Protein–RNA interactions for Protein: Q8NDQ6

ZNF540, Zinc finger protein 540, humanhuman

Predictions only

Length 660 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540Q8NDQ6 AC022306.2-201ENST00000617563 647 ntBASIC1.68□□□□□ -2.14
ZNF540Q8NDQ6 AC009248.2-201ENST00000619826 254 ntBASIC1.68□□□□□ -2.14
ZNF540Q8NDQ6 CDKN3-212ENST00000620759 196 ntTSL 5 BASIC1.68□□□□□ -2.14
ZNF540Q8NDQ6 AC092794.2-201ENST00000620933 563 ntBASIC1.68□□□□□ -2.14
ZNF540Q8NDQ6 AL133216.2-202ENST00000634512 349 ntBASIC1.68□□□□□ -2.14
ZNF540Q8NDQ6 PI15-201ENST00000260113 6732 ntAPPRIS P1 TSL 1 (best) BASIC1.68□□□□□ -2.14
ZNF540Q8NDQ6 RNU4-15P-201ENST00000362613 141 ntBASIC1.67□□□□□ -2.14
ZNF540Q8NDQ6 Y_RNA.184-201ENST00000363884 108 ntBASIC1.67□□□□□ -2.14
ZNF540Q8NDQ6 Y_RNA.301-201ENST00000364990 103 ntBASIC1.67□□□□□ -2.14
ZNF540Q8NDQ6 TSACC-205ENST00000368255 751 ntAPPRIS P1 TSL 1 (best) BASIC1.67□□□□□ -2.14
ZNF540Q8NDQ6 RNU6-876P-201ENST00000391295 104 ntBASIC1.67□□□□□ -2.14
ZNF540Q8NDQ6 RPL21P111-201ENST00000418453 477 ntBASIC1.67□□□□□ -2.14
ZNF540Q8NDQ6 AC123900.1-201ENST00000420390 96 ntBASIC1.67□□□□□ -2.14
ZNF540Q8NDQ6 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC1.67□□□□□ -2.14
ZNF540Q8NDQ6 MTCO1P44-201ENST00000441935 243 ntBASIC1.67□□□□□ -2.14
ZNF540Q8NDQ6 MTND4P18-201ENST00000447010 465 ntBASIC1.67□□□□□ -2.14
ZNF540Q8NDQ6 AC087477.1-201ENST00000465747 340 ntBASIC1.67□□□□□ -2.14
ZNF540Q8NDQ6 RPL31P58-201ENST00000469001 379 ntBASIC1.67□□□□□ -2.14
ZNF540Q8NDQ6 HMGN1P13-201ENST00000505795 138 ntBASIC1.67□□□□□ -2.14
ZNF540Q8NDQ6 RNU6-507P-201ENST00000516045 100 ntBASIC1.67□□□□□ -2.14
ZNF540Q8NDQ6 RNU6ATAC12P-201ENST00000516542 115 ntBASIC1.67□□□□□ -2.14
ZNF540Q8NDQ6 RNU6-1088P-201ENST00000516850 104 ntBASIC1.67□□□□□ -2.14
ZNF540Q8NDQ6 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
ZNF540Q8NDQ6 TMCO5B-203ENST00000529623 509 ntTSL 4 BASIC1.67□□□□□ -2.14
ZNF540Q8NDQ6 MIR4742-201ENST00000581069 85 ntBASIC1.67□□□□□ -2.14
ZNF540Q8NDQ6 MIR548S-201ENST00000581352 82 ntBASIC1.67□□□□□ -2.14
ZNF540Q8NDQ6 MIR3672-201ENST00000584290 82 ntBASIC1.67□□□□□ -2.14
ZNF540Q8NDQ6 U2.17-201ENST00000611454 95 ntBASIC1.67□□□□□ -2.14
ZNF540Q8NDQ6 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC1.67□□□□□ -2.14
ZNF540Q8NDQ6 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC1.67□□□□□ -2.14
ZNF540Q8NDQ6 FSD1L-201ENST00000374707 7062 ntTSL 1 (best) BASIC1.67□□□□□ -2.14
