Protein–RNA interactions for Protein: Q6P9F5

TRIM40, Tripartite motif-containing protein 40, humanhuman

Predictions only

Length 258 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40Q6P9F5 MTND5P26-201ENST00000426018 1752 ntBASIC1.33□□□□□ -2.2
TRIM40Q6P9F5 ZNF260-203ENST00000588993 4174 ntAPPRIS P1 TSL 1 (best) BASIC1.33□□□□□ -2.2
TRIM40Q6P9F5 WWP1P1-201ENST00000466609 2769 ntBASIC1.32□□□□□ -2.2
TRIM40Q6P9F5 RNU6-562P-201ENST00000362731 107 ntBASIC1.32□□□□□ -2.2
TRIM40Q6P9F5 RNU5B-2P-201ENST00000363036 113 ntBASIC1.32□□□□□ -2.2
TRIM40Q6P9F5 TRAV40-201ENST00000390467 317 ntAPPRIS P1 BASIC1.32□□□□□ -2.2
TRIM40Q6P9F5 RNU6-955P-201ENST00000410497 104 ntBASIC1.32□□□□□ -2.2
TRIM40Q6P9F5 RPS26P42-201ENST00000413485 326 ntBASIC1.32□□□□□ -2.2
TRIM40Q6P9F5 AP1B1P2-201ENST00000416196 106 ntBASIC1.32□□□□□ -2.2
TRIM40Q6P9F5 ARL5AP1-201ENST00000418991 388 ntBASIC1.32□□□□□ -2.2
TRIM40Q6P9F5 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC1.32□□□□□ -2.2
TRIM40Q6P9F5 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC1.32□□□□□ -2.2
TRIM40Q6P9F5 AC099677.2-201ENST00000436385 175 ntBASIC1.32□□□□□ -2.2
TRIM40Q6P9F5 UBE2V1P8-201ENST00000437166 265 ntBASIC1.32□□□□□ -2.2
TRIM40Q6P9F5 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC1.32□□□□□ -2.2
TRIM40Q6P9F5 AC005908.1-201ENST00000468701 347 ntBASIC1.32□□□□□ -2.2
TRIM40Q6P9F5 AC114801.2-201ENST00000503825 781 ntBASIC1.32□□□□□ -2.2
TRIM40Q6P9F5 RNU6-835P-201ENST00000516974 104 ntBASIC1.32□□□□□ -2.2
TRIM40Q6P9F5 AL157687.1-201ENST00000554853 619 ntBASIC1.32□□□□□ -2.2
TRIM40Q6P9F5 DNAJC19P9-201ENST00000555084 351 ntBASIC1.32□□□□□ -2.2
TRIM40Q6P9F5 AC069114.2-201ENST00000604699 304 ntBASIC1.32□□□□□ -2.2
TRIM40Q6P9F5 CTHRC1P1-201ENST00000605383 469 ntBASIC1.32□□□□□ -2.2
TRIM40Q6P9F5 ST7-OT4_1.1-201ENST00000615322 200 ntBASIC1.32□□□□□ -2.2
TRIM40Q6P9F5 NCRUPAR_2.1-201ENST00000616308 99 ntBASIC1.32□□□□□ -2.2
TRIM40Q6P9F5 FER-210ENST00000628534 558 ntTSL 5 BASIC1.32□□□□□ -2.2
TRIM40Q6P9F5 MIR6863-201ENST00000636112 90 ntBASIC1.32□□□□□ -2.2
TRIM40Q6P9F5 AC068205.3-201ENST00000636385 468 ntBASIC1.32□□□□□ -2.2
TRIM40Q6P9F5 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.32□□□□□ -2.2
TRIM40Q6P9F5 RNU6-545P-201ENST00000362681 104 ntBASIC1.31□□□□□ -2.2
TRIM40Q6P9F5 Y_RNA.167-201ENST00000363735 109 ntBASIC1.31□□□□□ -2.2
TRIM40Q6P9F5 RNU6-1286P-201ENST00000383871 107 ntBASIC1.31□□□□□ -2.2
TRIM40Q6P9F5 MIR514A2-201ENST00000385131 88 ntBASIC1.31□□□□□ -2.2
