Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SAMD9L-201ENST00000318238 7134 ntAPPRIS P1 TSL 1 (best) BASIC2.36□□□□□ -2.03
COL28A1Q2UY09 OXR1-209ENST00000517566 4501 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
COL28A1Q2UY09 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.36□□□□□ -2.03
COL28A1Q2UY09 Y_RNA.796-201ENST00000364268 102 ntBASIC2.36□□□□□ -2.03
COL28A1Q2UY09 Y_RNA.799-201ENST00000364992 102 ntBASIC2.36□□□□□ -2.03
COL28A1Q2UY09 RNU6-546P-201ENST00000383991 107 ntBASIC2.36□□□□□ -2.03
COL28A1Q2UY09 U8.10-201ENST00000384260 133 ntBASIC2.36□□□□□ -2.03
COL28A1Q2UY09 SNORD116-29-201ENST00000384516 83 ntBASIC2.36□□□□□ -2.03
COL28A1Q2UY09 RNU6-310P-201ENST00000384655 107 ntBASIC2.36□□□□□ -2.03
COL28A1Q2UY09 SNORA80E-201ENST00000384744 137 ntBASIC2.36□□□□□ -2.03
COL28A1Q2UY09 RNY4P36-201ENST00000391116 96 ntBASIC2.36□□□□□ -2.03
COL28A1Q2UY09 SNORA75.6-201ENST00000391318 127 ntBASIC2.36□□□□□ -2.03
COL28A1Q2UY09 MS4A4E-203ENST00000425663 350 ntTSL 1 (best) BASIC2.36□□□□□ -2.03
COL28A1Q2UY09 snoU13.30-201ENST00000458951 104 ntBASIC2.36□□□□□ -2.03
COL28A1Q2UY09 Y_RNA.653-201ENST00000459091 95 ntBASIC2.36□□□□□ -2.03
COL28A1Q2UY09 Y_RNA.632-201ENST00000459189 102 ntBASIC2.36□□□□□ -2.03
COL28A1Q2UY09 AC007215.1-201ENST00000464893 276 ntBASIC2.36□□□□□ -2.03
COL28A1Q2UY09 AC018868.1-201ENST00000491307 315 ntBASIC2.36□□□□□ -2.03
COL28A1Q2UY09 RNA5SP281-201ENST00000516504 135 ntBASIC2.36□□□□□ -2.03
COL28A1Q2UY09 RNA5SP384-201ENST00000516615 116 ntBASIC2.36□□□□□ -2.03
COL28A1Q2UY09 Y_RNA.718-201ENST00000517110 102 ntBASIC2.36□□□□□ -2.03
COL28A1Q2UY09 C8orf59P2-201ENST00000603441 271 ntBASIC2.36□□□□□ -2.03
COL28A1Q2UY09 AL137847.3-201ENST00000611521 109 ntBASIC2.36□□□□□ -2.03
COL28A1Q2UY09 MIR6873-201ENST00000622788 63 ntBASIC2.36□□□□□ -2.03
COL28A1Q2UY09 KTN1-203ENST00000395309 4021 ntAPPRIS ALT2 TSL 5 BASIC2.36□□□□□ -2.03
COL28A1Q2UY09 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC2.35□□□□□ -2.03
COL28A1Q2UY09 SNORA38-201ENST00000363946 132 ntBASIC2.35□□□□□ -2.03
COL28A1Q2UY09 RNU6-17P-201ENST00000384245 107 ntBASIC2.35□□□□□ -2.03
COL28A1Q2UY09 RNU6-18P-201ENST00000384527 107 ntBASIC2.35□□□□□ -2.03
COL28A1Q2UY09 TRDJ2-201ENST00000390475 54 ntAPPRIS P1 BASIC2.35□□□□□ -2.03
COL28A1Q2UY09 RNA5SP213-201ENST00000391031 106 ntBASIC2.35□□□□□ -2.03
COL28A1Q2UY09 RNU2-48P-201ENST00000410694 191 ntBASIC2.35□□□□□ -2.03
COL28A1Q2UY09 Y_RNA.646-201ENST00000410980 101 ntBASIC2.35□□□□□ -2.03
