Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 RNU2-41P-201ENST00000410991 178 ntBASIC1.28□□□□□ -2.2
CXCL12P48061 AL512271.1-201ENST00000439878 434 ntTSL 3 BASIC1.28□□□□□ -2.2
CXCL12P48061 MTND3P16-201ENST00000452205 344 ntBASIC1.28□□□□□ -2.2
CXCL12P48061 RNU1-98P-201ENST00000458992 160 ntBASIC1.28□□□□□ -2.2
CXCL12P48061 AC008628.2-201ENST00000502605 298 ntBASIC1.28□□□□□ -2.2
CXCL12P48061 AC008834.1-201ENST00000511612 175 ntBASIC1.28□□□□□ -2.2
CXCL12P48061 RNU6-612P-201ENST00000516909 102 ntBASIC1.28□□□□□ -2.2
CXCL12P48061 IGHVII-53-1-201ENST00000519538 255 ntBASIC1.28□□□□□ -2.2
CXCL12P48061 AC025043.1-201ENST00000558047 625 ntTSL 2 BASIC1.28□□□□□ -2.2
CXCL12P48061 MIR5692C1-201ENST00000585309 91 ntBASIC1.28□□□□□ -2.2
CXCL12P48061 AL357078.3-201ENST00000607528 618 ntBASIC1.28□□□□□ -2.2
CXCL12P48061 AC092807.2-201ENST00000609367 243 ntBASIC1.28□□□□□ -2.2
CXCL12P48061 AL590240.4-201ENST00000616908 390 ntBASIC1.28□□□□□ -2.2
CXCL12P48061 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC1.28□□□□□ -2.2
CXCL12P48061 FGF7-202ENST00000560270 1688 ntTSL 1 (best) BASIC1.28□□□□□ -2.2
CXCL12P48061 SKIL-204ENST00000458537 7182 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
CXCL12P48061 SEMG2-201ENST00000372769 2051 ntAPPRIS P1 TSL 1 (best) BASIC1.27□□□□□ -2.21
CXCL12P48061 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
CXCL12P48061 MIR126-201ENST00000362291 85 ntBASIC1.27□□□□□ -2.21
CXCL12P48061 RNU6-23P-201ENST00000363283 107 ntBASIC1.27□□□□□ -2.21
CXCL12P48061 Y_RNA.167-201ENST00000363735 109 ntBASIC1.27□□□□□ -2.21
CXCL12P48061 U3.9-201ENST00000363823 204 ntBASIC1.27□□□□□ -2.21
CXCL12P48061 RNA5SP363-201ENST00000365072 115 ntBASIC1.27□□□□□ -2.21
CXCL12P48061 Y_RNA.332-201ENST00000365271 113 ntBASIC1.27□□□□□ -2.21
CXCL12P48061 RNU6-648P-201ENST00000410190 107 ntBASIC1.27□□□□□ -2.21
CXCL12P48061 LINC01344-201ENST00000420760 261 ntTSL 3 BASIC1.27□□□□□ -2.21
CXCL12P48061 TIMM9P3-201ENST00000428659 274 ntBASIC1.27□□□□□ -2.21
CXCL12P48061 AL360091.2-201ENST00000446847 650 ntTSL 5 BASIC1.27□□□□□ -2.21
CXCL12P48061 RNA5SP57-201ENST00000459463 123 ntBASIC1.27□□□□□ -2.21
CXCL12P48061 RNU6-1037P-201ENST00000459571 107 ntBASIC1.27□□□□□ -2.21
CXCL12P48061 LINC01487-202ENST00000490497 423 ntTSL 3 BASIC1.27□□□□□ -2.21
CXCL12P48061 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC1.27□□□□□ -2.21
CXCL12P48061 AC107401.1-201ENST00000503426 685 ntBASIC1.27□□□□□ -2.21
