Protein–RNA interactions for Protein: Q8NEL0

CCDC54, Coiled-coil domain-containing protein 54, humanhuman

Predictions only

Length 328 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54Q8NEL0 NDUFA5P4-201ENST00000436704 385 ntBASIC1.37□□□□□ -2.19
CCDC54Q8NEL0 AC245102.2-201ENST00000448956 180 ntBASIC1.37□□□□□ -2.19
CCDC54Q8NEL0 HSPE1P24-201ENST00000450782 238 ntBASIC1.37□□□□□ -2.19
CCDC54Q8NEL0 RNU1-131P-201ENST00000458943 161 ntBASIC1.37□□□□□ -2.19
CCDC54Q8NEL0 TRBV12-1-201ENST00000479785 344 ntBASIC1.37□□□□□ -2.19
CCDC54Q8NEL0 AL627309.4-201ENST00000496488 457 ntTSL 5 BASIC1.37□□□□□ -2.19
CCDC54Q8NEL0 AC096736.2-201ENST00000507972 175 ntTSL 3 BASIC1.37□□□□□ -2.19
CCDC54Q8NEL0 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.37□□□□□ -2.19
CCDC54Q8NEL0 AC064807.4-201ENST00000607201 407 ntBASIC1.37□□□□□ -2.19
CCDC54Q8NEL0 HTN1-205ENST00000610341 536 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
CCDC54Q8NEL0 ZNFX1-AS1_2.1-201ENST00000610973 93 ntBASIC1.37□□□□□ -2.19
CCDC54Q8NEL0 MIR8076-201ENST00000611401 83 ntBASIC1.37□□□□□ -2.19
CCDC54Q8NEL0 DLEU2_5.1-201ENST00000615567 84 ntBASIC1.37□□□□□ -2.19
CCDC54Q8NEL0 AL161722.3-201ENST00000605789 2983 ntBASIC1.37□□□□□ -2.19
CCDC54Q8NEL0 FAM135A-203ENST00000370479 5930 ntTSL 1 (best) BASIC1.37□□□□□ -2.19
CCDC54Q8NEL0 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.37□□□□□ -2.19
CCDC54Q8NEL0 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC1.36□□□□□ -2.19
CCDC54Q8NEL0 RNY4P14-201ENST00000363656 96 ntBASIC1.36□□□□□ -2.19
CCDC54Q8NEL0 DEFB125-201ENST00000382410 587 ntAPPRIS P1 TSL 1 (best) BASIC1.36□□□□□ -2.19
CCDC54Q8NEL0 RNU6-296P-201ENST00000384608 107 ntBASIC1.36□□□□□ -2.19
CCDC54Q8NEL0 TRAJ23-201ENST00000390514 63 ntAPPRIS P1 BASIC1.36□□□□□ -2.19
CCDC54Q8NEL0 ARL5AP1-201ENST00000418991 388 ntBASIC1.36□□□□□ -2.19
CCDC54Q8NEL0 Z82188.1-201ENST00000436709 154 ntBASIC1.36□□□□□ -2.19
CCDC54Q8NEL0 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC1.36□□□□□ -2.19
CCDC54Q8NEL0 LINC01077-201ENST00000452288 413 ntTSL 3 BASIC1.36□□□□□ -2.19
CCDC54Q8NEL0 AC096733.1-201ENST00000503844 402 ntTSL 3 BASIC1.36□□□□□ -2.19
CCDC54Q8NEL0 Y_RNA.675-201ENST00000516389 149 ntBASIC1.36□□□□□ -2.19
CCDC54Q8NEL0 SNORA31.17-201ENST00000516953 127 ntBASIC1.36□□□□□ -2.19
CCDC54Q8NEL0 MTND1P35-201ENST00000526739 508 ntBASIC1.36□□□□□ -2.19
CCDC54Q8NEL0 LINC02398-201ENST00000536666 431 ntTSL 3 BASIC1.36□□□□□ -2.19
CCDC54Q8NEL0 AC016256.1-201ENST00000547971 354 ntBASIC1.36□□□□□ -2.19
