Protein–RNA interactions for Protein: P39060

COL18A1, Collagen alpha-1(XVIII) chain, humanhuman

Predictions only

Length 1,754 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1P39060 AC012507.3-201ENST00000603556 477 ntBASIC0.88□□□□□ -2.27
COL18A1P39060 AP001506.1-201ENST00000615444 211 ntBASIC0.88□□□□□ -2.27
COL18A1P39060 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC0.88□□□□□ -2.27
COL18A1P39060 AC100821.1-201ENST00000523153 2479 ntBASIC0.88□□□□□ -2.27
COL18A1P39060 MIR26B-201ENST00000362251 77 ntBASIC0.88□□□□□ -2.27
COL18A1P39060 RNU6-862P-201ENST00000362804 105 ntBASIC0.88□□□□□ -2.27
COL18A1P39060 SNORD32A-201ENST00000364805 84 ntBASIC0.88□□□□□ -2.27
COL18A1P39060 RNU6-439P-201ENST00000384188 106 ntBASIC0.88□□□□□ -2.27
COL18A1P39060 MIR618-201ENST00000385287 98 ntBASIC0.88□□□□□ -2.27
COL18A1P39060 SNORD70.1-201ENST00000391007 85 ntBASIC0.88□□□□□ -2.27
COL18A1P39060 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC0.88□□□□□ -2.27
COL18A1P39060 LINC01675-201ENST00000426519 701 ntTSL 3 BASIC0.88□□□□□ -2.27
COL18A1P39060 PRPS1P1-201ENST00000445305 876 ntBASIC0.88□□□□□ -2.27
COL18A1P39060 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC0.88□□□□□ -2.27
COL18A1P39060 AC092958.2-201ENST00000476987 492 ntTSL 3 BASIC0.88□□□□□ -2.27
COL18A1P39060 LINC02220-201ENST00000510065 270 ntTSL 5 BASIC0.88□□□□□ -2.27
COL18A1P39060 AC105417.1-201ENST00000514691 285 ntBASIC0.88□□□□□ -2.27
COL18A1P39060 RNU6-1098P-201ENST00000516772 96 ntBASIC0.88□□□□□ -2.27
COL18A1P39060 RNA5SP503-201ENST00000517047 117 ntBASIC0.88□□□□□ -2.27
COL18A1P39060 AC021231.3-201ENST00000558497 370 ntBASIC0.88□□□□□ -2.27
COL18A1P39060 AC005668.1-201ENST00000571142 476 ntBASIC0.88□□□□□ -2.27
COL18A1P39060 AC245014.2-201ENST00000603689 287 ntBASIC0.88□□□□□ -2.27
COL18A1P39060 AC246785.4-201ENST00000605374 287 ntBASIC0.88□□□□□ -2.27
COL18A1P39060 AC064807.4-201ENST00000607201 407 ntBASIC0.88□□□□□ -2.27
COL18A1P39060 AL078604.3-201ENST00000615580 211 ntBASIC0.88□□□□□ -2.27
COL18A1P39060 AC068205.3-201ENST00000636385 468 ntBASIC0.88□□□□□ -2.27
COL18A1P39060 UBE3A-225ENST00000636667 5726 ntTSL 5 BASIC0.87□□□□□ -2.27
COL18A1P39060 RNA5SP347-201ENST00000362445 119 ntBASIC0.87□□□□□ -2.27
COL18A1P39060 RNU4-48P-201ENST00000365559 182 ntBASIC0.87□□□□□ -2.27
COL18A1P39060 SNORA40.3-201ENST00000390964 122 ntBASIC0.87□□□□□ -2.27
COL18A1P39060 PIGFP2-201ENST00000421400 651 ntBASIC0.87□□□□□ -2.27
COL18A1P39060 AC093639.1-201ENST00000441026 473 ntTSL 2 BASIC0.87□□□□□ -2.27
