Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 AC004052.1-202ENST00000505680 516 ntTSL 3 BASIC2.65□□□□□ -1.99
NEK3P51956 RNA5SP282-201ENST00000516355 108 ntBASIC2.65□□□□□ -1.99
NEK3P51956 DEFB131C-201ENST00000528817 165 ntBASIC2.65□□□□□ -1.99
NEK3P51956 AP000462.3-201ENST00000545593 330 ntTSL 5 BASIC2.65□□□□□ -1.99
NEK3P51956 AL137847.3-201ENST00000611521 109 ntBASIC2.65□□□□□ -1.99
NEK3P51956 MALAT1-207ENST00000613376 132 ntTSL 3 BASIC2.65□□□□□ -1.99
NEK3P51956 DYNC2H1-202ENST00000375735 13678 ntAPPRIS ALT1 TSL 1 (best) BASIC2.65□□□□□ -1.99
NEK3P51956 MIR6073-201ENST00000352083 89 ntBASIC2.64□□□□□ -1.99
NEK3P51956 RNU6-867P-201ENST00000364956 107 ntBASIC2.64□□□□□ -1.99
NEK3P51956 RNU6-160P-201ENST00000384591 107 ntBASIC2.64□□□□□ -1.99
NEK3P51956 Y_RNA.577-201ENST00000384794 101 ntBASIC2.64□□□□□ -1.99
NEK3P51956 TRAV41-201ENST00000390468 336 ntAPPRIS P1 BASIC2.64□□□□□ -1.99
NEK3P51956 UBE2V1P7-201ENST00000446395 340 ntBASIC2.64□□□□□ -1.99
NEK3P51956 MTCO3P8-201ENST00000453691 755 ntBASIC2.64□□□□□ -1.99
NEK3P51956 RNU7-152P-201ENST00000458982 64 ntBASIC2.64□□□□□ -1.99
NEK3P51956 AC114982.1-201ENST00000469402 321 ntBASIC2.64□□□□□ -1.99
NEK3P51956 ATP5EP1-201ENST00000510257 156 ntBASIC2.64□□□□□ -1.99
NEK3P51956 AC008549.1-201ENST00000512900 643 ntBASIC2.64□□□□□ -1.99
NEK3P51956 RNU6-1114P-201ENST00000516022 107 ntBASIC2.64□□□□□ -1.99
NEK3P51956 RNU2-34P-201ENST00000516534 121 ntBASIC2.64□□□□□ -1.99
NEK3P51956 RNU7-193P-201ENST00000516723 65 ntBASIC2.64□□□□□ -1.99
NEK3P51956 Y_RNA.718-201ENST00000517110 102 ntBASIC2.64□□□□□ -1.99
NEK3P51956 PRELID2P1-201ENST00000552837 301 ntBASIC2.64□□□□□ -1.99
NEK3P51956 AL355802.3-201ENST00000607571 545 ntBASIC2.64□□□□□ -1.99
NEK3P51956 MIR6817-201ENST00000615588 66 ntBASIC2.64□□□□□ -1.99
NEK3P51956 AC009487.4-201ENST00000624969 3585 ntBASIC2.64□□□□□ -1.99
NEK3P51956 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
NEK3P51956 SENP7-205ENST00000394091 4434 ntAPPRIS ALT2 TSL 1 (best) BASIC2.63□□□□□ -1.99
NEK3P51956 RNA5SP68-201ENST00000363885 119 ntBASIC2.63□□□□□ -1.99
NEK3P51956 Y_RNA.364-201ENST00000365532 101 ntBASIC2.63□□□□□ -1.99
NEK3P51956 FAM206A-202ENST00000374624 499 ntTSL 3 BASIC2.63□□□□□ -1.99
NEK3P51956 RNA5SP465-201ENST00000391195 109 ntBASIC2.63□□□□□ -1.99
NEK3P51956 SNORD23.1-201ENST00000408212 104 ntBASIC2.63□□□□□ -1.99
NEK3P51956 RNA5SP181-201ENST00000410246 98 ntBASIC2.63□□□□□ -1.99