COL28A1Q2UY09 MTCO2P27-201ENST00000420740 428 ntBASIC2.35□□□□□ -2.03
COL28A1Q2UY09 AC236972.2-201ENST00000434979 310 ntBASIC2.35□□□□□ -2.03
COL28A1Q2UY09 RPS12P2-201ENST00000439728 269 ntBASIC2.35□□□□□ -2.03
COL28A1Q2UY09 snoU13.6-201ENST00000458785 104 ntBASIC2.35□□□□□ -2.03
COL28A1Q2UY09 SNORD19B-201ENST00000459623 84 ntBASIC2.35□□□□□ -2.03
COL28A1Q2UY09 AC010255.2-201ENST00000505209 428 ntTSL 3 BASIC2.35□□□□□ -2.03
COL28A1Q2UY09 LINC02501-201ENST00000510420 426 ntTSL 2 BASIC2.35□□□□□ -2.03
COL28A1Q2UY09 AC097467.1-201ENST00000513660 370 ntTSL 5 BASIC2.35□□□□□ -2.03
COL28A1Q2UY09 RNU7-175P-201ENST00000515915 61 ntBASIC2.35□□□□□ -2.03
COL28A1Q2UY09 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC2.35□□□□□ -2.03
COL28A1Q2UY09 AC093027.1-201ENST00000546698 429 ntBASIC2.35□□□□□ -2.03
COL28A1Q2UY09 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC2.35□□□□□ -2.03
COL28A1Q2UY09 AC104985.2-201ENST00000620598 500 ntBASIC2.35□□□□□ -2.03
COL28A1Q2UY09 EYS-202ENST00000342421 2168 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
COL28A1Q2UY09 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.34□□□□□ -2.03
COL28A1Q2UY09 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC2.34□□□□□ -2.03
COL28A1Q2UY09 Y_RNA.259-201ENST00000364619 101 ntBASIC2.34□□□□□ -2.03
COL28A1Q2UY09 SNORA25B-201ENST00000365507 128 ntBASIC2.34□□□□□ -2.03
COL28A1Q2UY09 MIR153-2-201ENST00000385225 87 ntBASIC2.34□□□□□ -2.03
COL28A1Q2UY09 TRAJ26-201ENST00000390511 60 ntAPPRIS P1 BASIC2.34□□□□□ -2.03
COL28A1Q2UY09 MIR1294-201ENST00000408503 142 ntBASIC2.34□□□□□ -2.03
COL28A1Q2UY09 RNU2-32P-201ENST00000411193 191 ntBASIC2.34□□□□□ -2.03
COL28A1Q2UY09 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC2.34□□□□□ -2.03
COL28A1Q2UY09 AC009238.1-201ENST00000442165 424 ntBASIC2.34□□□□□ -2.03
COL28A1Q2UY09 AC009237.6-201ENST00000446969 424 ntBASIC2.34□□□□□ -2.03
COL28A1Q2UY09 AC074131.1-201ENST00000514662 253 ntTSL 2 BASIC2.34□□□□□ -2.03
COL28A1Q2UY09 SCARNA16.2-201ENST00000516520 172 ntBASIC2.34□□□□□ -2.03
COL28A1Q2UY09 RNU6-1198P-201ENST00000516904 67 ntBASIC2.34□□□□□ -2.03
COL28A1Q2UY09 RNA5SP54-201ENST00000516951 92 ntBASIC2.34□□□□□ -2.03
COL28A1Q2UY09 RNU6-1213P-201ENST00000517075 94 ntBASIC2.34□□□□□ -2.03
COL28A1Q2UY09 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC2.34□□□□□ -2.03
COL28A1Q2UY09 AC023442.3-201ENST00000532199 495 ntTSL 2 BASIC2.34□□□□□ -2.03
COL28A1Q2UY09 NDUFA5P6-201ENST00000542110 379 ntBASIC2.34□□□□□ -2.03
COL28A1Q2UY09 AC026470.2-201ENST00000561492 181 ntBASIC2.34□□□□□ -2.03
