Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 RNU6-1031P-201ENST00000384773 107 ntBASIC0.13□□□□□ -2.39
USP54Q70EL1 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC0.13□□□□□ -2.39
USP54Q70EL1 AC092802.2-202ENST00000444665 371 ntTSL 5 BASIC0.13□□□□□ -2.39
USP54Q70EL1 AC007547.1-201ENST00000462177 490 ntBASIC0.13□□□□□ -2.39
USP54Q70EL1 SNRPGP7-201ENST00000469016 106 ntBASIC0.13□□□□□ -2.39
USP54Q70EL1 RNU6-856P-201ENST00000516959 98 ntBASIC0.13□□□□□ -2.39
USP54Q70EL1 AC011979.2-201ENST00000527568 352 ntBASIC0.13□□□□□ -2.39
USP54Q70EL1 AC087894.1-201ENST00000538359 518 ntBASIC0.13□□□□□ -2.39
USP54Q70EL1 CTHRC1P1-201ENST00000605383 469 ntBASIC0.13□□□□□ -2.39
USP54Q70EL1 AC245297.2-201ENST00000610119 565 ntBASIC0.13□□□□□ -2.39
USP54Q70EL1 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC0.12□□□□□ -2.39
USP54Q70EL1 IL2-201ENST00000226730 1029 ntAPPRIS P1 TSL 1 (best) BASIC0.12□□□□□ -2.39
USP54Q70EL1 RNU6-562P-201ENST00000362731 107 ntBASIC0.12□□□□□ -2.39
USP54Q70EL1 SNORD116-13-201ENST00000384408 92 ntBASIC0.12□□□□□ -2.39
USP54Q70EL1 Y_RNA.549-201ENST00000384657 102 ntBASIC0.12□□□□□ -2.39
USP54Q70EL1 SNORA40.2-201ENST00000390847 128 ntBASIC0.12□□□□□ -2.39
USP54Q70EL1 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC0.12□□□□□ -2.39
USP54Q70EL1 MIR300-201ENST00000401138 83 ntBASIC0.12□□□□□ -2.39
USP54Q70EL1 AL355796.1-201ENST00000406706 323 ntBASIC0.12□□□□□ -2.39
USP54Q70EL1 AC137499.1-201ENST00000427602 88 ntBASIC0.12□□□□□ -2.39
USP54Q70EL1 AC010975.2-201ENST00000427781 588 ntBASIC0.12□□□□□ -2.39
USP54Q70EL1 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC0.12□□□□□ -2.39
USP54Q70EL1 CYCTP-201ENST00000504253 315 ntBASIC0.12□□□□□ -2.39
USP54Q70EL1 AC104663.1-201ENST00000508555 557 ntTSL 2 BASIC0.12□□□□□ -2.39
USP54Q70EL1 AC093206.1-201ENST00000515364 497 ntTSL 3 BASIC0.12□□□□□ -2.39
USP54Q70EL1 EIF1P4-201ENST00000572664 335 ntBASIC0.12□□□□□ -2.39
USP54Q70EL1 MIR548AC-201ENST00000585049 88 ntBASIC0.12□□□□□ -2.39
USP54Q70EL1 LINC02104-202ENST00000604954 599 ntTSL 3 BASIC0.12□□□□□ -2.39
USP54Q70EL1 AC144521.1-201ENST00000607148 956 ntBASIC0.12□□□□□ -2.39
USP54Q70EL1 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.11□□□□□ -2.39
USP54Q70EL1 U3.4-201ENST00000363352 213 ntBASIC0.11□□□□□ -2.39
USP54Q70EL1 RNU6-440P-201ENST00000390882 105 ntBASIC0.11□□□□□ -2.39
