Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 LINC02301-203ENST00000555798 789 ntTSL 3 BASIC0.74□□□□□ -2.29
CCDC112Q8NEF3 AC138625.2-201ENST00000563968 551 ntTSL 3 BASIC0.74□□□□□ -2.29
CCDC112Q8NEF3 AC091805.2-201ENST00000603848 235 ntBASIC0.74□□□□□ -2.29
CCDC112Q8NEF3 AL590095.2-201ENST00000604136 117 ntBASIC0.74□□□□□ -2.29
CCDC112Q8NEF3 AC040896.1-201ENST00000613819 479 ntBASIC0.74□□□□□ -2.29
CCDC112Q8NEF3 AC008250.2-201ENST00000615261 205 ntBASIC0.74□□□□□ -2.29
CCDC112Q8NEF3 MESTIT1_1.1-201ENST00000618871 140 ntBASIC0.74□□□□□ -2.29
CCDC112Q8NEF3 LINC01068-202ENST00000620874 626 ntTSL 3 BASIC0.74□□□□□ -2.29
CCDC112Q8NEF3 U6.114-201ENST00000636407 96 ntBASIC0.74□□□□□ -2.29
CCDC112Q8NEF3 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.74□□□□□ -2.29
CCDC112Q8NEF3 BX322639.1-202ENST00000423987 2213 ntBASIC0.73□□□□□ -2.29
CCDC112Q8NEF3 Y_RNA.393-201ENST00000383936 102 ntBASIC0.73□□□□□ -2.29
CCDC112Q8NEF3 COX6CP10-201ENST00000416832 224 ntBASIC0.73□□□□□ -2.29
CCDC112Q8NEF3 AC010099.3-201ENST00000423896 409 ntBASIC0.73□□□□□ -2.29
CCDC112Q8NEF3 HSFY7P-201ENST00000432672 318 ntBASIC0.73□□□□□ -2.29
CCDC112Q8NEF3 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC0.73□□□□□ -2.29
CCDC112Q8NEF3 USP9YP28-201ENST00000435142 589 ntBASIC0.73□□□□□ -2.29
CCDC112Q8NEF3 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC0.73□□□□□ -2.29
CCDC112Q8NEF3 HSFY8P-201ENST00000437934 318 ntBASIC0.73□□□□□ -2.29
CCDC112Q8NEF3 AC073614.1-201ENST00000438690 650 ntBASIC0.73□□□□□ -2.29
CCDC112Q8NEF3 RNU6-1132P-201ENST00000459214 107 ntBASIC0.73□□□□□ -2.29
CCDC112Q8NEF3 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC0.73□□□□□ -2.29
CCDC112Q8NEF3 AC091435.1-201ENST00000505442 584 ntBASIC0.73□□□□□ -2.29
CCDC112Q8NEF3 Vault.3-201ENST00000516676 95 ntBASIC0.73□□□□□ -2.29
CCDC112Q8NEF3 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC0.73□□□□□ -2.29
CCDC112Q8NEF3 AC009930.1-201ENST00000522330 191 ntTSL 5 BASIC0.73□□□□□ -2.29
CCDC112Q8NEF3 DEFB131C-201ENST00000528817 165 ntBASIC0.73□□□□□ -2.29
CCDC112Q8NEF3 AC103996.1-201ENST00000555468 102 ntBASIC0.73□□□□□ -2.29
CCDC112Q8NEF3 AC009145.3-201ENST00000567386 476 ntTSL 3 BASIC0.73□□□□□ -2.29
CCDC112Q8NEF3 TMF1P1-201ENST00000576058 373 ntBASIC0.73□□□□□ -2.29
CCDC112Q8NEF3 MIR4709-201ENST00000577272 72 ntBASIC0.73□□□□□ -2.29
CCDC112Q8NEF3 MIR4714-201ENST00000580728 77 ntBASIC0.73□□□□□ -2.29
CCDC112Q8NEF3 AP001836.1-201ENST00000604675 523 ntBASIC0.73□□□□□ -2.29
