Protein–RNA interactions for Protein: Q01955

COL4A3, Collagen alpha-3(IV) chain, humanhuman

Predictions only

Length 1,670 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3Q01955 GABRB2-203ENST00000393959 7191 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
COL4A3Q01955 STEAP4-201ENST00000301959 2321 ntTSL 1 (best) BASIC2.98□□□□□ -1.93
COL4A3Q01955 OSTN-201ENST00000339051 402 ntAPPRIS P1 TSL 1 (best) BASIC2.98□□□□□ -1.93
COL4A3Q01955 Y_RNA.8-201ENST00000362353 102 ntBASIC2.98□□□□□ -1.93
COL4A3Q01955 Y_RNA.136-201ENST00000363444 102 ntBASIC2.98□□□□□ -1.93
COL4A3Q01955 RNA5SP189-201ENST00000364920 115 ntBASIC2.98□□□□□ -1.93
COL4A3Q01955 Y_RNA.308-201ENST00000365043 101 ntBASIC2.98□□□□□ -1.93
COL4A3Q01955 RNU6-1289P-201ENST00000384431 106 ntBASIC2.98□□□□□ -1.93
COL4A3Q01955 RNU6-918P-201ENST00000391219 106 ntBASIC2.98□□□□□ -1.93
COL4A3Q01955 MIR1287-201ENST00000408492 90 ntBASIC2.98□□□□□ -1.93
COL4A3Q01955 RNA5SP129-201ENST00000410276 118 ntBASIC2.98□□□□□ -1.93
COL4A3Q01955 AL160411.1-201ENST00000429853 400 ntTSL 2 BASIC2.98□□□□□ -1.93
COL4A3Q01955 AC244670.1-201ENST00000436879 112 ntBASIC2.98□□□□□ -1.93
COL4A3Q01955 AC021231.3-201ENST00000558497 370 ntBASIC2.98□□□□□ -1.93
COL4A3Q01955 AC010999.1-201ENST00000611856 324 ntBASIC2.98□□□□□ -1.93
COL4A3Q01955 AL590240.4-201ENST00000616908 390 ntBASIC2.98□□□□□ -1.93
COL4A3Q01955 MESTIT1_1.1-201ENST00000618871 140 ntBASIC2.98□□□□□ -1.93
COL4A3Q01955 ABCC9-206ENST00000621589 450 ntTSL 5 BASIC2.98□□□□□ -1.93
COL4A3Q01955 ATM-203ENST00000452508 12954 ntAPPRIS P1 TSL 1 (best) BASIC2.97□□□□□ -1.93
COL4A3Q01955 CNOT6L-201ENST00000504123 8843 ntAPPRIS P1 TSL 2 BASIC2.97□□□□□ -1.93
COL4A3Q01955 AL359854.1-201ENST00000614203 1594 ntBASIC2.97□□□□□ -1.93
COL4A3Q01955 MIR607-201ENST00000385241 96 ntBASIC2.97□□□□□ -1.93
COL4A3Q01955 MIR613-201ENST00000385248 95 ntBASIC2.97□□□□□ -1.93
COL4A3Q01955 RNA5SP390-201ENST00000410191 113 ntBASIC2.97□□□□□ -1.93
COL4A3Q01955 TMSB4XP3-201ENST00000445144 114 ntBASIC2.97□□□□□ -1.93
COL4A3Q01955 RPS3P1-201ENST00000456781 192 ntBASIC2.97□□□□□ -1.93
COL4A3Q01955 AP001324.2-201ENST00000461163 319 ntBASIC2.97□□□□□ -1.93
COL4A3Q01955 RPL21P104-201ENST00000464143 478 ntBASIC2.97□□□□□ -1.93
COL4A3Q01955 AC091959.1-201ENST00000495857 238 ntBASIC2.97□□□□□ -1.93
COL4A3Q01955 AC083906.5-201ENST00000503722 328 ntBASIC2.97□□□□□ -1.93
COL4A3Q01955 AC008869.1-201ENST00000510938 442 ntTSL 2 BASIC2.97□□□□□ -1.93
COL4A3Q01955 SCGB1D5P-201ENST00000515134 247 ntBASIC2.97□□□□□ -1.93
COL4A3Q01955 AC109329.2-201ENST00000519658 482 ntBASIC2.97□□□□□ -1.93
COL4A3Q01955 AL078605.1-201ENST00000603529 500 ntBASIC2.97□□□□□ -1.93
COL4A3Q01955 AC022441.3-201ENST00000605737 136 ntBASIC2.97□□□□□ -1.93
COL4A3Q01955 AC046143.2-201ENST00000609789 160 ntBASIC2.97□□□□□ -1.93
COL4A3Q01955 AC073349.3-201ENST00000617616 186 ntBASIC2.97□□□□□ -1.93
COL4A3Q01955 AC048347.1-201ENST00000624621 427 ntBASIC2.97□□□□□ -1.93
COL4A3Q01955 LMBRD1-201ENST00000370570 2099 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
COL4A3Q01955 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC2.97□□□□□ -1.93
COL4A3Q01955 CNGB3-201ENST00000320005 4347 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.93
COL4A3Q01955 MRPL42-202ENST00000393128 1983 ntAPPRIS ALT1 TSL 3 BASIC2.96□□□□□ -1.94
COL4A3Q01955 ADAM3A-203ENST00000461344 2157 ntBASIC2.96□□□□□ -1.94
COL4A3Q01955 RNU5F-3P-201ENST00000363767 117 ntBASIC2.96□□□□□ -1.94
COL4A3Q01955 RNU6-704P-201ENST00000364162 103 ntBASIC2.96□□□□□ -1.94
COL4A3Q01955 SNORA72.2-201ENST00000365028 127 ntBASIC2.96□□□□□ -1.94
COL4A3Q01955 RN7SKP61-201ENST00000410642 295 ntBASIC2.96□□□□□ -1.94
COL4A3Q01955 RNU6-394P-201ENST00000410735 107 ntBASIC2.96□□□□□ -1.94
COL4A3Q01955 RPL19P1-201ENST00000411635 428 ntBASIC2.96□□□□□ -1.94
COL4A3Q01955 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.96□□□□□ -1.94
COL4A3Q01955 MRPS10P1-201ENST00000448483 130 ntBASIC2.96□□□□□ -1.94
COL4A3Q01955 RPL30P12-201ENST00000474666 353 ntBASIC2.96□□□□□ -1.94