CCDC54Q8NEL0 AC026371.1-201ENST00000551867 419 ntBASIC1.36□□□□□ -2.19
CCDC54Q8NEL0 AL160236.1-201ENST00000556317 195 ntBASIC1.36□□□□□ -2.19
CCDC54Q8NEL0 MIR3683-201ENST00000580847 82 ntBASIC1.36□□□□□ -2.19
CCDC54Q8NEL0 MIR4513-201ENST00000581077 86 ntBASIC1.36□□□□□ -2.19
CCDC54Q8NEL0 FGF7P1-201ENST00000582820 288 ntBASIC1.36□□□□□ -2.19
CCDC54Q8NEL0 AC146944.4-201ENST00000602697 718 ntBASIC1.36□□□□□ -2.19
CCDC54Q8NEL0 B3GNTL1P2-201ENST00000603673 288 ntBASIC1.36□□□□□ -2.19
CCDC54Q8NEL0 BX248123.2-201ENST00000606318 124 ntBASIC1.36□□□□□ -2.19
CCDC54Q8NEL0 AC090517.2-201ENST00000614966 680 ntBASIC1.36□□□□□ -2.19
CCDC54Q8NEL0 EFCAB5-213ENST00000638539 168 ntTSL 5 BASIC1.36□□□□□ -2.19
CCDC54Q8NEL0 SAGE1-201ENST00000324447 2952 ntAPPRIS P2 TSL 5 BASIC1.36□□□□□ -2.19
CCDC54Q8NEL0 AC006026.1-201ENST00000444025 1803 ntBASIC1.36□□□□□ -2.19
CCDC54Q8NEL0 MTND4P5-201ENST00000435821 1374 ntBASIC1.35□□□□□ -2.19
CCDC54Q8NEL0 RNU6-112P-201ENST00000363599 104 ntBASIC1.35□□□□□ -2.19
CCDC54Q8NEL0 Y_RNA.212-201ENST00000364177 102 ntBASIC1.35□□□□□ -2.19
CCDC54Q8NEL0 RNU6-534P-201ENST00000364877 106 ntBASIC1.35□□□□□ -2.19
CCDC54Q8NEL0 SNORA67.2-201ENST00000384300 149 ntBASIC1.35□□□□□ -2.19
CCDC54Q8NEL0 MIR521-1-201ENST00000384902 87 ntBASIC1.35□□□□□ -2.19
CCDC54Q8NEL0 MIR30A-201ENST00000385092 71 ntBASIC1.35□□□□□ -2.19
CCDC54Q8NEL0 TRAJ21-201ENST00000390516 55 ntAPPRIS P1 BASIC1.35□□□□□ -2.19
CCDC54Q8NEL0 SNORA26.9-201ENST00000391322 122 ntBASIC1.35□□□□□ -2.19
CCDC54Q8NEL0 MIR548F1-201ENST00000408667 84 ntBASIC1.35□□□□□ -2.19
CCDC54Q8NEL0 RNA5SP504-201ENST00000410676 117 ntBASIC1.35□□□□□ -2.19
CCDC54Q8NEL0 RPS26P42-201ENST00000413485 326 ntBASIC1.35□□□□□ -2.19
CCDC54Q8NEL0 PLCL2-AS1-201ENST00000414844 311 ntTSL 2 BASIC1.35□□□□□ -2.19
CCDC54Q8NEL0 SNRPEP10-201ENST00000420249 274 ntBASIC1.35□□□□□ -2.19
CCDC54Q8NEL0 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.35□□□□□ -2.19
CCDC54Q8NEL0 AC060773.1-201ENST00000421698 310 ntBASIC1.35□□□□□ -2.19
CCDC54Q8NEL0 AC245047.4-201ENST00000433189 144 ntBASIC1.35□□□□□ -2.19
CCDC54Q8NEL0 MTND3P21-201ENST00000433774 331 ntBASIC1.35□□□□□ -2.19
CCDC54Q8NEL0 MTCO3P8-201ENST00000453691 755 ntBASIC1.35□□□□□ -2.19
CCDC54Q8NEL0 AL160162.1-201ENST00000456715 442 ntTSL 3 BASIC1.35□□□□□ -2.19
CCDC54Q8NEL0 HMGN2P23-201ENST00000456759 269 ntBASIC1.35□□□□□ -2.19
CCDC54Q8NEL0 AL024497.2-201ENST00000457081 317 ntTSL 3 BASIC1.35□□□□□ -2.19
CCDC54Q8NEL0 RPL23AP75-201ENST00000491601 451 ntBASIC1.35□□□□□ -2.19