USP54Q70EL1 RNA5SP504-201ENST00000410676 117 ntBASIC0.11□□□□□ -2.39
USP54Q70EL1 Z99497.1-201ENST00000421282 135 ntBASIC0.11□□□□□ -2.39
USP54Q70EL1 AL035398.1-201ENST00000430869 322 ntBASIC0.11□□□□□ -2.39
USP54Q70EL1 MTND4P15-201ENST00000437913 1033 ntBASIC0.11□□□□□ -2.39
USP54Q70EL1 AC012445.1-201ENST00000442831 607 ntTSL 3 BASIC0.11□□□□□ -2.39
USP54Q70EL1 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC0.11□□□□□ -2.39
USP54Q70EL1 AC007327.1-201ENST00000447461 264 ntBASIC0.11□□□□□ -2.39
USP54Q70EL1 LINC01399-202ENST00000458450 244 ntBASIC0.11□□□□□ -2.39
USP54Q70EL1 SRRM1P2-201ENST00000464531 1192 ntBASIC0.11□□□□□ -2.39
USP54Q70EL1 AC026616.1-201ENST00000523157 525 ntBASIC0.11□□□□□ -2.39
USP54Q70EL1 AP002001.1-203ENST00000534002 267 ntBASIC0.11□□□□□ -2.39
USP54Q70EL1 MIR4768-201ENST00000585270 74 ntBASIC0.11□□□□□ -2.39
USP54Q70EL1 AL596327.1-201ENST00000603629 213 ntBASIC0.11□□□□□ -2.39
USP54Q70EL1 AC121334.2-201ENST00000605387 271 ntBASIC0.11□□□□□ -2.39
USP54Q70EL1 AC131159.1-201ENST00000621854 213 ntBASIC0.11□□□□□ -2.39
USP54Q70EL1 MIR411-201ENST00000362239 96 ntBASIC0.11□□□□□ -2.39
USP54Q70EL1 snoU2-30.2-201ENST00000362805 70 ntBASIC0.11□□□□□ -2.39
USP54Q70EL1 MIR329-1-201ENST00000385028 80 ntBASIC0.11□□□□□ -2.39
USP54Q70EL1 STAG3L5P-204ENST00000443759 179 ntBASIC0.11□□□□□ -2.39
USP54Q70EL1 AC104692.1-201ENST00000472406 90 ntBASIC0.11□□□□□ -2.39
USP54Q70EL1 AC112206.4-201ENST00000515142 405 ntBASIC0.11□□□□□ -2.39
USP54Q70EL1 RNU1-86P-201ENST00000516108 154 ntBASIC0.11□□□□□ -2.39
USP54Q70EL1 RNU2-34P-201ENST00000516534 121 ntBASIC0.11□□□□□ -2.39
USP54Q70EL1 RNU1-107P-201ENST00000516617 154 ntBASIC0.11□□□□□ -2.39
USP54Q70EL1 RNU6-922P-201ENST00000516753 99 ntBASIC0.11□□□□□ -2.39
USP54Q70EL1 RNU6-201P-201ENST00000517100 61 ntBASIC0.11□□□□□ -2.39
USP54Q70EL1 AC106038.2-201ENST00000520706 568 ntBASIC0.11□□□□□ -2.39
USP54Q70EL1 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC0.11□□□□□ -2.39
USP54Q70EL1 MIR5695-201ENST00000579717 85 ntBASIC0.11□□□□□ -2.39
USP54Q70EL1 AC005520.5-201ENST00000613926 164 ntBASIC0.11□□□□□ -2.39
USP54Q70EL1 MIR8054-201ENST00000620877 86 ntBASIC0.11□□□□□ -2.39
USP54Q70EL1 SATB1-AS1-227ENST00000625533 743 ntTSL 5 BASIC0.11□□□□□ -2.39
USP54Q70EL1 RNU6-945P-201ENST00000383947 107 ntBASIC0.1□□□□□ -2.39
USP54Q70EL1 RNA5SP323-201ENST00000391094 133 ntBASIC0.1□□□□□ -2.39
USP54Q70EL1 AL451046.2-201ENST00000403074 277 ntBASIC0.1□□□□□ -2.39
