Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 AL603839.4-201ENST00000624658 1005 ntBASIC-0.48□□□□□ -2.49
CUX1P39880 RNU6-97P-201ENST00000363387 104 ntBASIC-0.49□□□□□ -2.49
CUX1P39880 SNORD31B-201ENST00000364977 69 ntBASIC-0.49□□□□□ -2.49
CUX1P39880 SNORA2.2-201ENST00000365473 135 ntBASIC-0.49□□□□□ -2.49
CUX1P39880 RNU6-756P-201ENST00000383997 107 ntBASIC-0.49□□□□□ -2.49
CUX1P39880 RNU6-1207P-201ENST00000384343 107 ntBASIC-0.49□□□□□ -2.49
CUX1P39880 MIR217-201ENST00000384817 110 ntBASIC-0.49□□□□□ -2.49
CUX1P39880 SNORD41-201ENST00000386967 70 ntBASIC-0.49□□□□□ -2.49
CUX1P39880 Y_RNA.583-201ENST00000391033 113 ntBASIC-0.49□□□□□ -2.49
CUX1P39880 AL356583.2-201ENST00000426536 280 ntBASIC-0.49□□□□□ -2.49
CUX1P39880 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC-0.49□□□□□ -2.49
CUX1P39880 AC092427.1-201ENST00000439177 601 ntBASIC-0.49□□□□□ -2.49
CUX1P39880 AC093019.1-201ENST00000443135 252 ntBASIC-0.49□□□□□ -2.49
CUX1P39880 RNU6-138P-201ENST00000515952 107 ntBASIC-0.49□□□□□ -2.49
CUX1P39880 RNU2-12P-201ENST00000517216 168 ntBASIC-0.49□□□□□ -2.49
CUX1P39880 RN7SL660P-201ENST00000614852 299 ntBASIC-0.49□□□□□ -2.49
CUX1P39880 AC092813.1-201ENST00000635455 969 ntTSL 5 BASIC-0.49□□□□□ -2.49
CUX1P39880 SERPINI2-207ENST00000476257 1837 ntAPPRIS P1 TSL 5 BASIC-0.5□□□□□ -2.49
CUX1P39880 SNORA1.1-201ENST00000364671 133 ntBASIC-0.5□□□□□ -2.49
CUX1P39880 RNA5SP517-201ENST00000364724 117 ntBASIC-0.5□□□□□ -2.49
CUX1P39880 MIR301A-201ENST00000385261 86 ntBASIC-0.5□□□□□ -2.49
CUX1P39880 Y_RNA.659-201ENST00000515994 113 ntBASIC-0.5□□□□□ -2.49
CUX1P39880 AP003715.1-201ENST00000532109 435 ntTSL 3 BASIC-0.5□□□□□ -2.49
CUX1P39880 AC023538.1-201ENST00000534576 736 ntBASIC-0.5□□□□□ -2.49
CUX1P39880 HIGD1AP17-201ENST00000554576 276 ntBASIC-0.5□□□□□ -2.49
CUX1P39880 MIR8076-201ENST00000611401 83 ntBASIC-0.5□□□□□ -2.49
CUX1P39880 AL391903.3-201ENST00000612158 163 ntBASIC-0.5□□□□□ -2.49
CUX1P39880 AC244093.3-201ENST00000615419 411 ntTSL 3 BASIC-0.5□□□□□ -2.49
CUX1P39880 AL513423.1-201ENST00000621695 132 ntBASIC-0.5□□□□□ -2.49
CUX1P39880 MIR1-1-201ENST00000362147 71 ntBASIC-0.51□□□□□ -2.49
CUX1P39880 RNU4-15P-201ENST00000362613 141 ntBASIC-0.51□□□□□ -2.49
CUX1P39880 RNU6-199P-201ENST00000362954 107 ntBASIC-0.51□□□□□ -2.49
CUX1P39880 RNU6-839P-201ENST00000363347 108 ntBASIC-0.51□□□□□ -2.49
