Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 AC091874.1-201ENST00000511402 339 ntBASIC2.16□□□□□ -2.06
HNF4AP41235 MRPS17P9-201ENST00000511924 393 ntBASIC2.16□□□□□ -2.06
HNF4AP41235 ACA59.1-201ENST00000515966 143 ntBASIC2.16□□□□□ -2.06
HNF4AP41235 AC025871.1-202ENST00000518819 432 ntTSL 3 BASIC2.16□□□□□ -2.06
HNF4AP41235 AC115990.1-201ENST00000526957 301 ntBASIC2.16□□□□□ -2.06
HNF4AP41235 MIR4299-201ENST00000577899 72 ntBASIC2.16□□□□□ -2.06
HNF4AP41235 MIR4273-201ENST00000582824 84 ntBASIC2.16□□□□□ -2.06
HNF4AP41235 AL096840.1-201ENST00000603287 93 ntBASIC2.16□□□□□ -2.06
HNF4AP41235 AL080274.1-201ENST00000605565 220 ntBASIC2.16□□□□□ -2.06
HNF4AP41235 SLC39A10-201ENST00000359634 5322 ntAPPRIS P1 TSL 1 (best) BASIC2.16□□□□□ -2.06
HNF4AP41235 CEP57L1-223ENST00000523787 2522 ntAPPRIS ALT2 TSL 5 BASIC2.16□□□□□ -2.06
HNF4AP41235 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.15□□□□□ -2.06
HNF4AP41235 MT-ND4-201ENST00000361381 1378 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
HNF4AP41235 KTN1-214ENST00000554507 2057 ntTSL 1 (best) BASIC2.15□□□□□ -2.07
HNF4AP41235 AC009487.4-201ENST00000624969 3585 ntBASIC2.15□□□□□ -2.07
HNF4AP41235 Y_RNA.123-201ENST00000363338 102 ntBASIC2.15□□□□□ -2.07
HNF4AP41235 Y_RNA.132-201ENST00000363421 102 ntBASIC2.15□□□□□ -2.07
HNF4AP41235 RNU6-301P-201ENST00000384277 107 ntBASIC2.15□□□□□ -2.07
HNF4AP41235 SNORD14D-201ENST00000384390 87 ntBASIC2.15□□□□□ -2.07
HNF4AP41235 Y_RNA.533-201ENST00000384596 114 ntBASIC2.15□□□□□ -2.07
HNF4AP41235 MIR221-201ENST00000385135 110 ntBASIC2.15□□□□□ -2.07
HNF4AP41235 TRAJ34-201ENST00000390503 58 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
HNF4AP41235 SNORA48.3-201ENST00000391081 134 ntBASIC2.15□□□□□ -2.07
HNF4AP41235 SNORA75.6-201ENST00000391318 127 ntBASIC2.15□□□□□ -2.07
HNF4AP41235 HMGB3P2-201ENST00000411913 584 ntBASIC2.15□□□□□ -2.07
HNF4AP41235 SRIP3-201ENST00000413200 219 ntBASIC2.15□□□□□ -2.07
HNF4AP41235 USMG5P1-201ENST00000425964 177 ntBASIC2.15□□□□□ -2.07
HNF4AP41235 MTCO2P12-201ENST00000427426 682 ntBASIC2.15□□□□□ -2.07
HNF4AP41235 CBX3P6-201ENST00000430257 527 ntBASIC2.15□□□□□ -2.07
HNF4AP41235 LINC01628-201ENST00000444266 397 ntTSL 2 BASIC2.15□□□□□ -2.07
HNF4AP41235 AL136987.2-201ENST00000457321 684 ntTSL 3 BASIC2.15□□□□□ -2.07
HNF4AP41235 AC022447.4-201ENST00000504053 364 ntBASIC2.15□□□□□ -2.07
HNF4AP41235 RPL23AP94-201ENST00000512518 302 ntBASIC2.15□□□□□ -2.07
