Protein–RNA interactions for Protein: P53420

COL4A4, Collagen alpha-4(IV) chain, humanhuman

Predicted RBP Predictions only

Length 1,690 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A4P53420 SNORD116.3-201ENST00000517176 78 ntBASIC1.81□□□□□ -2.12
COL4A4P53420 RNU6-323P-201ENST00000521915 107 ntBASIC1.81□□□□□ -2.12
COL4A4P53420 AC087664.2-201ENST00000522898 551 ntTSL 4 BASIC1.81□□□□□ -2.12
COL4A4P53420 AL137100.2-201ENST00000555786 315 ntBASIC1.81□□□□□ -2.12
COL4A4P53420 MIR4419B-201ENST00000577260 68 ntBASIC1.81□□□□□ -2.12
COL4A4P53420 MIR5696-201ENST00000578474 85 ntBASIC1.81□□□□□ -2.12
COL4A4P53420 AL031176.1-201ENST00000604554 466 ntBASIC1.81□□□□□ -2.12
COL4A4P53420 SNHG22-203ENST00000617833 660 ntBASIC1.81□□□□□ -2.12
COL4A4P53420 OR4C15-202ENST00000642128 951 ntAPPRIS P1 BASIC1.81□□□□□ -2.12
COL4A4P53420 USP45-208ENST00000500704 5826 ntAPPRIS P1 TSL 5 BASIC1.81□□□□□ -2.12
COL4A4P53420 SNORA31-201ENST00000362607 130 ntBASIC1.8□□□□□ -2.12
COL4A4P53420 SNORA16.1-201ENST00000364597 132 ntBASIC1.8□□□□□ -2.12
COL4A4P53420 Y_RNA.376-201ENST00000365638 108 ntBASIC1.8□□□□□ -2.12
COL4A4P53420 RNU6-190P-201ENST00000384154 102 ntBASIC1.8□□□□□ -2.12
COL4A4P53420 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC1.8□□□□□ -2.12
COL4A4P53420 MRPS18CP6-201ENST00000423587 223 ntBASIC1.8□□□□□ -2.12
COL4A4P53420 AL359672.1-201ENST00000442302 409 ntBASIC1.8□□□□□ -2.12
COL4A4P53420 AL392103.1-201ENST00000447000 198 ntBASIC1.8□□□□□ -2.12
COL4A4P53420 AC005703.2-201ENST00000453339 343 ntTSL 2 BASIC1.8□□□□□ -2.12
COL4A4P53420 snoU109.4-201ENST00000458953 143 ntBASIC1.8□□□□□ -2.12
COL4A4P53420 RNU7-138P-201ENST00000459479 64 ntBASIC1.8□□□□□ -2.12
COL4A4P53420 RNU2-69P-201ENST00000516061 100 ntBASIC1.8□□□□□ -2.12
COL4A4P53420 AC087441.2-201ENST00000529141 262 ntBASIC1.8□□□□□ -2.12
COL4A4P53420 AC040926.1-201ENST00000530195 238 ntBASIC1.8□□□□□ -2.12
COL4A4P53420 RRN3P3-201ENST00000549207 578 ntBASIC1.8□□□□□ -2.12
COL4A4P53420 AC006600.1-201ENST00000572529 153 ntBASIC1.8□□□□□ -2.12
COL4A4P53420 MIR4421-201ENST00000578133 69 ntBASIC1.8□□□□□ -2.12
COL4A4P53420 MIR5692A1-201ENST00000580523 69 ntBASIC1.8□□□□□ -2.12
COL4A4P53420 AL355297.3-201ENST00000604082 446 ntBASIC1.8□□□□□ -2.12
COL4A4P53420 AC079610.3-201ENST00000606960 147 ntTSL 3 BASIC1.8□□□□□ -2.12
COL4A4P53420 AC096772.1-201ENST00000609146 564 ntBASIC1.8□□□□□ -2.12
COL4A4P53420 AL512598.1-201ENST00000610158 273 ntBASIC1.8□□□□□ -2.12