CXCL12P48061 AC021146.2-201ENST00000504736 556 ntBASIC1.27□□□□□ -2.21
CXCL12P48061 RNVU1-2-201ENST00000516326 135 ntBASIC1.27□□□□□ -2.21
CXCL12P48061 PARPBP-209ENST00000537257 976 ntTSL 1 (best) BASIC1.27□□□□□ -2.21
CXCL12P48061 MIR3169-201ENST00000578032 83 ntBASIC1.27□□□□□ -2.21
CXCL12P48061 RBBP8-210ENST00000581687 617 ntTSL 2 BASIC1.27□□□□□ -2.21
CXCL12P48061 AC103591.3-201ENST00000608684 209 ntBASIC1.27□□□□□ -2.21
CXCL12P48061 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC1.27□□□□□ -2.21
CXCL12P48061 AL359880.1-201ENST00000621879 266 ntBASIC1.27□□□□□ -2.21
CXCL12P48061 AC130454.1-201ENST00000622948 401 ntBASIC1.27□□□□□ -2.21
CXCL12P48061 AC009541.1-201ENST00000438279 2662 ntBASIC1.27□□□□□ -2.21
CXCL12P48061 Y_RNA.481-201ENST00000384373 102 ntBASIC1.26□□□□□ -2.21
CXCL12P48061 RNU6-160P-201ENST00000384591 107 ntBASIC1.26□□□□□ -2.21
CXCL12P48061 RNU6-1106P-201ENST00000390845 107 ntBASIC1.26□□□□□ -2.21
CXCL12P48061 SNORA12.2-201ENST00000391040 156 ntBASIC1.26□□□□□ -2.21
CXCL12P48061 RNA5SP212-201ENST00000391223 107 ntBASIC1.26□□□□□ -2.21
CXCL12P48061 MIR208B-201ENST00000401172 77 ntBASIC1.26□□□□□ -2.21
CXCL12P48061 AL033519.2-201ENST00000403958 392 ntBASIC1.26□□□□□ -2.21
CXCL12P48061 RNU2-16P-201ENST00000410712 136 ntBASIC1.26□□□□□ -2.21
CXCL12P48061 UBE2V1P4-201ENST00000425374 344 ntBASIC1.26□□□□□ -2.21
CXCL12P48061 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC1.26□□□□□ -2.21
CXCL12P48061 MTND3P9-201ENST00000429526 346 ntBASIC1.26□□□□□ -2.21
CXCL12P48061 SNRPEP8-201ENST00000442866 260 ntBASIC1.26□□□□□ -2.21
CXCL12P48061 Z83846.1-201ENST00000446798 265 ntBASIC1.26□□□□□ -2.21
CXCL12P48061 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC1.26□□□□□ -2.21
CXCL12P48061 LINC01774-201ENST00000453569 595 ntTSL 2 BASIC1.26□□□□□ -2.21
CXCL12P48061 RNU6-1208P-201ENST00000459588 107 ntBASIC1.26□□□□□ -2.21
CXCL12P48061 RPS29P27-201ENST00000463711 170 ntBASIC1.26□□□□□ -2.21
CXCL12P48061 PLCH1-AS2-201ENST00000472913 408 ntTSL 2 BASIC1.26□□□□□ -2.21
CXCL12P48061 Y_RNA.654-201ENST00000497848 106 ntBASIC1.26□□□□□ -2.21
CXCL12P48061 AC093534.1-201ENST00000504977 132 ntBASIC1.26□□□□□ -2.21
CXCL12P48061 AC025465.4-201ENST00000513422 638 ntBASIC1.26□□□□□ -2.21
CXCL12P48061 Y_RNA.693-201ENST00000516641 110 ntBASIC1.26□□□□□ -2.21
CXCL12P48061 RNU6-1098P-201ENST00000516772 96 ntBASIC1.26□□□□□ -2.21
CXCL12P48061 AC087854.1-201ENST00000519706 414 ntBASIC1.26□□□□□ -2.21