CCDC112Q8NEF3 AC064807.4-201ENST00000607201 407 ntBASIC0.73□□□□□ -2.29
CCDC112Q8NEF3 AL391834.2-201ENST00000609982 546 ntBASIC0.73□□□□□ -2.29
CCDC112Q8NEF3 TUSC7.1-201ENST00000610969 165 ntBASIC0.73□□□□□ -2.29
CCDC112Q8NEF3 AL133173.2-201ENST00000614270 90 ntBASIC0.73□□□□□ -2.29
CCDC112Q8NEF3 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC0.73□□□□□ -2.29
CCDC112Q8NEF3 FAM19A1-204ENST00000617084 159 ntTSL 5 BASIC0.73□□□□□ -2.29
CCDC112Q8NEF3 SNORA33-201ENST00000363664 130 ntBASIC0.72□□□□□ -2.29
CCDC112Q8NEF3 Y_RNA.504-201ENST00000384481 104 ntBASIC0.72□□□□□ -2.29
CCDC112Q8NEF3 MIR508-201ENST00000384857 115 ntBASIC0.72□□□□□ -2.29
CCDC112Q8NEF3 MIR454-201ENST00000390180 115 ntBASIC0.72□□□□□ -2.29
CCDC112Q8NEF3 AC114482.1-201ENST00000418010 247 ntBASIC0.72□□□□□ -2.29
CCDC112Q8NEF3 AC069079.1-201ENST00000419889 400 ntTSL 3 BASIC0.72□□□□□ -2.29
CCDC112Q8NEF3 AL135908.1-201ENST00000431394 446 ntTSL 3 BASIC0.72□□□□□ -2.29
CCDC112Q8NEF3 RPS26P45-201ENST00000471748 340 ntBASIC0.72□□□□□ -2.29
CCDC112Q8NEF3 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC0.72□□□□□ -2.29
CCDC112Q8NEF3 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC0.72□□□□□ -2.29
CCDC112Q8NEF3 RNU6-311P-201ENST00000516224 102 ntBASIC0.72□□□□□ -2.29
CCDC112Q8NEF3 RNU6-197P-201ENST00000516680 100 ntBASIC0.72□□□□□ -2.29
CCDC112Q8NEF3 RNU6-567P-201ENST00000516746 107 ntBASIC0.72□□□□□ -2.29
CCDC112Q8NEF3 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC0.72□□□□□ -2.29
CCDC112Q8NEF3 AP003072.2-201ENST00000527756 676 ntBASIC0.72□□□□□ -2.29
CCDC112Q8NEF3 ELOCP32-201ENST00000548625 324 ntBASIC0.72□□□□□ -2.29
CCDC112Q8NEF3 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC0.72□□□□□ -2.29
CCDC112Q8NEF3 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC0.72□□□□□ -2.29
CCDC112Q8NEF3 RN7SL793P-201ENST00000583259 296 ntBASIC0.72□□□□□ -2.29
CCDC112Q8NEF3 B3GNTL1P2-201ENST00000603673 288 ntBASIC0.72□□□□□ -2.29
CCDC112Q8NEF3 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC0.72□□□□□ -2.29
CCDC112Q8NEF3 AP000240.1-201ENST00000609910 452 ntBASIC0.72□□□□□ -2.29
CCDC112Q8NEF3 SOX2OT_exon1.1-201ENST00000614902 232 ntBASIC0.72□□□□□ -2.29
CCDC112Q8NEF3 AC022418.1-201ENST00000624118 445 ntBASIC0.72□□□□□ -2.29
CCDC112Q8NEF3 RNU6-1123P-201ENST00000362347 106 ntBASIC0.71□□□□□ -2.3
CCDC112Q8NEF3 RNU6-562P-201ENST00000362731 107 ntBASIC0.71□□□□□ -2.3
CCDC112Q8NEF3 RNA5SP259-201ENST00000365541 109 ntBASIC0.71□□□□□ -2.3
CCDC112Q8NEF3 RNU6-827P-201ENST00000365553 106 ntBASIC0.71□□□□□ -2.3