NEK3P51956 MTND3P23-201ENST00000431980 347 ntBASIC2.63□□□□□ -1.99
NEK3P51956 MTCO3P29-201ENST00000432119 779 ntBASIC2.63□□□□□ -1.99
NEK3P51956 AL353997.1-201ENST00000432936 108 ntBASIC2.63□□□□□ -1.99
NEK3P51956 AL353680.1-201ENST00000433788 337 ntTSL 3 BASIC2.63□□□□□ -1.99
NEK3P51956 AC074290.1-201ENST00000448883 135 ntBASIC2.63□□□□□ -1.99
NEK3P51956 RNU1-131P-201ENST00000458943 161 ntBASIC2.63□□□□□ -1.99
NEK3P51956 Y_RNA.632-201ENST00000459189 102 ntBASIC2.63□□□□□ -1.99
NEK3P51956 SNORD19B-201ENST00000459623 84 ntBASIC2.63□□□□□ -1.99
NEK3P51956 SRIP1-201ENST00000489235 288 ntBASIC2.63□□□□□ -1.99
NEK3P51956 RNU6-1213P-201ENST00000517075 94 ntBASIC2.63□□□□□ -1.99
NEK3P51956 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC2.63□□□□□ -1.99
NEK3P51956 AC004584.2-201ENST00000570407 410 ntBASIC2.63□□□□□ -1.99
NEK3P51956 AC015845.1-201ENST00000579285 335 ntTSL 3 BASIC2.63□□□□□ -1.99
NEK3P51956 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC2.63□□□□□ -1.99
NEK3P51956 LCORL-202ENST00000382224 4984 ntAPPRIS ALT2 TSL 5 BASIC2.63□□□□□ -1.99
NEK3P51956 RICTOR-202ENST00000357387 9543 ntAPPRIS P1 TSL 1 (best) BASIC2.63□□□□□ -1.99
NEK3P51956 NEDD4-205ENST00000506154 6751 ntTSL 1 (best) BASIC2.63□□□□□ -1.99
NEK3P51956 AC007336.1-201ENST00000576365 3828 ntBASIC2.63□□□□□ -1.99
NEK3P51956 Y_RNA.132-201ENST00000363421 102 ntBASIC2.62□□□□□ -1.99
NEK3P51956 RNU5E-4P-201ENST00000364931 120 ntBASIC2.62□□□□□ -1.99
NEK3P51956 RNU1-138P-201ENST00000384093 164 ntBASIC2.62□□□□□ -1.99
NEK3P51956 SNORD116-29-201ENST00000384516 83 ntBASIC2.62□□□□□ -1.99
NEK3P51956 MIR518A2-201ENST00000384966 87 ntBASIC2.62□□□□□ -1.99
NEK3P51956 MIR1283-1-201ENST00000408494 87 ntBASIC2.62□□□□□ -1.99
NEK3P51956 USP9YP16-201ENST00000430287 407 ntBASIC2.62□□□□□ -1.99
NEK3P51956 USP9YP23-201ENST00000455085 407 ntBASIC2.62□□□□□ -1.99
NEK3P51956 RPL30P15-201ENST00000457129 321 ntBASIC2.62□□□□□ -1.99
NEK3P51956 HMGB3P3-201ENST00000510526 400 ntBASIC2.62□□□□□ -1.99
NEK3P51956 SNORA31.15-201ENST00000516771 132 ntBASIC2.62□□□□□ -1.99
NEK3P51956 MIR2355-201ENST00000517199 87 ntBASIC2.62□□□□□ -1.99
NEK3P51956 AC087463.2-201ENST00000565943 472 ntTSL 3 BASIC2.62□□□□□ -1.99
NEK3P51956 AC022202.1-201ENST00000613515 211 ntBASIC2.62□□□□□ -1.99
NEK3P51956 IGHVIII-44-202ENST00000636235 289 ntBASIC2.62□□□□□ -1.99