CCDC54Q8NEL0 MTCO1P29-201ENST00000496868 288 ntBASIC1.35□□□□□ -2.19
CCDC54Q8NEL0 AC097473.1-201ENST00000508142 408 ntBASIC1.35□□□□□ -2.19
CCDC54Q8NEL0 SNORA25.15-201ENST00000516487 89 ntBASIC1.35□□□□□ -2.19
CCDC54Q8NEL0 RNU5F-4P-201ENST00000516581 114 ntBASIC1.35□□□□□ -2.19
CCDC54Q8NEL0 RNU6-1088P-201ENST00000516850 104 ntBASIC1.35□□□□□ -2.19
CCDC54Q8NEL0 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC1.35□□□□□ -2.19
CCDC54Q8NEL0 AC009754.1-201ENST00000566282 540 ntTSL 4 BASIC1.35□□□□□ -2.19
CCDC54Q8NEL0 AC011939.2-201ENST00000567396 428 ntTSL 3 BASIC1.35□□□□□ -2.19
CCDC54Q8NEL0 U1.36-201ENST00000620684 176 ntBASIC1.35□□□□□ -2.19
CCDC54Q8NEL0 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC1.35□□□□□ -2.19
CCDC54Q8NEL0 CENPQ-201ENST00000335783 1733 ntAPPRIS P1 TSL 1 (best) BASIC1.35□□□□□ -2.19
CCDC54Q8NEL0 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.34□□□□□ -2.19
CCDC54Q8NEL0 MIR424-201ENST00000362227 98 ntBASIC1.34□□□□□ -2.19
CCDC54Q8NEL0 Y_RNA.89-201ENST00000363031 102 ntBASIC1.34□□□□□ -2.19
CCDC54Q8NEL0 RNU6-623P-201ENST00000363143 105 ntBASIC1.34□□□□□ -2.19
CCDC54Q8NEL0 RNU4-56P-201ENST00000364700 142 ntBASIC1.34□□□□□ -2.19
CCDC54Q8NEL0 RNU6-338P-201ENST00000383888 105 ntBASIC1.34□□□□□ -2.19
CCDC54Q8NEL0 RNU6-418P-201ENST00000384035 107 ntBASIC1.34□□□□□ -2.19
CCDC54Q8NEL0 RNU6-214P-201ENST00000384130 107 ntBASIC1.34□□□□□ -2.19
CCDC54Q8NEL0 Y_RNA.450-201ENST00000384198 113 ntBASIC1.34□□□□□ -2.19
CCDC54Q8NEL0 MIR181A1-201ENST00000385026 110 ntBASIC1.34□□□□□ -2.19
CCDC54Q8NEL0 ZNF885P-201ENST00000420174 1098 ntBASIC1.34□□□□□ -2.19
CCDC54Q8NEL0 AL358453.1-201ENST00000422522 250 ntBASIC1.34□□□□□ -2.19
CCDC54Q8NEL0 AL138799.4-201ENST00000443939 643 ntTSL 3 BASIC1.34□□□□□ -2.19
CCDC54Q8NEL0 U8.21-201ENST00000459536 136 ntBASIC1.34□□□□□ -2.19
CCDC54Q8NEL0 AC007215.1-201ENST00000464893 276 ntBASIC1.34□□□□□ -2.19
CCDC54Q8NEL0 HMGN2P9-201ENST00000476875 229 ntBASIC1.34□□□□□ -2.19
CCDC54Q8NEL0 FO393415.2-201ENST00000480085 343 ntBASIC1.34□□□□□ -2.19
CCDC54Q8NEL0 RNU6-567P-201ENST00000516746 107 ntBASIC1.34□□□□□ -2.19
CCDC54Q8NEL0 RNU6-256P-201ENST00000516747 97 ntBASIC1.34□□□□□ -2.19
CCDC54Q8NEL0 RNU6-295P-201ENST00000516901 104 ntBASIC1.34□□□□□ -2.19
CCDC54Q8NEL0 AC109635.3-201ENST00000529536 185 ntBASIC1.34□□□□□ -2.19
CCDC54Q8NEL0 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC1.34□□□□□ -2.19
CCDC54Q8NEL0 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.34□□□□□ -2.19
Retrieved 100 of 98,524 protein–RNA pairs in 109.9 ms