TRIM40Q6P9F5 MIR514A3-201ENST00000385132 88 ntBASIC1.31□□□□□ -2.2
TRIM40Q6P9F5 DEFB110-202ENST00000393660 189 ntAPPRIS ALT2 TSL 1 (best) BASIC1.31□□□□□ -2.2
TRIM40Q6P9F5 MIR300-201ENST00000401138 83 ntBASIC1.31□□□□□ -2.2
TRIM40Q6P9F5 RNU6-648P-201ENST00000410190 107 ntBASIC1.31□□□□□ -2.2
TRIM40Q6P9F5 RN7SKP51-201ENST00000410781 304 ntBASIC1.31□□□□□ -2.2
TRIM40Q6P9F5 AC079150.1-201ENST00000413043 383 ntTSL 3 BASIC1.31□□□□□ -2.2
TRIM40Q6P9F5 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.31□□□□□ -2.2
TRIM40Q6P9F5 AL365258.1-201ENST00000440885 247 ntTSL 3 BASIC1.31□□□□□ -2.2
TRIM40Q6P9F5 MTND3P16-201ENST00000452205 344 ntBASIC1.31□□□□□ -2.2
TRIM40Q6P9F5 RNU7-95P-201ENST00000459222 64 ntBASIC1.31□□□□□ -2.2
TRIM40Q6P9F5 SRRM1P2-201ENST00000464531 1192 ntBASIC1.31□□□□□ -2.2
TRIM40Q6P9F5 RNA5SP61-201ENST00000516453 100 ntBASIC1.31□□□□□ -2.2
TRIM40Q6P9F5 RNU6-856P-201ENST00000516959 98 ntBASIC1.31□□□□□ -2.2
TRIM40Q6P9F5 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.31□□□□□ -2.2
TRIM40Q6P9F5 IGLVVI-22-1-201ENST00000521183 211 ntBASIC1.31□□□□□ -2.2
TRIM40Q6P9F5 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC1.31□□□□□ -2.2
TRIM40Q6P9F5 AC026470.2-201ENST00000561492 181 ntBASIC1.31□□□□□ -2.2
TRIM40Q6P9F5 AC245008.1-201ENST00000608123 476 ntBASIC1.31□□□□□ -2.2
TRIM40Q6P9F5 MIR7974-201ENST00000615835 79 ntBASIC1.31□□□□□ -2.2
TRIM40Q6P9F5 AC005562.2-201ENST00000618264 111 ntBASIC1.31□□□□□ -2.2
TRIM40Q6P9F5 AC073534.2-201ENST00000620377 381 ntBASIC1.31□□□□□ -2.2
TRIM40Q6P9F5 RNU6-862P-201ENST00000362804 105 ntBASIC1.3□□□□□ -2.2
TRIM40Q6P9F5 Y_RNA.123-201ENST00000363338 102 ntBASIC1.3□□□□□ -2.2
TRIM40Q6P9F5 RNU6-1085P-201ENST00000363576 107 ntBASIC1.3□□□□□ -2.2
TRIM40Q6P9F5 RNU6-414P-201ENST00000363705 104 ntBASIC1.3□□□□□ -2.2
TRIM40Q6P9F5 RNU6-877P-201ENST00000383868 107 ntBASIC1.3□□□□□ -2.2
TRIM40Q6P9F5 RNU6-259P-201ENST00000383999 107 ntBASIC1.3□□□□□ -2.2
TRIM40Q6P9F5 RNU6-203P-201ENST00000384038 104 ntBASIC1.3□□□□□ -2.2
TRIM40Q6P9F5 MIR520A-201ENST00000384862 85 ntBASIC1.3□□□□□ -2.2
TRIM40Q6P9F5 MIR758-201ENST00000390227 88 ntBASIC1.3□□□□□ -2.2
TRIM40Q6P9F5 EIF4E2P1-201ENST00000393781 255 ntBASIC1.3□□□□□ -2.2
TRIM40Q6P9F5 MIR1283-1-201ENST00000408494 87 ntBASIC1.3□□□□□ -2.2
TRIM40Q6P9F5 Y_RNA.595-201ENST00000410403 105 ntBASIC1.3□□□□□ -2.2
TRIM40Q6P9F5 RNU2-66P-201ENST00000410650 161 ntBASIC1.3□□□□□ -2.2
TRIM40Q6P9F5 RNA5SP494-201ENST00000410653 129 ntBASIC1.3□□□□□ -2.2