NEK3P51956 AC112487.2-201ENST00000637950 304 ntBASIC2.62□□□□□ -1.99
NEK3P51956 BCL2L11-225ENST00000640419 249 ntAPPRIS ALT2 TSL 5 BASIC2.62□□□□□ -1.99
NEK3P51956 MTND5P10-201ENST00000603719 1809 ntBASIC2.61□□□□□ -1.99
NEK3P51956 RNU6-890P-201ENST00000384121 107 ntBASIC2.61□□□□□ -1.99
NEK3P51956 MIR586-201ENST00000385035 97 ntBASIC2.61□□□□□ -1.99
NEK3P51956 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC2.61□□□□□ -1.99
NEK3P51956 AC055764.1-201ENST00000454526 473 ntTSL 3 BASIC2.61□□□□□ -1.99
NEK3P51956 AP000870.1-201ENST00000472927 406 ntBASIC2.61□□□□□ -1.99
NEK3P51956 SNORA25.14-201ENST00000516481 132 ntBASIC2.61□□□□□ -1.99
NEK3P51956 RNA5SP148-201ENST00000516527 94 ntBASIC2.61□□□□□ -1.99
NEK3P51956 AC091144.1-201ENST00000519573 138 ntBASIC2.61□□□□□ -1.99
NEK3P51956 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC2.61□□□□□ -1.99
NEK3P51956 AC090617.3-201ENST00000573670 475 ntBASIC2.61□□□□□ -1.99
NEK3P51956 MIR4753-201ENST00000585119 83 ntBASIC2.61□□□□□ -1.99
NEK3P51956 AL117336.2-201ENST00000602435 335 ntBASIC2.61□□□□□ -1.99
NEK3P51956 CYP2C61P-201ENST00000604072 290 ntBASIC2.61□□□□□ -1.99
NEK3P51956 SNORD11B-201ENST00000607707 90 ntBASIC2.61□□□□□ -1.99
NEK3P51956 AC126177.8-201ENST00000618339 1015 ntBASIC2.61□□□□□ -1.99
NEK3P51956 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC2.61□□□□□ -1.99
NEK3P51956 AC008873.1-201ENST00000625051 138 ntBASIC2.61□□□□□ -1.99
NEK3P51956 DDIAS-201ENST00000329143 3367 ntAPPRIS P2 TSL 1 (best) BASIC2.61□□□□□ -1.99
NEK3P51956 ZNF470-202ENST00000391709 6601 ntAPPRIS P1 TSL 5 BASIC2.61□□□□□ -1.99
NEK3P51956 Z82195.2-201ENST00000612348 18351 ntBASIC2.6□□□□□ -1.99
NEK3P51956 AC011124.2-201ENST00000518739 3222 ntTSL 1 (best) BASIC2.6□□□□□ -1.99
NEK3P51956 CEP57L1-216ENST00000521522 2259 ntTSL 5 BASIC2.6□□□□□ -1.99
NEK3P51956 AKAP9-203ENST00000359028 12247 ntAPPRIS ALT2 TSL 5 BASIC2.6□□□□□ -1.99
NEK3P51956 RNU1-58P-201ENST00000362413 163 ntBASIC2.6□□□□□ -1.99
NEK3P51956 RNU4-82P-201ENST00000362443 140 ntBASIC2.6□□□□□ -1.99
NEK3P51956 RNU4-73P-201ENST00000363164 141 ntBASIC2.6□□□□□ -1.99
NEK3P51956 Y_RNA.106-201ENST00000363189 100 ntBASIC2.6□□□□□ -1.99
NEK3P51956 RNU6-873P-201ENST00000363833 107 ntBASIC2.6□□□□□ -1.99
NEK3P51956 Y_RNA.187-201ENST00000363918 113 ntBASIC2.6□□□□□ -1.99
NEK3P51956 EHHADH-202ENST00000440662 656 ntTSL 3 BASIC2.6□□□□□ -1.99
Retrieved 100 of 98,524 protein–RNA pairs in 111.9 ms