□ -1.9
CLIP3Q96DZ5 SAMD9-201ENST00000379958 6852 ntAPPRIS P1 TSL 1 (best) BASIC3.2□□□□□ -1.9
CLIP3Q96DZ5 LINC01684-201ENST00000415182 2176 ntTSL 1 (best) BASIC3.2□□□□□ -1.9
CLIP3Q96DZ5 GYPA-201ENST00000324022 751 ntAPPRIS ALT2 TSL 1 (best) BASIC3.2□□□□□ -1.9
CLIP3Q96DZ5 Y_RNA.82-201ENST00000363000 102 ntBASIC3.2□□□□□ -1.9
CLIP3Q96DZ5 Y_RNA.92-201ENST00000363043 102 ntBASIC3.2□□□□□ -1.9
CLIP3Q96DZ5 Y_RNA.235-201ENST00000364412 102 ntBASIC3.2□□□□□ -1.9
CLIP3Q96DZ5 Y_RNA.306-201ENST00000365015 102 ntBASIC3.2□□□□□ -1.9
CLIP3Q96DZ5 Y_RNA.312-201ENST00000365089 102 ntBASIC3.2□□□□□ -1.9
CLIP3Q96DZ5 Y_RNA.322-201ENST00000365151 102 ntBASIC3.2□□□□□ -1.9
CLIP3Q96DZ5 RNU6-968P-201ENST00000384076 107 ntBASIC3.2□□□□□ -1.9
CLIP3Q96DZ5 Y_RNA.446-201ENST00000384178 104 ntBASIC3.2□□□□□ -1.9
CLIP3Q96DZ5 MIR627-201ENST00000384979 97 ntBASIC3.2□□□□□ -1.9
CLIP3Q96DZ5 RNU6ATAC10P-201ENST00000408635 111 ntBASIC3.2□□□□□ -1.9
CLIP3Q96DZ5 RNU6-394P-201ENST00000410735 107 ntBASIC3.2□□□□□ -1.9
CLIP3Q96DZ5 AL365277.2-201ENST00000415255 551 ntTSL 3 BASIC3.2□□□□□ -1.9
CLIP3Q96DZ5 AL451074.5-201ENST00000415894 435 ntBASIC3.2□□□□□ -1.9
CLIP3Q96DZ5 AIMP1P2-201ENST00000425294 312 ntBASIC3.2□□□□□ -1.9
CLIP3Q96DZ5 RPS12P18-201ENST00000442381 270 ntBASIC3.2□□□□□ -1.9
CLIP3Q96DZ5 Y_RNA.650-201ENST00000459002 102 ntBASIC3.2□□□□□ -1.9
CLIP3Q96DZ5 AL121594.1-201ENST00000475906 575 ntBASIC3.2□□□□□ -1.9
CLIP3Q96DZ5 AIG1P1-201ENST00000503376 148 ntBASIC3.2□□□□□ -1.9
CLIP3Q96DZ5 Y_RNA.777-201ENST00000516982 102 ntBASIC3.2□□□□□ -1.9
CLIP3Q96DZ5 RN7SKP272-201ENST00000516988 232 ntBASIC3.2□□□□□ -1.9
CLIP3Q96DZ5 AC016256.1-201ENST00000547971 354 ntBASIC3.2□□□□□ -1.9
CLIP3Q96DZ5 AC105245.1-201ENST00000581934 244 ntBASIC3.2□□□□□ -1.9
CLIP3Q96DZ5 Y_RNA.771-201ENST00000598668 102 ntBASIC3.2□□□□□ -1.9
CLIP3Q96DZ5 AC069294.1-201ENST00000608397 350 ntBASIC3.2□□□□□ -1.9
CLIP3Q96DZ5 Y_RNA.789-201ENST00000622480 102 ntBASIC3.2□□□□□ -1.9
CLIP3Q96DZ5 DLD-214ENST00000639772 421 ntTSL 5 BASIC3.2□□□□□ -1.9
CLIP3Q96DZ5 DCLRE1A-202ENST00000369305 4241 ntAPPRIS P1 TSL 5 BASIC3.19□□□□□ -1.9
CLIP3Q96DZ5 CHD9-213ENST00000564845 11504 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CLIP3Q96DZ5 BMP5-201ENST00000370830 3952 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CLIP3Q96DZ5 NBPF20-201ENST00000369373 18760 ntAPPRIS ALT2 TSL 5 BASIC3.19□□□□□ -1.9
CLIP3Q96DZ5 DEFB131A-201ENST00000334879 213 ntAPPRIS P1 TSL 1 (best) BASIC3.19□□□□□ -1.9
CLIP3Q96DZ5 RNU1-75P-201ENST00000347264 129 ntBASIC3.19□□□□□ -1.9
CLIP3Q96DZ5 UBE2WP1-201ENST00000362030 340 ntBASIC3.19□□□□□ -1.9
CLIP3Q96DZ5 Y_RNA.233-201ENST00000364407 101 ntBASIC3.19□□□□□ -1.9
CLIP3Q96DZ5 RNU6-81P-201ENST00000365608 104 ntBASIC3.19□□□□□ -1.9
CLIP3Q96DZ5 RNU6-804P-201ENST00000384286 107 ntBASIC3.19□□□□□ -1.9
Retrieved 100 of 98,524 protein–RNA pairs in 170.7 ms