Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC0.98□□□□□ -2.25
FOXA1P55317 EBAG9P1-201ENST00000418955 543 ntBASIC0.98□□□□□ -2.25
FOXA1P55317 AL360175.1-201ENST00000426547 285 ntTSL 5 BASIC0.98□□□□□ -2.25
FOXA1P55317 AC099677.2-201ENST00000436385 175 ntBASIC0.98□□□□□ -2.25
FOXA1P55317 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC0.98□□□□□ -2.25
FOXA1P55317 TRAPPC2P8-201ENST00000440676 396 ntBASIC0.98□□□□□ -2.25
FOXA1P55317 MTCO1P44-201ENST00000441935 243 ntBASIC0.98□□□□□ -2.25
FOXA1P55317 TRAPPC2P3-201ENST00000443200 321 ntBASIC0.98□□□□□ -2.25
FOXA1P55317 MYCBP2-AS1-203ENST00000450627 349 ntTSL 3 BASIC0.98□□□□□ -2.25
FOXA1P55317 MCHR2-AS1-203ENST00000451220 429 ntTSL 3 BASIC0.98□□□□□ -2.25
FOXA1P55317 MTCO2P18-201ENST00000457151 658 ntBASIC0.98□□□□□ -2.25
FOXA1P55317 AC005062.1-201ENST00000457921 566 ntTSL 3 BASIC0.98□□□□□ -2.25
FOXA1P55317 AC010531.2-201ENST00000465012 153 ntBASIC0.98□□□□□ -2.25
FOXA1P55317 RNA5SP445-201ENST00000515889 115 ntBASIC0.98□□□□□ -2.25
FOXA1P55317 SNORA14.1-201ENST00000516113 141 ntBASIC0.98□□□□□ -2.25
FOXA1P55317 OSBPL9P5-201ENST00000542581 171 ntBASIC0.98□□□□□ -2.25
FOXA1P55317 AC008088.1-201ENST00000580993 280 ntBASIC0.98□□□□□ -2.25
FOXA1P55317 MIR4424-201ENST00000585257 86 ntBASIC0.98□□□□□ -2.25
FOXA1P55317 AC136443.5-201ENST00000603741 370 ntBASIC0.98□□□□□ -2.25
FOXA1P55317 AC064807.4-201ENST00000607201 407 ntBASIC0.98□□□□□ -2.25
FOXA1P55317 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC0.98□□□□□ -2.25
FOXA1P55317 AC083806.3-201ENST00000614016 455 ntBASIC0.98□□□□□ -2.25
FOXA1P55317 AC008147.4-201ENST00000617570 1204 ntBASIC0.98□□□□□ -2.25
FOXA1P55317 AL136221.1-201ENST00000621449 509 ntBASIC0.98□□□□□ -2.25
FOXA1P55317 Z69908.1-201ENST00000622603 247 ntBASIC0.98□□□□□ -2.25
FOXA1P55317 SENP7-201ENST00000314261 4736 ntAPPRIS ALT2 TSL 1 (best) BASIC0.98□□□□□ -2.25
FOXA1P55317 KTN1-205ENST00000395314 4618 ntAPPRIS P4 TSL 1 (best) BASIC0.98□□□□□ -2.25
FOXA1P55317 AL159152.1-201ENST00000635019 2587 ntBASIC0.98□□□□□ -2.25
FOXA1P55317 MIR96-201ENST00000362288 78 ntBASIC0.97□□□□□ -2.25
FOXA1P55317 Y_RNA.255-201ENST00000364581 97 ntBASIC0.97□□□□□ -2.25
FOXA1P55317 SNORD116-8-201ENST00000384365 95 ntBASIC0.97□□□□□ -2.25
FOXA1P55317 RNU6-1106P-201ENST00000390845 107 ntBASIC0.97□□□□□ -2.25
FOXA1P55317 RNU6-1093P-201ENST00000391194 107 ntBASIC0.97□□□□□ -2.25
FOXA1P55317 MIR1267-201ENST00000408723 78 ntBASIC0.97□□□□□ -2.25