TRIM40Q6P9F5 AC245047.4-201ENST00000433189 144 ntBASIC1.3□□□□□ -2.2
TRIM40Q6P9F5 AL603839.2-201ENST00000437060 546 ntTSL 5 BASIC1.3□□□□□ -2.2
TRIM40Q6P9F5 snoU13.9-201ENST00000458927 103 ntBASIC1.3□□□□□ -2.2
TRIM40Q6P9F5 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC1.3□□□□□ -2.2
TRIM40Q6P9F5 HMGN1P13-201ENST00000505795 138 ntBASIC1.3□□□□□ -2.2
TRIM40Q6P9F5 AC092436.3-201ENST00000511788 257 ntBASIC1.3□□□□□ -2.2
TRIM40Q6P9F5 AC067942.3-201ENST00000512025 362 ntBASIC1.3□□□□□ -2.2
TRIM40Q6P9F5 ZNF436-AS1-205ENST00000518600 376 ntTSL 5 BASIC1.3□□□□□ -2.2
TRIM40Q6P9F5 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC1.3□□□□□ -2.2
TRIM40Q6P9F5 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC1.3□□□□□ -2.2
TRIM40Q6P9F5 HMGB1P33-201ENST00000563485 527 ntBASIC1.3□□□□□ -2.2
TRIM40Q6P9F5 AP005136.1-201ENST00000579765 429 ntBASIC1.3□□□□□ -2.2
TRIM40Q6P9F5 AC016727.2-201ENST00000603988 621 ntBASIC1.3□□□□□ -2.2
TRIM40Q6P9F5 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC1.3□□□□□ -2.2
TRIM40Q6P9F5 AL158209.2-201ENST00000619266 216 ntBASIC1.3□□□□□ -2.2
TRIM40Q6P9F5 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC1.3□□□□□ -2.2
TRIM40Q6P9F5 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.3□□□□□ -2.2
TRIM40Q6P9F5 AC097520.1-201ENST00000624435 385 ntBASIC1.3□□□□□ -2.2
TRIM40Q6P9F5 AC121333.1-201ENST00000567488 2709 ntBASIC1.3□□□□□ -2.2
TRIM40Q6P9F5 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC1.29□□□□□ -2.2
TRIM40Q6P9F5 RNU6-214P-201ENST00000384130 107 ntBASIC1.29□□□□□ -2.2
TRIM40Q6P9F5 MTCO3P40-201ENST00000392516 676 ntBASIC1.29□□□□□ -2.2
TRIM40Q6P9F5 AC008440.2-201ENST00000413496 423 ntTSL 5 BASIC1.29□□□□□ -2.2
TRIM40Q6P9F5 AL136985.1-201ENST00000424592 395 ntTSL 3 BASIC1.29□□□□□ -2.2
TRIM40Q6P9F5 MRPS10P2-201ENST00000431226 381 ntBASIC1.29□□□□□ -2.2
TRIM40Q6P9F5 AC091435.1-201ENST00000505442 584 ntBASIC1.29□□□□□ -2.2
TRIM40Q6P9F5 RNU2-34P-201ENST00000516534 121 ntBASIC1.29□□□□□ -2.2
TRIM40Q6P9F5 AC011092.2-201ENST00000533659 586 ntTSL 1 (best) BASIC1.29□□□□□ -2.2
TRIM40Q6P9F5 LINC01495-202ENST00000534135 343 ntTSL 2 BASIC1.29□□□□□ -2.2
TRIM40Q6P9F5 SNORA59B-202ENST00000578183 701 ntBASIC1.29□□□□□ -2.2
TRIM40Q6P9F5 FGF7P1-201ENST00000582820 288 ntBASIC1.29□□□□□ -2.2
TRIM40Q6P9F5 AC124864.2-201ENST00000624736 186 ntBASIC1.29□□□□□ -2.2
TRIM40Q6P9F5 MPP6-209ENST00000625307 126 ntTSL 5 BASIC1.29□□□□□ -2.2
Retrieved 100 of 98,524 protein–RNA pairs in 161.1 ms