Protein–RNA interactions for Protein: Q3L8U1

CHD9, Chromodomain-helicase-DNA-binding protein 9, humanhuman

Predictions only

Length 2,897 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9Q3L8U1 MTCO1P27-201ENST00000448269 226 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 AL157400.4-201ENST00000455699 667 ntTSL 1 (best) BASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 SRRM1P2-201ENST00000464531 1192 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 AC104563.1-201ENST00000476147 376 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 AC104629.1-201ENST00000494226 508 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 AC108517.1-201ENST00000512546 327 ntTSL 3 BASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 AC024995.1-201ENST00000523014 93 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 AL445074.1-201ENST00000555362 318 ntTSL 2 BASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 AC092325.1-201ENST00000566449 554 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 MIR4290-201ENST00000583807 95 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 AC104985.3-201ENST00000623479 597 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 RNU5A-8P-201ENST00000364102 114 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 Y_RNA.551-201ENST00000384661 102 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 MIR544A-201ENST00000384855 91 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 RNA5SP111-201ENST00000411386 101 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 AL663023.1-201ENST00000412932 853 ntTSL 3 BASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 CDK8P2-201ENST00000415020 547 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 MTCO2P12-201ENST00000427426 682 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 AL355997.1-202ENST00000454361 610 ntTSL 3 BASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 AC022364.2-201ENST00000457963 554 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 U8.21-201ENST00000459536 136 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 AP000797.1-201ENST00000478870 387 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 AHI1-208ENST00000488690 712 ntTSL 5 BASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 AC010587.2-201ENST00000511727 448 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 TPRKBP2-201ENST00000565969 475 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 AL512347.1-201ENST00000566420 503 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 AL162424.1-201ENST00000602325 221 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 AL034555.1-201ENST00000604816 211 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 PART1_2.1-201ENST00000612397 250 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 AC008147.4-201ENST00000617570 1204 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 OR5AK4P-201ENST00000635912 903 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 Y_RNA.33-201ENST00000362591 102 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 Y_RNA.256-201ENST00000364594 104 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 Y_RNA.330-201ENST00000365230 109 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 RNU6-994P-201ENST00000410507 111 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 Y_RNA.616-201ENST00000410835 95 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 ATP6V0E1P1-201ENST00000412537 226 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 HMGN2P34-201ENST00000437647 269 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 MTATP6P23-201ENST00000440153 476 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 EEF1A1P39-201ENST00000440791 250 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 RPL39P39-201ENST00000455840 151 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 AC093534.1-201ENST00000504977 132 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 LINC02267-202ENST00000522173 799 ntTSL 3 BASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 AC109810.1-201ENST00000534066 224 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 AC025423.5-201ENST00000550230 219 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 AC099811.4-201ENST00000592536 496 ntTSL 2 BASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 AC063943.3-201ENST00000615562 356 ntBASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC-0.04□□□□□ -2.42