HNF4AP41235 CBX3P8-201ENST00000532412 525 ntBASIC2.15□□□□□ -2.07
HNF4AP41235 LINC02425-201ENST00000536217 376 ntTSL 3 BASIC2.15□□□□□ -2.07
HNF4AP41235 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC2.15□□□□□ -2.07
HNF4AP41235 AC002558.3-201ENST00000574021 401 ntTSL 3 BASIC2.15□□□□□ -2.07
HNF4AP41235 AC245748.3-201ENST00000588710 241 ntTSL 3 BASIC2.15□□□□□ -2.07
HNF4AP41235 LUZP6-201ENST00000589735 177 ntAPPRIS P1 BASIC2.15□□□□□ -2.07
HNF4AP41235 AL158827.2-201ENST00000602494 330 ntBASIC2.15□□□□□ -2.07
HNF4AP41235 AL353621.2-201ENST00000605340 133 ntBASIC2.15□□□□□ -2.07
HNF4AP41235 MIR6132-201ENST00000622083 109 ntBASIC2.15□□□□□ -2.07
HNF4AP41235 AL691447.3-201ENST00000635020 330 ntBASIC2.15□□□□□ -2.07
HNF4AP41235 SNX16-212ENST00000615066 1918 ntTSL 5 BASIC2.15□□□□□ -2.07
HNF4AP41235 VPS54-202ENST00000354504 3594 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
HNF4AP41235 Y_RNA.197-201ENST00000364004 102 ntBASIC2.14□□□□□ -2.07
HNF4AP41235 RNA5SP37-201ENST00000365420 130 ntBASIC2.14□□□□□ -2.07
HNF4AP41235 RNU6-784P-201ENST00000384330 106 ntBASIC2.14□□□□□ -2.07
HNF4AP41235 SNORA51.11-201ENST00000384442 131 ntBASIC2.14□□□□□ -2.07
HNF4AP41235 RNU6-1011P-201ENST00000384668 107 ntBASIC2.14□□□□□ -2.07
HNF4AP41235 MIR676-201ENST00000390702 67 ntBASIC2.14□□□□□ -2.07
HNF4AP41235 RN7SKP284-201ENST00000411002 343 ntBASIC2.14□□□□□ -2.07
HNF4AP41235 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC2.14□□□□□ -2.07
HNF4AP41235 FO680682.1-201ENST00000421261 345 ntTSL 3 BASIC2.14□□□□□ -2.07
HNF4AP41235 AL162400.2-201ENST00000427547 157 ntTSL 3 BASIC2.14□□□□□ -2.07
HNF4AP41235 MTCYBP6-201ENST00000441810 138 ntBASIC2.14□□□□□ -2.07
HNF4AP41235 RPL23AP6-201ENST00000446637 472 ntBASIC2.14□□□□□ -2.07
HNF4AP41235 AC079354.2-201ENST00000453523 154 ntBASIC2.14□□□□□ -2.07
HNF4AP41235 Y_RNA.639-201ENST00000458981 102 ntBASIC2.14□□□□□ -2.07
HNF4AP41235 MIR2053-201ENST00000459295 91 ntBASIC2.14□□□□□ -2.07
HNF4AP41235 AC104435.1-201ENST00000483483 166 ntBASIC2.14□□□□□ -2.07
HNF4AP41235 AC079804.2-201ENST00000490376 200 ntBASIC2.14□□□□□ -2.07
HNF4AP41235 AC114801.2-201ENST00000503825 781 ntBASIC2.14□□□□□ -2.07
HNF4AP41235 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC2.14□□□□□ -2.07
HNF4AP41235 RNU6-470P-201ENST00000515954 104 ntBASIC2.14□□□□□ -2.07
HNF4AP41235 RNU6-1170P-201ENST00000515974 106 ntBASIC2.14□□□□□ -2.07
HNF4AP41235 RNA5SP200-201ENST00000516360 103 ntBASIC2.14□□□□□ -2.07