COL4A4P53420 DLEU2_2.2-201ENST00000615474 90 ntBASIC1.8□□□□□ -2.12
COL4A4P53420 ATF1-201ENST00000262053 2181 ntAPPRIS P1 TSL 1 (best) BASIC1.8□□□□□ -2.12
COL4A4P53420 PABPC1P7-201ENST00000413177 1513 ntBASIC1.8□□□□□ -2.12
COL4A4P53420 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC1.8□□□□□ -2.12
COL4A4P53420 SLCO1B3-202ENST00000381545 2805 ntAPPRIS P1 TSL 2 BASIC1.8□□□□□ -2.12
COL4A4P53420 MIR335-201ENST00000362173 94 ntBASIC1.8□□□□□ -2.12
COL4A4P53420 RNU6-450P-201ENST00000364654 107 ntBASIC1.8□□□□□ -2.12
COL4A4P53420 SNORA20.1-201ENST00000364790 130 ntBASIC1.8□□□□□ -2.12
COL4A4P53420 RNU6-713P-201ENST00000384761 107 ntBASIC1.8□□□□□ -2.12
COL4A4P53420 RPL21P90-201ENST00000415692 466 ntBASIC1.8□□□□□ -2.12
COL4A4P53420 AL050349.1-201ENST00000441029 401 ntTSL 2 BASIC1.8□□□□□ -2.12
COL4A4P53420 AC018359.1-201ENST00000442567 574 ntTSL 4 BASIC1.8□□□□□ -2.12
COL4A4P53420 AL121871.1-201ENST00000443413 436 ntBASIC1.8□□□□□ -2.12
COL4A4P53420 AIG1P1-201ENST00000503376 148 ntBASIC1.8□□□□□ -2.12
COL4A4P53420 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC1.8□□□□□ -2.12
COL4A4P53420 LINC02514-201ENST00000509058 498 ntTSL 3 BASIC1.8□□□□□ -2.12
COL4A4P53420 RNU6-1023P-201ENST00000516137 106 ntBASIC1.8□□□□□ -2.12
COL4A4P53420 RN7SKP277-201ENST00000516895 283 ntBASIC1.8□□□□□ -2.12
COL4A4P53420 RN7SKP258-201ENST00000517151 304 ntBASIC1.8□□□□□ -2.12
COL4A4P53420 AC100871.2-201ENST00000522005 327 ntTSL 3 BASIC1.8□□□□□ -2.12
COL4A4P53420 AC022690.2-201ENST00000525673 589 ntTSL 3 BASIC1.8□□□□□ -2.12
COL4A4P53420 AC022039.1-201ENST00000527110 488 ntTSL 2 BASIC1.8□□□□□ -2.12
COL4A4P53420 SDHAF2-203ENST00000534878 523 ntTSL 2 BASIC1.8□□□□□ -2.12
COL4A4P53420 HSPE1P20-201ENST00000538133 289 ntBASIC1.8□□□□□ -2.12
COL4A4P53420 AC011477.3-201ENST00000585571 403 ntTSL 5 BASIC1.8□□□□□ -2.12
COL4A4P53420 AC004805.2-201ENST00000605382 482 ntBASIC1.8□□□□□ -2.12
COL4A4P53420 AL138825.1-201ENST00000618587 192 ntBASIC1.8□□□□□ -2.12
COL4A4P53420 Metazoa_SRP.32-201ENST00000622685 286 ntBASIC1.8□□□□□ -2.12
COL4A4P53420 U2.22-201ENST00000636441 106 ntBASIC1.8□□□□□ -2.12
COL4A4P53420 DEUP1-202ENST00000525646 1920 ntTSL 1 (best) BASIC1.79□□□□□ -2.12
COL4A4P53420 Y_RNA.39-201ENST00000362620 98 ntBASIC1.79□□□□□ -2.12
COL4A4P53420 Y_RNA.288-201ENST00000364854 92 ntBASIC1.79□□□□□ -2.12
COL4A4P53420 RNU6-1329P-201ENST00000365664 107 ntBASIC1.79□□□□□ -2.12
COL4A4P53420 RNU6-611P-201ENST00000384276 104 ntBASIC1.79□□□□□ -2.12
COL4A4P53420 Y_RNA.785-201ENST00000384290 109 ntBASIC1.79□□□□□ -2.12