COL28A1Q2UY09 MIR4658-201ENST00000584344 65 ntBASIC2.34□□□□□ -2.03
COL28A1Q2UY09 AL132822.1-201ENST00000617063 513 ntBASIC2.34□□□□□ -2.03
COL28A1Q2UY09 TDRD15-202ENST00000622654 5805 ntAPPRIS P1 BASIC2.34□□□□□ -2.03
COL28A1Q2UY09 RNU4-79P-201ENST00000362764 141 ntBASIC2.33□□□□□ -2.04
COL28A1Q2UY09 Y_RNA.67-201ENST00000362870 100 ntBASIC2.33□□□□□ -2.04
COL28A1Q2UY09 RNY1P16-201ENST00000363063 111 ntBASIC2.33□□□□□ -2.04
COL28A1Q2UY09 RNU6-26P-201ENST00000383985 107 ntBASIC2.33□□□□□ -2.04
COL28A1Q2UY09 RNU6-611P-201ENST00000384276 104 ntBASIC2.33□□□□□ -2.04
COL28A1Q2UY09 Y_RNA.509-201ENST00000384506 99 ntBASIC2.33□□□□□ -2.04
COL28A1Q2UY09 RNU6-331P-201ENST00000384724 107 ntBASIC2.33□□□□□ -2.04
COL28A1Q2UY09 MIR144-201ENST00000384886 86 ntBASIC2.33□□□□□ -2.04
COL28A1Q2UY09 SNORA12.2-201ENST00000391040 156 ntBASIC2.33□□□□□ -2.04
COL28A1Q2UY09 RNU6-1093P-201ENST00000391194 107 ntBASIC2.33□□□□□ -2.04
COL28A1Q2UY09 Z82188.1-201ENST00000436709 154 ntBASIC2.33□□□□□ -2.04
COL28A1Q2UY09 RPL17P19-201ENST00000489069 552 ntBASIC2.33□□□□□ -2.04
COL28A1Q2UY09 AC034114.1-201ENST00000520293 285 ntBASIC2.33□□□□□ -2.04
COL28A1Q2UY09 AP002884.4-201ENST00000527589 594 ntTSL 3 BASIC2.33□□□□□ -2.04
COL28A1Q2UY09 LINC02293-201ENST00000548335 574 ntTSL 5 BASIC2.33□□□□□ -2.04
COL28A1Q2UY09 AC008083.3-202ENST00000552063 277 ntTSL 3 BASIC2.33□□□□□ -2.04
COL28A1Q2UY09 PRELID2P1-201ENST00000552837 301 ntBASIC2.33□□□□□ -2.04
COL28A1Q2UY09 MIR4795-201ENST00000584182 89 ntBASIC2.33□□□□□ -2.04
COL28A1Q2UY09 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC2.33□□□□□ -2.04
COL28A1Q2UY09 WARS-244ENST00000627608 123 ntTSL 5 BASIC2.33□□□□□ -2.04
COL28A1Q2UY09 MTND4LP32-201ENST00000636111 270 ntBASIC2.33□□□□□ -2.04
COL28A1Q2UY09 TAB2-201ENST00000367456 4553 ntAPPRIS P1 TSL 5 BASIC2.33□□□□□ -2.04
COL28A1Q2UY09 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.33□□□□□ -2.04
COL28A1Q2UY09 XPO4-202ENST00000400602 9884 ntAPPRIS ALT1 TSL 5 BASIC2.33□□□□□ -2.04
COL28A1Q2UY09 BX322639.1-202ENST00000423987 2213 ntBASIC2.32□□□□□ -2.04
COL28A1Q2UY09 SNORA64-201ENST00000384674 134 ntBASIC2.32□□□□□ -2.04
COL28A1Q2UY09 SNORA12-201ENST00000391162 147 ntBASIC2.32□□□□□ -2.04
COL28A1Q2UY09 RNU4ATAC16P-201ENST00000408512 126 ntBASIC2.32□□□□□ -2.04
COL28A1Q2UY09 AF228730.4-201ENST00000421457 183 ntBASIC2.32□□□□□ -2.04
COL28A1Q2UY09 MTCYBP10-201ENST00000424905 650 ntBASIC2.32□□□□□ -2.04
Retrieved 100 of 98,524 protein–RNA pairs in 218.9 ms