Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC0.92□□□□□ -2.26
LMX1AQ8TE12 C9orf84-201ENST00000318737 4661 ntAPPRIS P3 TSL 1 (best) BASIC0.91□□□□□ -2.26
LMX1AQ8TE12 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC0.91□□□□□ -2.26
LMX1AQ8TE12 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC0.91□□□□□ -2.26
LMX1AQ8TE12 RNU6-1120P-201ENST00000362988 108 ntBASIC0.91□□□□□ -2.26
LMX1AQ8TE12 Y_RNA.159-201ENST00000363674 87 ntBASIC0.91□□□□□ -2.26
LMX1AQ8TE12 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC0.91□□□□□ -2.26
LMX1AQ8TE12 AC009158.1-206ENST00000417476 454 ntTSL 3 BASIC0.91□□□□□ -2.26
LMX1AQ8TE12 RPS27P16-201ENST00000425758 201 ntBASIC0.91□□□□□ -2.26
LMX1AQ8TE12 AF127577.5-201ENST00000449746 446 ntTSL 3 BASIC0.91□□□□□ -2.26
LMX1AQ8TE12 AC007395.1-201ENST00000451333 677 ntBASIC0.91□□□□□ -2.26
LMX1AQ8TE12 AC131571.1-202ENST00000454509 598 ntTSL 4 BASIC0.91□□□□□ -2.26
LMX1AQ8TE12 RPL31P3-201ENST00000458430 332 ntBASIC0.91□□□□□ -2.26
LMX1AQ8TE12 RPL9P9-202ENST00000466501 579 ntBASIC0.91□□□□□ -2.26
LMX1AQ8TE12 HMGN2P9-201ENST00000476875 229 ntBASIC0.91□□□□□ -2.26
LMX1AQ8TE12 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC0.91□□□□□ -2.26
LMX1AQ8TE12 AK3P2-201ENST00000507976 429 ntBASIC0.91□□□□□ -2.26
LMX1AQ8TE12 Y_RNA.670-201ENST00000516255 105 ntBASIC0.91□□□□□ -2.26
LMX1AQ8TE12 RNU6-567P-201ENST00000516746 107 ntBASIC0.91□□□□□ -2.26
LMX1AQ8TE12 AC008662.2-201ENST00000522426 389 ntTSL 5 BASIC0.91□□□□□ -2.26
LMX1AQ8TE12 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC0.91□□□□□ -2.26
LMX1AQ8TE12 AC090115.3-201ENST00000553218 849 ntBASIC0.91□□□□□ -2.26
LMX1AQ8TE12 AC019288.1-201ENST00000557918 224 ntBASIC0.91□□□□□ -2.26
LMX1AQ8TE12 AC009107.1-201ENST00000561923 330 ntTSL 3 BASIC0.91□□□□□ -2.26
LMX1AQ8TE12 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC0.91□□□□□ -2.26
LMX1AQ8TE12 MTATP6P24-201ENST00000576835 677 ntBASIC0.91□□□□□ -2.26
LMX1AQ8TE12 MIR4698-201ENST00000577795 80 ntBASIC0.91□□□□□ -2.26
LMX1AQ8TE12 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC0.91□□□□□ -2.26
LMX1AQ8TE12 AL136221.1-201ENST00000621449 509 ntBASIC0.91□□□□□ -2.26
LMX1AQ8TE12 AC005609.4-201ENST00000625071 447 ntBASIC0.91□□□□□ -2.26
LMX1AQ8TE12 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC0.91□□□□□ -2.26
LMX1AQ8TE12 RNU6-1019P-201ENST00000364424 107 ntBASIC0.9□□□□□ -2.27
LMX1AQ8TE12 RNU6-438P-201ENST00000365561 103 ntBASIC0.9□□□□□ -2.27