FOXA1P55317 NAALADL2-AS1-201ENST00000426315 804 ntTSL 5 BASIC0.97□□□□□ -2.25
FOXA1P55317 AL606489.2-201ENST00000433886 234 ntBASIC0.97□□□□□ -2.25
FOXA1P55317 AL122017.1-201ENST00000435858 784 ntTSL 2 BASIC0.97□□□□□ -2.25
FOXA1P55317 AC007395.1-201ENST00000451333 677 ntBASIC0.97□□□□□ -2.25
FOXA1P55317 snoU13.6-201ENST00000458785 104 ntBASIC0.97□□□□□ -2.25
FOXA1P55317 RPL9P9-202ENST00000466501 579 ntBASIC0.97□□□□□ -2.25
FOXA1P55317 RPS3AP17-201ENST00000472594 777 ntBASIC0.97□□□□□ -2.25
FOXA1P55317 RPS23P5-201ENST00000495419 428 ntBASIC0.97□□□□□ -2.25
FOXA1P55317 AC074124.1-201ENST00000502368 375 ntTSL 3 BASIC0.97□□□□□ -2.25
FOXA1P55317 RNU6-612P-201ENST00000516909 102 ntBASIC0.97□□□□□ -2.25
FOXA1P55317 RNU6-323P-201ENST00000521915 107 ntBASIC0.97□□□□□ -2.25
FOXA1P55317 MTND3P12-201ENST00000559068 328 ntBASIC0.97□□□□□ -2.25
FOXA1P55317 SNORA59B-202ENST00000578183 701 ntBASIC0.97□□□□□ -2.25
FOXA1P55317 AC090398.1-202ENST00000580403 457 ntTSL 2 BASIC0.97□□□□□ -2.25
FOXA1P55317 AC087683.1-201ENST00000591187 441 ntBASIC0.97□□□□□ -2.25
FOXA1P55317 AC119751.7-201ENST00000600494 245 ntBASIC0.97□□□□□ -2.25
FOXA1P55317 Z99497.2-201ENST00000603634 310 ntBASIC0.97□□□□□ -2.25
FOXA1P55317 RPL17P51-201ENST00000605218 238 ntBASIC0.97□□□□□ -2.25
FOXA1P55317 AC080078.3-201ENST00000605407 463 ntBASIC0.97□□□□□ -2.25
FOXA1P55317 AL355512.1-202ENST00000607952 209 ntTSL 5 BASIC0.97□□□□□ -2.25
FOXA1P55317 AC007684.1-201ENST00000609671 477 ntBASIC0.97□□□□□ -2.25
FOXA1P55317 MESTIT1_1.1-201ENST00000618871 140 ntBASIC0.97□□□□□ -2.25
FOXA1P55317 AC078883.4-201ENST00000623218 367 ntBASIC0.97□□□□□ -2.25
FOXA1P55317 PLD1-217ENST00000627725 174 ntTSL 5 BASIC0.97□□□□□ -2.25
FOXA1P55317 HFM1-201ENST00000370425 4931 ntAPPRIS P1 TSL 1 (best) BASIC0.97□□□□□ -2.25
FOXA1P55317 Y_RNA.1-201ENST00000352915 104 ntBASIC0.96□□□□□ -2.26
FOXA1P55317 MT-ND1-201ENST00000361390 956 ntAPPRIS P1 BASIC0.96□□□□□ -2.26
FOXA1P55317 RNU6-862P-201ENST00000362804 105 ntBASIC0.96□□□□□ -2.26
FOXA1P55317 RNU4-38P-201ENST00000364472 129 ntBASIC0.96□□□□□ -2.26
FOXA1P55317 Y_RNA.296-201ENST00000364930 108 ntBASIC0.96□□□□□ -2.26
FOXA1P55317 SNORA18.2-201ENST00000383865 132 ntBASIC0.96□□□□□ -2.26
FOXA1P55317 LINC01412-201ENST00000413525 362 ntTSL 2 BASIC0.96□□□□□ -2.26
FOXA1P55317 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC0.96□□□□□ -2.26
FOXA1P55317 INTS6L-AS1-201ENST00000430820 398 ntTSL 3 BASIC0.96□□□□□ -2.26