ZNF540Q8NDQ6 FSIP2-202ENST00000424728 20788 ntAPPRIS P2 TSL 5 BASIC1.66□□□□□ -2.14
ZNF540Q8NDQ6 RNU6-1252P-201ENST00000363054 104 ntBASIC1.66□□□□□ -2.14
ZNF540Q8NDQ6 SNORA72.1-201ENST00000363485 129 ntBASIC1.66□□□□□ -2.14
ZNF540Q8NDQ6 RNU6-414P-201ENST00000363705 104 ntBASIC1.66□□□□□ -2.14
ZNF540Q8NDQ6 SNORD48-201ENST00000364953 64 ntBASIC1.66□□□□□ -2.14
ZNF540Q8NDQ6 Y_RNA.373-201ENST00000365600 103 ntBASIC1.66□□□□□ -2.14
ZNF540Q8NDQ6 Y_RNA.414-201ENST00000384011 101 ntBASIC1.66□□□□□ -2.14
ZNF540Q8NDQ6 Y_RNA.530-201ENST00000384587 101 ntBASIC1.66□□□□□ -2.14
ZNF540Q8NDQ6 SNORD73A-201ENST00000386062 65 ntBASIC1.66□□□□□ -2.14
ZNF540Q8NDQ6 EIF4E2P1-201ENST00000393781 255 ntBASIC1.66□□□□□ -2.14
ZNF540Q8NDQ6 AL117339.3-201ENST00000418733 162 ntBASIC1.66□□□□□ -2.14
ZNF540Q8NDQ6 EBAG9P1-201ENST00000418955 543 ntBASIC1.66□□□□□ -2.14
ZNF540Q8NDQ6 MTND4LP11-201ENST00000422184 280 ntBASIC1.66□□□□□ -2.14
ZNF540Q8NDQ6 AC078809.1-201ENST00000427601 140 ntBASIC1.66□□□□□ -2.14
ZNF540Q8NDQ6 AC244670.1-201ENST00000436879 112 ntBASIC1.66□□□□□ -2.14
ZNF540Q8NDQ6 AL591501.1-201ENST00000439992 495 ntTSL 5 BASIC1.66□□□□□ -2.14
ZNF540Q8NDQ6 AC243964.1-201ENST00000441814 261 ntBASIC1.66□□□□□ -2.14
ZNF540Q8NDQ6 AC013470.1-201ENST00000453438 462 ntBASIC1.66□□□□□ -2.14
ZNF540Q8NDQ6 Y_RNA.638-201ENST00000459374 113 ntBASIC1.66□□□□□ -2.14
ZNF540Q8NDQ6 RNU6-329P-201ENST00000459618 107 ntBASIC1.66□□□□□ -2.14
ZNF540Q8NDQ6 AC007547.1-201ENST00000462177 490 ntBASIC1.66□□□□□ -2.14
ZNF540Q8NDQ6 AC091951.2-201ENST00000500762 203 ntBASIC1.66□□□□□ -2.14
ZNF540Q8NDQ6 SNORA19.2-201ENST00000516013 114 ntBASIC1.66□□□□□ -2.14
ZNF540Q8NDQ6 RNU4-49P-201ENST00000516080 140 ntBASIC1.66□□□□□ -2.14
ZNF540Q8NDQ6 RNA5SP458-201ENST00000516188 119 ntBASIC1.66□□□□□ -2.14
ZNF540Q8NDQ6 RNU6-864P-201ENST00000516256 108 ntBASIC1.66□□□□□ -2.14
ZNF540Q8NDQ6 SNORA31.17-201ENST00000516953 127 ntBASIC1.66□□□□□ -2.14
ZNF540Q8NDQ6 IL7-206ENST00000520269 456 ntTSL 3 BASIC1.66□□□□□ -2.14
ZNF540Q8NDQ6 LINC02442-201ENST00000537732 343 ntTSL 3 BASIC1.66□□□□□ -2.14
ZNF540Q8NDQ6 AL121579.1-201ENST00000555129 305 ntBASIC1.66□□□□□ -2.14
ZNF540Q8NDQ6 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC1.66□□□□□ -2.14
ZNF540Q8NDQ6 MIR3618-201ENST00000580330 88 ntBASIC1.66□□□□□ -2.14
ZNF540Q8NDQ6 EAF1-AS1-207ENST00000599742 772 ntTSL 5 BASIC1.66□□□□□ -2.14
ZNF540Q8NDQ6 EMCN-202ENST00000305864 1575 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
ZNF540Q8NDQ6 MBNL3-212ENST00000538204 11294 ntTSL 1 (best) BASIC1.66□□□□□ -2.14