USP54Q70EL1 RNU2-3P-201ENST00000410144 191 ntBASIC0.1□□□□□ -2.39
USP54Q70EL1 AL590135.1-201ENST00000422215 156 ntBASIC0.1□□□□□ -2.39
USP54Q70EL1 AC019205.3-201ENST00000424573 156 ntBASIC0.1□□□□□ -2.39
USP54Q70EL1 AC244098.3-201ENST00000424803 96 ntBASIC0.1□□□□□ -2.39
USP54Q70EL1 TRIM60P10Y-201ENST00000425589 751 ntBASIC0.1□□□□□ -2.39
USP54Q70EL1 AL353747.2-201ENST00000439207 205 ntTSL 3 BASIC0.1□□□□□ -2.39
USP54Q70EL1 AC016700.2-201ENST00000446011 156 ntBASIC0.1□□□□□ -2.39
USP54Q70EL1 AL358075.2-201ENST00000452785 339 ntTSL 2 BASIC0.1□□□□□ -2.39
USP54Q70EL1 AP000797.1-201ENST00000478870 387 ntBASIC0.1□□□□□ -2.39
USP54Q70EL1 AC015911.1-201ENST00000495111 156 ntBASIC0.1□□□□□ -2.39
USP54Q70EL1 AC068587.4-201ENST00000533893 186 ntBASIC0.1□□□□□ -2.39
USP54Q70EL1 AC109810.1-201ENST00000534066 224 ntBASIC0.1□□□□□ -2.39
USP54Q70EL1 AC005776.1-201ENST00000603164 290 ntBASIC0.1□□□□□ -2.39
USP54Q70EL1 Z98751.3-201ENST00000604447 521 ntBASIC0.1□□□□□ -2.39
USP54Q70EL1 AL139286.2-201ENST00000606838 396 ntBASIC0.1□□□□□ -2.39
USP54Q70EL1 AL354696.1-201ENST00000614652 497 ntBASIC0.1□□□□□ -2.39
USP54Q70EL1 MTND4P5-201ENST00000435821 1374 ntBASIC0.1□□□□□ -2.39
USP54Q70EL1 RNU6-349P-201ENST00000362402 107 ntBASIC0.09□□□□□ -2.39
USP54Q70EL1 MIR578-201ENST00000384828 96 ntBASIC0.09□□□□□ -2.39
USP54Q70EL1 CoTC_ribozyme.1-201ENST00000408104 192 ntBASIC0.09□□□□□ -2.39
USP54Q70EL1 MIR1253-201ENST00000408273 105 ntBASIC0.09□□□□□ -2.39
USP54Q70EL1 RPL22P18-201ENST00000417197 377 ntBASIC0.09□□□□□ -2.39
USP54Q70EL1 AL158013.1-202ENST00000419666 520 ntTSL 5 BASIC0.09□□□□□ -2.39
USP54Q70EL1 AL353777.1-201ENST00000425552 326 ntBASIC0.09□□□□□ -2.39
USP54Q70EL1 AL731563.2-201ENST00000431293 291 ntTSL 5 BASIC0.09□□□□□ -2.39
USP54Q70EL1 LINC00354-202ENST00000440860 376 ntTSL 2 BASIC0.09□□□□□ -2.39
USP54Q70EL1 NFU1P2-201ENST00000448700 469 ntBASIC0.09□□□□□ -2.39
USP54Q70EL1 MTND3P25-201ENST00000509243 135 ntBASIC0.09□□□□□ -2.39
USP54Q70EL1 AC107934.1-201ENST00000522215 217 ntBASIC0.09□□□□□ -2.39
USP54Q70EL1 AC112481.1-201ENST00000549669 901 ntTSL 2 BASIC0.09□□□□□ -2.39
USP54Q70EL1 MIR4305-201ENST00000583252 102 ntBASIC0.09□□□□□ -2.39
USP54Q70EL1 AC008507.2-201ENST00000588402 1176 ntBASIC0.09□□□□□ -2.39
USP54Q70EL1 AC017083.3-201ENST00000609955 700 ntBASIC0.09□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 105.1 ms