CUX1P39880 SNORD114-12-201ENST00000365400 75 ntBASIC-0.51□□□□□ -2.49
CUX1P39880 RNA5SP323-201ENST00000391094 133 ntBASIC-0.51□□□□□ -2.49
CUX1P39880 AC016909.1-201ENST00000415916 166 ntBASIC-0.51□□□□□ -2.49
CUX1P39880 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC-0.51□□□□□ -2.49
CUX1P39880 AC009313.1-201ENST00000425470 503 ntTSL 3 BASIC-0.51□□□□□ -2.49
CUX1P39880 MTATP6P23-201ENST00000440153 476 ntBASIC-0.51□□□□□ -2.49
CUX1P39880 snoU109.2-201ENST00000459316 135 ntBASIC-0.51□□□□□ -2.49
CUX1P39880 AC010469.2-201ENST00000496412 480 ntBASIC-0.51□□□□□ -2.49
CUX1P39880 AC093292.1-201ENST00000505050 449 ntTSL 3 BASIC-0.51□□□□□ -2.49
CUX1P39880 AC145141.2-201ENST00000518473 501 ntTSL 3 BASIC-0.51□□□□□ -2.49
CUX1P39880 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC-0.51□□□□□ -2.49
CUX1P39880 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC-0.51□□□□□ -2.49
CUX1P39880 AL390123.1-201ENST00000603216 237 ntBASIC-0.51□□□□□ -2.49
CUX1P39880 AL136363.2-201ENST00000604173 851 ntBASIC-0.51□□□□□ -2.49
CUX1P39880 AC006157.1-201ENST00000611750 366 ntBASIC-0.51□□□□□ -2.49
CUX1P39880 AL121904.1-201ENST00000611894 948 ntTSL 5 BASIC-0.51□□□□□ -2.49
CUX1P39880 PCGEM1.1-201ENST00000613431 131 ntBASIC-0.51□□□□□ -2.49
CUX1P39880 RNU6-932P-201ENST00000391108 106 ntBASIC-0.52□□□□□ -2.49
CUX1P39880 MTND4P25-201ENST00000441039 533 ntBASIC-0.52□□□□□ -2.49
CUX1P39880 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC-0.52□□□□□ -2.49
CUX1P39880 SNORA31.10-201ENST00000516482 106 ntBASIC-0.52□□□□□ -2.49
CUX1P39880 AC105185.1-201ENST00000518705 535 ntBASIC-0.52□□□□□ -2.49
CUX1P39880 MIR1273C-201ENST00000578669 77 ntBASIC-0.52□□□□□ -2.49
CUX1P39880 RNU6-216P-201ENST00000363282 104 ntBASIC-0.53□□□□□ -2.49
CUX1P39880 RPS20P2-201ENST00000402520 389 ntBASIC-0.53□□□□□ -2.49
CUX1P39880 MIR1305-201ENST00000408300 86 ntBASIC-0.53□□□□□ -2.49
CUX1P39880 AL391704.1-203ENST00000414903 462 ntTSL 3 BASIC-0.53□□□□□ -2.49
CUX1P39880 AL365338.1-201ENST00000422282 858 ntBASIC-0.53□□□□□ -2.49
CUX1P39880 MED13P1-201ENST00000428342 171 ntBASIC-0.53□□□□□ -2.49
CUX1P39880 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC-0.53□□□□□ -2.49
CUX1P39880 DPP10-AS2-201ENST00000446992 624 ntTSL 5 BASIC-0.53□□□□□ -2.49
CUX1P39880 RNU7-14P-201ENST00000459331 62 ntBASIC-0.53□□□□□ -2.49
CUX1P39880 AC027343.1-201ENST00000504765 407 ntTSL 4 BASIC-0.53□□□□□ -2.49