ZNF540Q8NDQ6 RNU6-37P-201ENST00000362692 107 ntBASIC1.65□□□□□ -2.15
ZNF540Q8NDQ6 Y_RNA.72-201ENST00000362894 103 ntBASIC1.65□□□□□ -2.15
ZNF540Q8NDQ6 Y_RNA.100-201ENST00000363141 102 ntBASIC1.65□□□□□ -2.15
ZNF540Q8NDQ6 RNU6-11P-201ENST00000364234 107 ntBASIC1.65□□□□□ -2.15
ZNF540Q8NDQ6 RNU6-25P-201ENST00000383873 107 ntBASIC1.65□□□□□ -2.15
ZNF540Q8NDQ6 RNU6-1-201ENST00000383898 107 ntBASIC1.65□□□□□ -2.15
ZNF540Q8NDQ6 RNU6-48P-201ENST00000384161 107 ntBASIC1.65□□□□□ -2.15
ZNF540Q8NDQ6 RNU6-36P-201ENST00000384172 107 ntBASIC1.65□□□□□ -2.15
ZNF540Q8NDQ6 RNU6-4P-201ENST00000384205 107 ntBASIC1.65□□□□□ -2.15
ZNF540Q8NDQ6 RNU6-5P-201ENST00000384238 107 ntBASIC1.65□□□□□ -2.15
ZNF540Q8NDQ6 RNU6-3P-201ENST00000384314 107 ntBASIC1.65□□□□□ -2.15
ZNF540Q8NDQ6 Y_RNA.480-201ENST00000384364 102 ntBASIC1.65□□□□□ -2.15
ZNF540Q8NDQ6 RNU6-16P-201ENST00000384385 107 ntBASIC1.65□□□□□ -2.15
ZNF540Q8NDQ6 RNU6-15P-201ENST00000384534 107 ntBASIC1.65□□□□□ -2.15
ZNF540Q8NDQ6 RNU6-2-201ENST00000384627 107 ntBASIC1.65□□□□□ -2.15
ZNF540Q8NDQ6 RNU6-29P-201ENST00000384637 107 ntBASIC1.65□□□□□ -2.15
ZNF540Q8NDQ6 RNU6-9-201ENST00000384776 107 ntBASIC1.65□□□□□ -2.15
ZNF540Q8NDQ6 RNU6-33P-201ENST00000384793 107 ntBASIC1.65□□□□□ -2.15
ZNF540Q8NDQ6 MIR764-201ENST00000390811 85 ntBASIC1.65□□□□□ -2.15
ZNF540Q8NDQ6 MTCYBP2-201ENST00000407745 171 ntBASIC1.65□□□□□ -2.15
ZNF540Q8NDQ6 Y_RNA.604-201ENST00000410574 102 ntBASIC1.65□□□□□ -2.15
ZNF540Q8NDQ6 RNU6-293P-201ENST00000411259 106 ntBASIC1.65□□□□□ -2.15
ZNF540Q8NDQ6 ARL5AP1-201ENST00000418991 388 ntBASIC1.65□□□□□ -2.15
ZNF540Q8NDQ6 PSPC1-AS2-201ENST00000423023 376 ntTSL 3 BASIC1.65□□□□□ -2.15
ZNF540Q8NDQ6 FTH1P12-201ENST00000432137 551 ntBASIC1.65□□□□□ -2.15
ZNF540Q8NDQ6 NDUFA5P4-201ENST00000436704 385 ntBASIC1.65□□□□□ -2.15
ZNF540Q8NDQ6 AC092755.1-201ENST00000441746 97 ntTSL 3 BASIC1.65□□□□□ -2.15
ZNF540Q8NDQ6 AL354733.1-201ENST00000458016 476 ntTSL 3 BASIC1.65□□□□□ -2.15
ZNF540Q8NDQ6 AC130509.1-201ENST00000464158 433 ntBASIC1.65□□□□□ -2.15
ZNF540Q8NDQ6 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.65□□□□□ -2.15
ZNF540Q8NDQ6 CARD18-203ENST00000532895 422 ntTSL 2 BASIC1.65□□□□□ -2.15
ZNF540Q8NDQ6 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.65□□□□□ -2.15
ZNF540Q8NDQ6 AC010928.2-201ENST00000588017 287 ntBASIC1.65□□□□□ -2.15
ZNF540Q8NDQ6 RNU6-6P-201ENST00000606623 107 ntBASIC1.65□□□□□ -2.15
Retrieved 100 of 98,524 protein–RNA pairs in 118.1 ms