HNF4AP41235 MRPS36P4-201ENST00000534436 298 ntBASIC2.14□□□□□ -2.07
HNF4AP41235 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC2.14□□□□□ -2.07
HNF4AP41235 ANP32BP3-201ENST00000559213 706 ntBASIC2.14□□□□□ -2.07
HNF4AP41235 MIR5696-201ENST00000578474 85 ntBASIC2.14□□□□□ -2.07
HNF4AP41235 MIR4435-1-201ENST00000582552 80 ntBASIC2.14□□□□□ -2.07
HNF4AP41235 AC005296.1-201ENST00000616145 209 ntBASIC2.14□□□□□ -2.07
HNF4AP41235 AC090971.5-201ENST00000621102 293 ntBASIC2.14□□□□□ -2.07
HNF4AP41235 AC099654.10-201ENST00000640395 161 ntBASIC2.14□□□□□ -2.07
HNF4AP41235 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC2.14□□□□□ -2.07
HNF4AP41235 MTND5P10-201ENST00000603719 1809 ntBASIC2.14□□□□□ -2.07
HNF4AP41235 AC009541.1-201ENST00000438279 2662 ntBASIC2.14□□□□□ -2.07
HNF4AP41235 APCS-201ENST00000255040 926 ntAPPRIS P1 TSL 1 (best) BASIC2.13□□□□□ -2.07
HNF4AP41235 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC2.13□□□□□ -2.07
HNF4AP41235 Y_RNA.31-201ENST00000362574 102 ntBASIC2.13□□□□□ -2.07
HNF4AP41235 RNU6-1227P-201ENST00000383981 107 ntBASIC2.13□□□□□ -2.07
HNF4AP41235 MIR559-201ENST00000385188 96 ntBASIC2.13□□□□□ -2.07
HNF4AP41235 BTF3L4P2-201ENST00000392798 346 ntBASIC2.13□□□□□ -2.07
HNF4AP41235 MIR1262-201ENST00000408276 93 ntBASIC2.13□□□□□ -2.07
HNF4AP41235 Y_RNA.597-201ENST00000410463 100 ntBASIC2.13□□□□□ -2.07
HNF4AP41235 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC2.13□□□□□ -2.07
HNF4AP41235 LINC01549-201ENST00000440664 714 ntTSL 3 BASIC2.13□□□□□ -2.07
HNF4AP41235 SNRPGP7-201ENST00000469016 106 ntBASIC2.13□□□□□ -2.07
HNF4AP41235 AC090255.1-201ENST00000495779 349 ntBASIC2.13□□□□□ -2.07
HNF4AP41235 RNU6-965P-201ENST00000516721 96 ntBASIC2.13□□□□□ -2.07
HNF4AP41235 AC005014.2-201ENST00000607795 599 ntBASIC2.13□□□□□ -2.07
HNF4AP41235 MIR6873-201ENST00000622788 63 ntBASIC2.13□□□□□ -2.07
HNF4AP41235 SNORA43.4-201ENST00000629559 138 ntBASIC2.13□□□□□ -2.07
HNF4AP41235 MIER3-204ENST00000381226 5210 ntAPPRIS ALT1 TSL 1 (best) BASIC2.13□□□□□ -2.07
HNF4AP41235 MTND5P6-201ENST00000422338 1798 ntBASIC2.13□□□□□ -2.07
HNF4AP41235 CFHR4-202ENST00000367416 2178 ntAPPRIS P1 TSL 2 BASIC2.12□□□□□ -2.07
HNF4AP41235 MUC15-202ENST00000436318 3118 ntTSL 5 BASIC2.12□□□□□ -2.07
HNF4AP41235 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC2.12□□□□□ -2.07
HNF4AP41235 CCDC148-202ENST00000409187 2523 ntAPPRIS P1 TSL 5 BASIC2.12□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 132.4 ms