CUX1P39880 AC022868.1-201ENST00000517767 391 ntBASIC-0.53□□□□□ -2.49
CUX1P39880 AC087276.4-201ENST00000530042 444 ntTSL 3 BASIC-0.53□□□□□ -2.49
CUX1P39880 AC021231.3-201ENST00000558497 370 ntBASIC-0.53□□□□□ -2.49
CUX1P39880 AP001033.2-201ENST00000609701 1003 ntBASIC-0.53□□□□□ -2.49
CUX1P39880 MIR548AZ-201ENST00000616567 95 ntBASIC-0.53□□□□□ -2.49
CUX1P39880 uc_338.36-201ENST00000622331 158 ntBASIC-0.53□□□□□ -2.49
CUX1P39880 SNORA32.2-201ENST00000384049 122 ntBASIC-0.54□□□□□ -2.5
CUX1P39880 RNU6-40P-201ENST00000384254 107 ntBASIC-0.54□□□□□ -2.5
CUX1P39880 MIR196A2-201ENST00000385189 110 ntBASIC-0.54□□□□□ -2.5
CUX1P39880 SNORD75.1-201ENST00000408373 60 ntBASIC-0.54□□□□□ -2.5
CUX1P39880 RNU6ATAC25P-201ENST00000408798 117 ntBASIC-0.54□□□□□ -2.5
CUX1P39880 RNA5SP118-201ENST00000410385 109 ntBASIC-0.54□□□□□ -2.5
CUX1P39880 RNU2-59P-201ENST00000410482 191 ntBASIC-0.54□□□□□ -2.5
CUX1P39880 MTCO2P8-201ENST00000412213 658 ntBASIC-0.54□□□□□ -2.5
CUX1P39880 AL513185.1-201ENST00000431638 162 ntTSL 5 BASIC-0.54□□□□□ -2.5
CUX1P39880 AL133217.1-201ENST00000450980 425 ntBASIC-0.54□□□□□ -2.5
CUX1P39880 AC010531.2-201ENST00000465012 153 ntBASIC-0.54□□□□□ -2.5
CUX1P39880 MTND3P5-201ENST00000512798 333 ntBASIC-0.54□□□□□ -2.5
CUX1P39880 RNA5SP268-201ENST00000516828 124 ntBASIC-0.54□□□□□ -2.5
CUX1P39880 MIR4300-201ENST00000581016 96 ntBASIC-0.54□□□□□ -2.5
CUX1P39880 AL162424.1-201ENST00000602325 221 ntBASIC-0.54□□□□□ -2.5
CUX1P39880 AC004832.4-201ENST00000608952 331 ntBASIC-0.54□□□□□ -2.5
CUX1P39880 NUCB2-220ENST00000622082 1369 ntAPPRIS P2 TSL 5 BASIC-0.54□□□□□ -2.5
CUX1P39880 RNU6-1099P-201ENST00000363533 107 ntBASIC-0.54□□□□□ -2.5
CUX1P39880 SNORD113.3-201ENST00000364630 78 ntBASIC-0.54□□□□□ -2.5
CUX1P39880 Y_RNA.514-201ENST00000384528 112 ntBASIC-0.54□□□□□ -2.5
CUX1P39880 RNU6-440P-201ENST00000390882 105 ntBASIC-0.54□□□□□ -2.5
CUX1P39880 RNA5SP109-201ENST00000391010 116 ntBASIC-0.54□□□□□ -2.5
CUX1P39880 MIR892B-201ENST00000401279 77 ntBASIC-0.54□□□□□ -2.5
CUX1P39880 MIR1827-201ENST00000408549 66 ntBASIC-0.54□□□□□ -2.5
CUX1P39880 RNU6-994P-201ENST00000410507 111 ntBASIC-0.54□□□□□ -2.5
CUX1P39880 RNU6-1025P-201ENST00000410629 104 ntBASIC-0.54□□□□□ -2.5
CUX1P39880 AC016925.1-201ENST00000458303 298 ntBASIC-0.54□□□□□ -2.5
CUX1P39880 RNU1-117P-201ENST00000517041 158 ntBASIC-0.54□□□□□ -2.5
Retrieved 100 of 98,524 protein–RNA pairs in 172.4 ms