COL4A4P53420 RNU6-95P-201ENST00000384697 107 ntBASIC1.79□□□□□ -2.12
COL4A4P53420 SNORA19-201ENST00000384737 128 ntBASIC1.79□□□□□ -2.12
COL4A4P53420 SNORD73A-201ENST00000386062 65 ntBASIC1.79□□□□□ -2.12
COL4A4P53420 RPS15AP40-201ENST00000419621 391 ntBASIC1.79□□□□□ -2.12
COL4A4P53420 UBE2D3P2-201ENST00000424409 445 ntBASIC1.79□□□□□ -2.12
COL4A4P53420 AL591704.1-201ENST00000432574 275 ntBASIC1.79□□□□□ -2.12
COL4A4P53420 CHEK2P4-201ENST00000450340 246 ntBASIC1.79□□□□□ -2.12
COL4A4P53420 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC1.79□□□□□ -2.12
COL4A4P53420 MTND4LP30-201ENST00000454092 297 ntBASIC1.79□□□□□ -2.12
COL4A4P53420 AC112492.4-201ENST00000456549 352 ntBASIC1.79□□□□□ -2.12
COL4A4P53420 SPAG11B-206ENST00000458665 444 ntTSL 5 BASIC1.79□□□□□ -2.12
COL4A4P53420 RNA5SP82-201ENST00000516707 92 ntBASIC1.79□□□□□ -2.12
COL4A4P53420 RNU6-789P-201ENST00000517105 102 ntBASIC1.79□□□□□ -2.12
COL4A4P53420 NCRNA00250-201ENST00000519500 519 ntTSL 4 BASIC1.79□□□□□ -2.12
COL4A4P53420 AC144568.1-201ENST00000520139 137 ntBASIC1.79□□□□□ -2.12
COL4A4P53420 AC011824.2-201ENST00000579896 579 ntTSL 4 BASIC1.79□□□□□ -2.12
COL4A4P53420 AL133393.1-201ENST00000603277 287 ntBASIC1.79□□□□□ -2.12
COL4A4P53420 AC010900.2-201ENST00000604508 210 ntBASIC1.79□□□□□ -2.12
COL4A4P53420 AC008962.1-201ENST00000605729 304 ntBASIC1.79□□□□□ -2.12
COL4A4P53420 MIR15A-201ENST00000607334 83 ntBASIC1.79□□□□□ -2.12
COL4A4P53420 hsa-mir-3158-1.1-201ENST00000637571 81 ntBASIC1.79□□□□□ -2.12
COL4A4P53420 C1orf141-202ENST00000371006 2053 ntAPPRIS P3 TSL 2 BASIC1.79□□□□□ -2.12
COL4A4P53420 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC1.79□□□□□ -2.12
COL4A4P53420 PIK3C2G-203ENST00000535651 2497 ntTSL 5 BASIC1.78□□□□□ -2.12
COL4A4P53420 ZNF734P-201ENST00000419494 1534 ntBASIC1.78□□□□□ -2.12
COL4A4P53420 NBPF20-202ENST00000392971 18450 ntAPPRIS P2 TSL 5 BASIC1.78□□□□□ -2.12
COL4A4P53420 AC138393.1-203ENST00000327086 343 ntBASIC1.78□□□□□ -2.12
COL4A4P53420 Y_RNA.324-201ENST00000365165 102 ntBASIC1.78□□□□□ -2.12
COL4A4P53420 CLDN10-202ENST00000376855 701 ntTSL 2 BASIC1.78□□□□□ -2.12
COL4A4P53420 Y_RNA.483-201ENST00000384380 101 ntBASIC1.78□□□□□ -2.12
COL4A4P53420 AC092447.6-201ENST00000414578 210 ntBASIC1.78□□□□□ -2.12
COL4A4P53420 RPL21P38-201ENST00000418090 167 ntBASIC1.78□□□□□ -2.12
COL4A4P53420 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC1.78□□□□□ -2.12
Retrieved 100 of 98,524 protein–RNA pairs in 131.4 ms