COL18A1P39060 AC099566.1-201ENST00000442558 479 ntTSL 3 BASIC0.87□□□□□ -2.27
COL18A1P39060 AC005178.1-201ENST00000508392 440 ntBASIC0.87□□□□□ -2.27
COL18A1P39060 SNORD60.2-201ENST00000516883 86 ntBASIC0.87□□□□□ -2.27
COL18A1P39060 AC069113.1-201ENST00000517763 267 ntBASIC0.87□□□□□ -2.27
COL18A1P39060 SNHG6-202ENST00000520619 479 ntTSL 3 BASIC0.87□□□□□ -2.27
COL18A1P39060 CLPTM1LP1-201ENST00000604519 484 ntBASIC0.87□□□□□ -2.27
COL18A1P39060 AC005520.5-201ENST00000613926 164 ntBASIC0.87□□□□□ -2.27
COL18A1P39060 SPTSSB-205ENST00000620149 231 ntAPPRIS P1 BASIC0.87□□□□□ -2.27
COL18A1P39060 AL136221.1-201ENST00000621449 509 ntBASIC0.87□□□□□ -2.27
COL18A1P39060 MIR8063-201ENST00000621930 81 ntBASIC0.87□□□□□ -2.27
COL18A1P39060 AC022418.1-201ENST00000624118 445 ntBASIC0.87□□□□□ -2.27
COL18A1P39060 AL603839.4-201ENST00000624658 1005 ntBASIC0.87□□□□□ -2.27
COL18A1P39060 Y_RNA.367-201ENST00000365544 101 ntBASIC0.86□□□□□ -2.27
COL18A1P39060 SNORA32.2-201ENST00000384049 122 ntBASIC0.86□□□□□ -2.27
COL18A1P39060 RPL23AP95-201ENST00000426806 265 ntBASIC0.86□□□□□ -2.27
COL18A1P39060 AC008568.1-203ENST00000433406 765 ntTSL 3 BASIC0.86□□□□□ -2.27
COL18A1P39060 AC112518.1-201ENST00000436089 575 ntTSL 4 BASIC0.86□□□□□ -2.27
COL18A1P39060 AL135790.2-201ENST00000437701 267 ntBASIC0.86□□□□□ -2.27
COL18A1P39060 MTCYBP1-201ENST00000454315 1119 ntBASIC0.86□□□□□ -2.27
COL18A1P39060 SNORD42A-201ENST00000459584 64 ntBASIC0.86□□□□□ -2.27
COL18A1P39060 AC092944.1-205ENST00000494885 517 ntTSL 4 BASIC0.86□□□□□ -2.27
COL18A1P39060 AK3P2-201ENST00000507976 429 ntBASIC0.86□□□□□ -2.27
COL18A1P39060 AC145146.2-202ENST00000508118 326 ntTSL 3 BASIC0.86□□□□□ -2.27
COL18A1P39060 CSN1S2AP-204ENST00000512167 671 ntTSL 3 BASIC0.86□□□□□ -2.27
COL18A1P39060 AC016885.2-201ENST00000522598 261 ntTSL 3 BASIC0.86□□□□□ -2.27
COL18A1P39060 AC234772.3-201ENST00000602277 528 ntBASIC0.86□□□□□ -2.27
COL18A1P39060 AC069114.2-201ENST00000604699 304 ntBASIC0.86□□□□□ -2.27
COL18A1P39060 AC006566.1-201ENST00000608943 513 ntBASIC0.86□□□□□ -2.27
COL18A1P39060 AC004223.4-201ENST00000612426 332 ntBASIC0.86□□□□□ -2.27
COL18A1P39060 RNU6-1026P-201ENST00000384465 108 ntBASIC0.85□□□□□ -2.27
COL18A1P39060 SNORA12.2-201ENST00000391040 156 ntBASIC0.85□□□□□ -2.27
COL18A1P39060 SNAP23P1-201ENST00000433229 246 ntBASIC0.85□□□□□ -2.27
COL18A1P39060 AC069257.2-201ENST00000441819 155 ntBASIC0.85□□□□□ -2.27
COL18A1P39060 SCARNA18-201ENST00000459004 134 ntBASIC0.85□□□□□ -2.27