LMX1AQ8TE12 RNU6-342P-201ENST00000384521 104 ntBASIC0.9□□□□□ -2.27
LMX1AQ8TE12 Y_RNA.540-201ENST00000384638 111 ntBASIC0.9□□□□□ -2.27
LMX1AQ8TE12 MIR520A-201ENST00000384862 85 ntBASIC0.9□□□□□ -2.27
LMX1AQ8TE12 MIR194-1-201ENST00000384892 85 ntBASIC0.9□□□□□ -2.27
LMX1AQ8TE12 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC0.9□□□□□ -2.27
LMX1AQ8TE12 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC0.9□□□□□ -2.27
LMX1AQ8TE12 AC002456.1-201ENST00000415965 317 ntTSL 5 BASIC0.9□□□□□ -2.27
LMX1AQ8TE12 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC0.9□□□□□ -2.27
LMX1AQ8TE12 AC012306.1-201ENST00000423267 114 ntBASIC0.9□□□□□ -2.27
LMX1AQ8TE12 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC0.9□□□□□ -2.27
LMX1AQ8TE12 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC0.9□□□□□ -2.27
LMX1AQ8TE12 MTND4P32-201ENST00000437189 1237 ntBASIC0.9□□□□□ -2.27
LMX1AQ8TE12 HSPE1P9-201ENST00000440046 311 ntBASIC0.9□□□□□ -2.27
LMX1AQ8TE12 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC0.9□□□□□ -2.27
LMX1AQ8TE12 AL138808.1-201ENST00000441428 371 ntTSL 2 BASIC0.9□□□□□ -2.27
LMX1AQ8TE12 GYG2-AS1-201ENST00000445107 515 ntTSL 5 BASIC0.9□□□□□ -2.27
LMX1AQ8TE12 C1DP4-201ENST00000455429 424 ntBASIC0.9□□□□□ -2.27
LMX1AQ8TE12 RNU7-180P-201ENST00000459240 63 ntBASIC0.9□□□□□ -2.27
LMX1AQ8TE12 RNU7-14P-201ENST00000459331 62 ntBASIC0.9□□□□□ -2.27
LMX1AQ8TE12 SNRPGP7-201ENST00000469016 106 ntBASIC0.9□□□□□ -2.27
LMX1AQ8TE12 AC079140.3-201ENST00000511111 550 ntBASIC0.9□□□□□ -2.27
LMX1AQ8TE12 SNORD60.2-201ENST00000516883 86 ntBASIC0.9□□□□□ -2.27
LMX1AQ8TE12 RNU6-856P-201ENST00000516959 98 ntBASIC0.9□□□□□ -2.27
LMX1AQ8TE12 RNA5SP437-201ENST00000517249 129 ntBASIC0.9□□□□□ -2.27
LMX1AQ8TE12 MTCO2P4-201ENST00000517968 247 ntBASIC0.9□□□□□ -2.27
LMX1AQ8TE12 SUMO2P18-201ENST00000518873 252 ntBASIC0.9□□□□□ -2.27
LMX1AQ8TE12 AC016256.1-201ENST00000547971 354 ntBASIC0.9□□□□□ -2.27
LMX1AQ8TE12 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC0.9□□□□□ -2.27
LMX1AQ8TE12 AC092378.2-202ENST00000569328 445 ntTSL 3 BASIC0.9□□□□□ -2.27
LMX1AQ8TE12 MIR3913-1-201ENST00000577744 102 ntBASIC0.9□□□□□ -2.27
LMX1AQ8TE12 MIR4424-201ENST00000585257 86 ntBASIC0.9□□□□□ -2.27
LMX1AQ8TE12 AC109347.2-201ENST00000610220 349 ntBASIC0.9□□□□□ -2.27
LMX1AQ8TE12 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC0.9□□□□□ -2.27
LMX1AQ8TE12 AC095038.3-201ENST00000634439 195 ntBASIC0.9□□□□□ -2.27