FOXA1P55317 USP9YP28-201ENST00000435142 589 ntBASIC0.96□□□□□ -2.26
FOXA1P55317 UBE2V1P8-201ENST00000437166 265 ntBASIC0.96□□□□□ -2.26
FOXA1P55317 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC0.96□□□□□ -2.26
FOXA1P55317 MTND1P26-201ENST00000440488 538 ntBASIC0.96□□□□□ -2.26
FOXA1P55317 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC0.96□□□□□ -2.26
FOXA1P55317 MTCO1P19-201ENST00000443487 500 ntBASIC0.96□□□□□ -2.26
FOXA1P55317 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC0.96□□□□□ -2.26
FOXA1P55317 ATP5J2P3-201ENST00000451550 258 ntBASIC0.96□□□□□ -2.26
FOXA1P55317 TPTE2P5-203ENST00000458118 728 ntBASIC0.96□□□□□ -2.26
FOXA1P55317 RNU6-1037P-201ENST00000459571 107 ntBASIC0.96□□□□□ -2.26
FOXA1P55317 RPS29P27-201ENST00000463711 170 ntBASIC0.96□□□□□ -2.26
FOXA1P55317 MTCO3P38-201ENST00000468910 766 ntBASIC0.96□□□□□ -2.26
FOXA1P55317 HMGB1P29-201ENST00000505659 499 ntBASIC0.96□□□□□ -2.26
FOXA1P55317 AC108078.1-201ENST00000508073 725 ntBASIC0.96□□□□□ -2.26
FOXA1P55317 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC0.96□□□□□ -2.26
FOXA1P55317 RN7SKP298-201ENST00000515950 94 ntBASIC0.96□□□□□ -2.26
FOXA1P55317 RNU6-189P-201ENST00000516120 101 ntBASIC0.96□□□□□ -2.26
FOXA1P55317 RNU6-1038P-201ENST00000516516 104 ntBASIC0.96□□□□□ -2.26
FOXA1P55317 DEFB131C-201ENST00000528817 165 ntBASIC0.96□□□□□ -2.26
FOXA1P55317 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC0.96□□□□□ -2.26
FOXA1P55317 SNORA77B-201ENST00000578179 125 ntBASIC0.96□□□□□ -2.26
FOXA1P55317 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC0.96□□□□□ -2.26
FOXA1P55317 MIR4295-201ENST00000585286 85 ntBASIC0.96□□□□□ -2.26
FOXA1P55317 CTHRC1P1-201ENST00000605383 469 ntBASIC0.96□□□□□ -2.26
FOXA1P55317 AC103810.9-201ENST00000606688 112 ntBASIC0.96□□□□□ -2.26
FOXA1P55317 AC064836.2-201ENST00000609491 462 ntBASIC0.96□□□□□ -2.26
FOXA1P55317 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC0.96□□□□□ -2.26
FOXA1P55317 SENP7-207ENST00000394095 4945 ntAPPRIS P3 TSL 1 (best) BASIC0.96□□□□□ -2.26
FOXA1P55317 CHST9-202ENST00000581714 2043 ntAPPRIS P1 TSL 1 (best) BASIC0.96□□□□□ -2.26
FOXA1P55317 PPP1R3A-201ENST00000284601 4384 ntAPPRIS P1 TSL 1 (best) BASIC0.96□□□□□ -2.26
FOXA1P55317 AC007370.2-201ENST00000506899 2694 ntTSL 5 BASIC0.95□□□□□ -2.26
FOXA1P55317 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC0.95□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 116.8 ms