CCDC112Q8NEF3 Y_RNA.480-201ENST00000384364 102 ntBASIC0.71□□□□□ -2.3
CCDC112Q8NEF3 MIR19B1-201ENST00000384829 87 ntBASIC0.71□□□□□ -2.3
CCDC112Q8NEF3 MIR208B-201ENST00000401172 77 ntBASIC0.71□□□□□ -2.3
CCDC112Q8NEF3 Y_RNA.598-201ENST00000410480 95 ntBASIC0.71□□□□□ -2.3
CCDC112Q8NEF3 RNU2-64P-201ENST00000411315 191 ntBASIC0.71□□□□□ -2.3
CCDC112Q8NEF3 AC105271.1-202ENST00000411417 445 ntTSL 3 BASIC0.71□□□□□ -2.3
CCDC112Q8NEF3 AC012306.1-201ENST00000423267 114 ntBASIC0.71□□□□□ -2.3
CCDC112Q8NEF3 AL596276.1-201ENST00000434465 418 ntBASIC0.71□□□□□ -2.3
CCDC112Q8NEF3 LINC01032-201ENST00000451690 276 ntTSL 5 BASIC0.71□□□□□ -2.3
CCDC112Q8NEF3 ZNF114P1-201ENST00000453500 292 ntBASIC0.71□□□□□ -2.3
CCDC112Q8NEF3 PLSCR5-AS1-201ENST00000473817 450 ntTSL 3 BASIC0.71□□□□□ -2.3
CCDC112Q8NEF3 AC117454.1-201ENST00000491120 168 ntBASIC0.71□□□□□ -2.3
CCDC112Q8NEF3 AC079382.1-201ENST00000493346 557 ntBASIC0.71□□□□□ -2.3
CCDC112Q8NEF3 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC0.71□□□□□ -2.3
CCDC112Q8NEF3 RNU6-322P-201ENST00000516010 103 ntBASIC0.71□□□□□ -2.3
CCDC112Q8NEF3 RNU2-69P-201ENST00000516061 100 ntBASIC0.71□□□□□ -2.3
CCDC112Q8NEF3 SNORD27.1-201ENST00000516319 72 ntBASIC0.71□□□□□ -2.3
CCDC112Q8NEF3 TPRKBP2-201ENST00000565969 475 ntBASIC0.71□□□□□ -2.3
CCDC112Q8NEF3 AC025917.1-202ENST00000566344 635 ntTSL 5 BASIC0.71□□□□□ -2.3
CCDC112Q8NEF3 AC097717.1-249ENST00000608040 401 ntTSL 5 BASIC0.71□□□□□ -2.3
CCDC112Q8NEF3 AC009509.4-201ENST00000619202 509 ntBASIC0.71□□□□□ -2.3
CCDC112Q8NEF3 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC0.71□□□□□ -2.3
CCDC112Q8NEF3 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC0.71□□□□□ -2.3
CCDC112Q8NEF3 AC106754.1-201ENST00000562632 1513 ntBASIC0.7□□□□□ -2.3
CCDC112Q8NEF3 RNU6-393P-201ENST00000384475 107 ntBASIC0.7□□□□□ -2.3
CCDC112Q8NEF3 TRAJ41-201ENST00000390496 62 ntAPPRIS P1 BASIC0.7□□□□□ -2.3
CCDC112Q8NEF3 SNORA16.2-201ENST00000390991 127 ntBASIC0.7□□□□□ -2.3
CCDC112Q8NEF3 MIR1283-1-201ENST00000408494 87 ntBASIC0.7□□□□□ -2.3
CCDC112Q8NEF3 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC0.7□□□□□ -2.3
CCDC112Q8NEF3 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC0.7□□□□□ -2.3
CCDC112Q8NEF3 UBE2D3P4-201ENST00000441973 436 ntBASIC0.7□□□□□ -2.3
CCDC112Q8NEF3 AL031274.1-201ENST00000450334 232 ntBASIC0.7□□□□□ -2.3
CCDC112Q8NEF3 SNORD124-201ENST00000459577 104 ntBASIC0.7□□□□□ -2.3
Retrieved 100 of 98,524 protein–RNA pairs in 121 ms