LMX1AQ8TE12 AC010615.1-201ENST00000594254 1764 ntBASIC0.9□□□□□ -2.27
LMX1AQ8TE12 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC0.89□□□□□ -2.27
LMX1AQ8TE12 ZNF518A-210ENST00000624776 7994 ntAPPRIS P1 TSL 1 (best) BASIC0.89□□□□□ -2.27
LMX1AQ8TE12 ICE2P2-201ENST00000483823 2787 ntBASIC0.89□□□□□ -2.27
LMX1AQ8TE12 AL159152.1-201ENST00000635019 2587 ntBASIC0.89□□□□□ -2.27
LMX1AQ8TE12 RNU6-562P-201ENST00000362731 107 ntBASIC0.89□□□□□ -2.27
LMX1AQ8TE12 SNORA22-201ENST00000383907 134 ntBASIC0.89□□□□□ -2.27
LMX1AQ8TE12 RNU6-1103P-201ENST00000384150 107 ntBASIC0.89□□□□□ -2.27
LMX1AQ8TE12 SNORA70.7-201ENST00000384159 133 ntBASIC0.89□□□□□ -2.27
LMX1AQ8TE12 SNORA36A-201ENST00000384221 132 ntBASIC0.89□□□□□ -2.27
LMX1AQ8TE12 RNU6-517P-201ENST00000384362 110 ntBASIC0.89□□□□□ -2.27
LMX1AQ8TE12 SNORA22C-201ENST00000384614 134 ntBASIC0.89□□□□□ -2.27
LMX1AQ8TE12 LINC01312-201ENST00000412745 775 ntTSL 3 BASIC0.89□□□□□ -2.27
LMX1AQ8TE12 MTATP6P18-201ENST00000417994 673 ntBASIC0.89□□□□□ -2.27
LMX1AQ8TE12 RPL21P111-201ENST00000418453 477 ntBASIC0.89□□□□□ -2.27
LMX1AQ8TE12 AC004543.1-201ENST00000418764 369 ntTSL 5 BASIC0.89□□□□□ -2.27
LMX1AQ8TE12 PLCE1-AS2-203ENST00000433038 396 ntTSL 2 BASIC0.89□□□□□ -2.27
LMX1AQ8TE12 LINC02264-201ENST00000442020 576 ntTSL 3 BASIC0.89□□□□□ -2.27
LMX1AQ8TE12 AL031274.1-201ENST00000450334 232 ntBASIC0.89□□□□□ -2.27
LMX1AQ8TE12 ATP5J2P3-201ENST00000451550 258 ntBASIC0.89□□□□□ -2.27
LMX1AQ8TE12 OR2AQ1P-201ENST00000451972 200 ntBASIC0.89□□□□□ -2.27
LMX1AQ8TE12 OFD1P4Y-201ENST00000455273 1179 ntBASIC0.89□□□□□ -2.27
LMX1AQ8TE12 AC092991.1-201ENST00000477176 376 ntBASIC0.89□□□□□ -2.27
LMX1AQ8TE12 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC0.89□□□□□ -2.27
LMX1AQ8TE12 AC092608.1-201ENST00000503505 267 ntTSL 2 BASIC0.89□□□□□ -2.27
LMX1AQ8TE12 AC067942.3-201ENST00000512025 362 ntBASIC0.89□□□□□ -2.27
LMX1AQ8TE12 AC069113.1-201ENST00000517763 267 ntBASIC0.89□□□□□ -2.27
LMX1AQ8TE12 AP003097.2-201ENST00000530126 178 ntTSL 3 BASIC0.89□□□□□ -2.27
LMX1AQ8TE12 MIR5000-201ENST00000577717 103 ntBASIC0.89□□□□□ -2.27
LMX1AQ8TE12 AP003465.2-201ENST00000602571 373 ntBASIC0.89□□□□□ -2.27
LMX1AQ8TE12 AL353149.1-201ENST00000610667 244 ntBASIC0.89□□□□□ -2.27
LMX1AQ8TE12 AC072046.2-201ENST00000618366 268 ntBASIC0.89□□□□□ -2.27
LMX1AQ8TE12 AC245060.5-201ENST00000610778 3293 ntBASIC0.89□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 141.9 ms