COL18A1P39060 AC007547.1-201ENST00000462177 490 ntBASIC0.85□□□□□ -2.27
COL18A1P39060 RPL30P7-201ENST00000479312 323 ntBASIC0.85□□□□□ -2.27
COL18A1P39060 AC108935.1-201ENST00000504874 518 ntTSL 2 BASIC0.85□□□□□ -2.27
COL18A1P39060 AC103957.1-202ENST00000519814 735 ntTSL 3 BASIC0.85□□□□□ -2.27
COL18A1P39060 AC022695.3-201ENST00000523385 478 ntTSL 3 BASIC0.85□□□□□ -2.27
COL18A1P39060 AP003034.1-201ENST00000534621 422 ntBASIC0.85□□□□□ -2.27
COL18A1P39060 ZNF321P-202ENST00000550843 495 ntBASIC0.85□□□□□ -2.27
COL18A1P39060 AC090517.1-201ENST00000569307 266 ntBASIC0.85□□□□□ -2.27
COL18A1P39060 AC078795.3-201ENST00000602913 472 ntBASIC0.85□□□□□ -2.27
COL18A1P39060 AC092354.1-201ENST00000606057 376 ntBASIC0.85□□□□□ -2.27
COL18A1P39060 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC0.85□□□□□ -2.27
COL18A1P39060 MIR340-201ENST00000362125 95 ntBASIC0.85□□□□□ -2.27
COL18A1P39060 RNU6-552P-201ENST00000362869 119 ntBASIC0.85□□□□□ -2.27
COL18A1P39060 SNORA26.3-201ENST00000391119 136 ntBASIC0.85□□□□□ -2.27
COL18A1P39060 FGFR1OP2P1-201ENST00000395943 500 ntBASIC0.85□□□□□ -2.27
COL18A1P39060 RNU6-195P-201ENST00000411352 109 ntBASIC0.85□□□□□ -2.27
COL18A1P39060 RPL37P10-201ENST00000412884 288 ntBASIC0.85□□□□□ -2.27
COL18A1P39060 MTCO3P29-201ENST00000432119 779 ntBASIC0.85□□□□□ -2.27
COL18A1P39060 AC027119.1-201ENST00000440877 241 ntBASIC0.85□□□□□ -2.27
COL18A1P39060 AL162395.1-201ENST00000457882 422 ntBASIC0.85□□□□□ -2.27
COL18A1P39060 AC016925.1-201ENST00000458303 298 ntBASIC0.85□□□□□ -2.27
COL18A1P39060 AC008539.1-201ENST00000507653 482 ntTSL 3 BASIC0.85□□□□□ -2.27
COL18A1P39060 AL136537.1-201ENST00000508199 538 ntTSL 3 BASIC0.85□□□□□ -2.27
COL18A1P39060 AC010420.1-201ENST00000515077 509 ntTSL 3 BASIC0.85□□□□□ -2.27
COL18A1P39060 RNU6-1129P-201ENST00000515964 104 ntBASIC0.85□□□□□ -2.27
COL18A1P39060 SNORD27.1-201ENST00000516319 72 ntBASIC0.85□□□□□ -2.27
COL18A1P39060 SNORA25.17-201ENST00000517184 124 ntBASIC0.85□□□□□ -2.27
COL18A1P39060 AC084816.1-207ENST00000538317 584 ntTSL 4 BASIC0.85□□□□□ -2.27
COL18A1P39060 AC103996.1-201ENST00000555468 102 ntBASIC0.85□□□□□ -2.27
COL18A1P39060 BNIP3P39-201ENST00000601077 554 ntBASIC0.85□□□□□ -2.27
COL18A1P39060 AC243829.3-201ENST00000622177 108 ntBASIC0.85□□□□□ -2.27
COL18A1P39060 PLD1-217ENST00000627725 174 ntTSL 5 BASIC0.85□□□□□ -2.27
COL18A1P39060 Y_RNA.60-201ENST00000362831 98 ntBASIC0.84□□□□□ -2.27
COL18A1P39060 RNU2-29P-201ENST00000410423 189 ntBASIC0.84□□□□□ -2.27
Retrieved 100 of 98,524 protein–RNA pairs in 109.2 ms