COL4A3Q01955 AC074133.1-201ENST00000515696 183 ntBASIC2.96□□□□□ -1.94
COL4A3Q01955 RNA5SP24-201ENST00000516478 95 ntBASIC2.96□□□□□ -1.94
COL4A3Q01955 MAPK1-204ENST00000544786 951 ntTSL 1 (best) BASIC2.96□□□□□ -1.94
COL4A3Q01955 AC141273.1-201ENST00000565300 479 ntTSL 5 BASIC2.96□□□□□ -1.94
COL4A3Q01955 AC004832.4-201ENST00000608952 331 ntBASIC2.96□□□□□ -1.94
COL4A3Q01955 LRRIQ3-204ENST00000395089 2673 ntAPPRIS P2 TSL 5 BASIC2.96□□□□□ -1.94
COL4A3Q01955 AC022336.2-201ENST00000568966 2538 ntBASIC2.96□□□□□ -1.94
COL4A3Q01955 PLS1-201ENST00000337777 3755 ntAPPRIS P1 TSL 1 (best) BASIC2.96□□□□□ -1.94
COL4A3Q01955 PP2D1-202ENST00000389050 2151 ntAPPRIS P1 TSL 5 BASIC2.96□□□□□ -1.94
COL4A3Q01955 SCN3A-209ENST00000639244 8854 ntTSL 5 BASIC2.96□□□□□ -1.94
COL4A3Q01955 AC092268.1-201ENST00000342691 405 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 Y_RNA.179-201ENST00000363844 90 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 Y_RNA.796-201ENST00000364268 102 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 Y_RNA.240-201ENST00000364469 95 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 RNU6-923P-201ENST00000364753 107 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 Y_RNA.291-201ENST00000364886 113 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 Y_RNA.799-201ENST00000364992 102 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 RNU6-805P-201ENST00000365643 106 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 Y_RNA.498-201ENST00000384460 102 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 SNORA46.1-201ENST00000391069 153 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 AC012306.1-201ENST00000423267 114 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 AC024067.1-201ENST00000426199 223 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 AC007395.1-201ENST00000451333 677 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 RPL26P9-201ENST00000457466 433 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 RPS29P20-201ENST00000489592 171 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 LNX1-AS1-202ENST00000510785 550 ntTSL 2 BASIC2.95□□□□□ -1.94
COL4A3Q01955 AC010210.1-203ENST00000513905 260 ntTSL 3 BASIC2.95□□□□□ -1.94
COL4A3Q01955 CYCSP23-201ENST00000519781 313 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 CKS1BP7-201ENST00000522230 235 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 AP005660.1-201ENST00000522972 293 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 IGKV3-31-201ENST00000523109 329 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 AC021739.1-201ENST00000559631 174 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC2.95□□□□□ -1.94
COL4A3Q01955 AC233702.2-202ENST00000562547 291 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 MIR3144-201ENST00000579460 79 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 AP001485.1-201ENST00000604799 199 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 AL359198.2-201ENST00000611836 194 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 BX322639.1-202ENST00000423987 2213 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 AC008725.1-201ENST00000605123 2263 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 MEI4-201ENST00000602452 4800 ntAPPRIS P1 TSL 5 BASIC2.95□□□□□ -1.94
COL4A3Q01955 ZNF204P-201ENST00000416749 2397 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 ZNF780B-202ENST00000434248 8665 ntAPPRIS P1 TSL 5 BASIC2.95□□□□□ -1.94
COL4A3Q01955 ZNF780B-207ENST00000617676 8664 ntAPPRIS P1 TSL 5 BASIC2.95□□□□□ -1.94
COL4A3Q01955 SIRT1-202ENST00000403579 3333 ntTSL 1 (best) BASIC2.95□□□□□ -1.94
COL4A3Q01955 AC092593.1-201ENST00000515413 1815 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 SNORA31-201ENST00000362607 130 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 U8.2-201ENST00000363156 134 ntBASIC2.95□□□□□ -1.94
COL4A3Q01955 RNU6-873P-201ENST00000363833 107 ntBASIC2.95□□□□□ -1.94
Retrieved 100 of 98,524 protein–RNA pairs in 100 ms