CXCL12P48061 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC1.26□□□□□ -2.21
CXCL12P48061 AP003171.1-201ENST00000532770 266 ntTSL 2 BASIC1.26□□□□□ -2.21
CXCL12P48061 EIF4A1P12-201ENST00000551910 141 ntBASIC1.26□□□□□ -2.21
CXCL12P48061 AL512360.1-201ENST00000555346 234 ntBASIC1.26□□□□□ -2.21
CXCL12P48061 AC021231.3-201ENST00000558497 370 ntBASIC1.26□□□□□ -2.21
CXCL12P48061 AC007347.1-201ENST00000563879 281 ntTSL 3 BASIC1.26□□□□□ -2.21
CXCL12P48061 CYP4A27P-201ENST00000567218 190 ntBASIC1.26□□□□□ -2.21
CXCL12P48061 DLGAP1-AS4-201ENST00000582054 757 ntTSL 5 BASIC1.26□□□□□ -2.21
CXCL12P48061 MIR151B-201ENST00000584249 96 ntBASIC1.26□□□□□ -2.21
CXCL12P48061 BNIP3P25-201ENST00000596023 559 ntBASIC1.26□□□□□ -2.21
CXCL12P48061 CYP2C61P-201ENST00000604072 290 ntBASIC1.26□□□□□ -2.21
CXCL12P48061 MIR6788-201ENST00000618842 66 ntBASIC1.26□□□□□ -2.21
CXCL12P48061 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC1.26□□□□□ -2.21
CXCL12P48061 ATP11C-202ENST00000361648 6010 ntAPPRIS ALT2 TSL 1 (best) BASIC1.26□□□□□ -2.21
CXCL12P48061 HIF1A-212ENST00000557538 3468 ntTSL 1 (best) BASIC1.25□□□□□ -2.21
CXCL12P48061 LINC02555-201ENST00000563933 1951 ntBASIC1.25□□□□□ -2.21
CXCL12P48061 MIR340-201ENST00000362125 95 ntBASIC1.25□□□□□ -2.21
CXCL12P48061 RNU6-1317P-201ENST00000364582 104 ntBASIC1.25□□□□□ -2.21
CXCL12P48061 RNU4-75P-201ENST00000364621 146 ntBASIC1.25□□□□□ -2.21
CXCL12P48061 RNU6-1329P-201ENST00000365664 107 ntBASIC1.25□□□□□ -2.21
CXCL12P48061 RNU6-342P-201ENST00000384521 104 ntBASIC1.25□□□□□ -2.21
CXCL12P48061 Y_RNA.559-201ENST00000384686 107 ntBASIC1.25□□□□□ -2.21
CXCL12P48061 MIR514A2-201ENST00000385131 88 ntBASIC1.25□□□□□ -2.21
CXCL12P48061 MIR514A3-201ENST00000385132 88 ntBASIC1.25□□□□□ -2.21
CXCL12P48061 RNU6ATAC20P-201ENST00000408436 127 ntBASIC1.25□□□□□ -2.21
CXCL12P48061 RNU6-1068P-201ENST00000410958 103 ntBASIC1.25□□□□□ -2.21
CXCL12P48061 MTCO3P41-201ENST00000414801 328 ntBASIC1.25□□□□□ -2.21
CXCL12P48061 AC012306.1-201ENST00000423267 114 ntBASIC1.25□□□□□ -2.21
CXCL12P48061 AL035666.1-201ENST00000446195 348 ntBASIC1.25□□□□□ -2.21
CXCL12P48061 snoU13.6-201ENST00000458785 104 ntBASIC1.25□□□□□ -2.21
CXCL12P48061 AC007547.1-201ENST00000462177 490 ntBASIC1.25□□□□□ -2.21
CXCL12P48061 RPL9P9-202ENST00000466501 579 ntBASIC1.25□□□□□ -2.21
CXCL12P48061 AC093852.1-201ENST00000503587 266 ntBASIC1.25□□□□□ -2.21
Retrieved 100 of 98,524 protein–RNA pairs in 123.1 ms