CHD9Q3L8U1 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC-0.05□□□□□ -2.42
CHD9Q3L8U1 SNORA32.2-201ENST00000384049 122 ntBASIC-0.05□□□□□ -2.42
CHD9Q3L8U1 SNORA12.2-201ENST00000391040 156 ntBASIC-0.05□□□□□ -2.42
CHD9Q3L8U1 AL049545.1-201ENST00000401856 572 ntBASIC-0.05□□□□□ -2.42
CHD9Q3L8U1 AL354692.1-201ENST00000423044 315 ntBASIC-0.05□□□□□ -2.42
CHD9Q3L8U1 AC092264.1-201ENST00000456002 713 ntTSL 5 BASIC-0.05□□□□□ -2.42
CHD9Q3L8U1 MTND3P5-201ENST00000512798 333 ntBASIC-0.05□□□□□ -2.42
CHD9Q3L8U1 AC007751.1-201ENST00000529260 376 ntBASIC-0.05□□□□□ -2.42
CHD9Q3L8U1 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC-0.05□□□□□ -2.42
CHD9Q3L8U1 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC-0.05□□□□□ -2.42
CHD9Q3L8U1 MIR3923-201ENST00000579521 83 ntBASIC-0.05□□□□□ -2.42
CHD9Q3L8U1 MIR4441-201ENST00000582623 100 ntBASIC-0.05□□□□□ -2.42
CHD9Q3L8U1 MIR4293-201ENST00000584305 78 ntBASIC-0.05□□□□□ -2.42
CHD9Q3L8U1 LINC01899-203ENST00000584810 337 ntTSL 2 BASIC-0.05□□□□□ -2.42
CHD9Q3L8U1 AC080078.2-201ENST00000603766 501 ntBASIC-0.05□□□□□ -2.42
CHD9Q3L8U1 AP000484.1-201ENST00000620067 1252 ntBASIC-0.05□□□□□ -2.42
CHD9Q3L8U1 BX322639.1-202ENST00000423987 2213 ntBASIC-0.05□□□□□ -2.42
CHD9Q3L8U1 MIR340-201ENST00000362125 95 ntBASIC-0.05□□□□□ -2.42
CHD9Q3L8U1 C20orf187-201ENST00000378252 446 ntTSL 2 BASIC-0.05□□□□□ -2.42
CHD9Q3L8U1 Y_RNA.490-201ENST00000384413 102 ntBASIC-0.05□□□□□ -2.42
CHD9Q3L8U1 MIR635-201ENST00000384830 98 ntBASIC-0.05□□□□□ -2.42
CHD9Q3L8U1 RPS23P5-201ENST00000495419 428 ntBASIC-0.05□□□□□ -2.42
CHD9Q3L8U1 SEMA6A-AS1-204ENST00000510682 521 ntTSL 5 BASIC-0.05□□□□□ -2.42
CHD9Q3L8U1 AC115990.1-201ENST00000526957 301 ntBASIC-0.05□□□□□ -2.42
CHD9Q3L8U1 MIR3681-201ENST00000580089 72 ntBASIC-0.05□□□□□ -2.42
CHD9Q3L8U1 AC092070.3-201ENST00000596041 337 ntTSL 3 BASIC-0.05□□□□□ -2.42
CHD9Q3L8U1 AL606834.3-201ENST00000602615 496 ntBASIC-0.05□□□□□ -2.42
CHD9Q3L8U1 U4.7-201ENST00000638126 106 ntBASIC-0.05□□□□□ -2.42
CHD9Q3L8U1 RNY4P27-201ENST00000363341 96 ntBASIC-0.06□□□□□ -2.42
CHD9Q3L8U1 SNORD115-41-201ENST00000363608 82 ntBASIC-0.06□□□□□ -2.42
CHD9Q3L8U1 Y_RNA.246-201ENST00000364495 108 ntBASIC-0.06□□□□□ -2.42
CHD9Q3L8U1 RNU6-929P-201ENST00000384429 107 ntBASIC-0.06□□□□□ -2.42
CHD9Q3L8U1 SNORA26.3-201ENST00000391119 136 ntBASIC-0.06□□□□□ -2.42
CHD9Q3L8U1 LINC00397-201ENST00000422074 344 ntTSL 3 BASIC-0.06□□□□□ -2.42
CHD9Q3L8U1 COX7BP2-201ENST00000437976 242 ntBASIC-0.06□□□□□ -2.42
CHD9Q3L8U1 MTND2P20-201ENST00000440805 661 ntBASIC-0.06□□□□□ -2.42
CHD9Q3L8U1 AC006026.2-201ENST00000457376 180 ntBASIC-0.06□□□□□ -2.42
CHD9Q3L8U1 AC010469.2-201ENST00000496412 480 ntBASIC-0.06□□□□□ -2.42
CHD9Q3L8U1 AC010468.3-201ENST00000508225 458 ntBASIC-0.06□□□□□ -2.42
CHD9Q3L8U1 MTCO3P42-201ENST00000509488 518 ntBASIC-0.06□□□□□ -2.42
CHD9Q3L8U1 MTCO3P39-201ENST00000514812 518 ntBASIC-0.06□□□□□ -2.42
CHD9Q3L8U1 SNORA31.3-201ENST00000516029 96 ntBASIC-0.06□□□□□ -2.42
CHD9Q3L8U1 AC021451.1-201ENST00000523498 1129 ntBASIC-0.06□□□□□ -2.42
CHD9Q3L8U1 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC-0.06□□□□□ -2.42
CHD9Q3L8U1 AC087685.1-201ENST00000587507 141 ntBASIC-0.06□□□□□ -2.42
CHD9Q3L8U1 TUG1_2.1-201ENST00000614234 87 ntBASIC-0.06□□□□□ -2.42
CHD9Q3L8U1 DLG2-AS1_1.1-201ENST00000622319 213 ntBASIC-0.06□□□□□ -2.42
CHD9Q3L8U1 SNORD115-48-201ENST00000364764 76 ntBASIC-0.06□□□□□ -2.42
CHD9Q3L8U1 SNORA80D-201ENST00000384488 135 ntBASIC-0.06□□□□□ -2.42
CHD9Q3L8U1 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC-0.06□□□□□ -2.42
CHD9Q3L8U1 ZNF705D-201ENST00000400078 925 ntAPPRIS P1 TSL 2 BASIC-0.06□□□□□ -2.42
CHD9Q3L8U1 RNU2-39P-201ENST00000410604 198 ntBASIC-0.06□□□□□ -2.42
Retrieved 100 of 98,524 protein–RNA pairs in 103.1 ms