Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 MTND5P41-201ENST00000517498 206 ntBASIC3.1□□□□□ -1.91
MSX2P35548 CYCSP23-201ENST00000519781 313 ntBASIC3.1□□□□□ -1.91
MSX2P35548 AC107973.1-201ENST00000530249 576 ntTSL 4 BASIC3.1□□□□□ -1.91
MSX2P35548 AL139193.1-201ENST00000554967 539 ntTSL 4 BASIC3.1□□□□□ -1.91
MSX2P35548 AC005828.6-201ENST00000606610 232 ntBASIC3.1□□□□□ -1.91
MSX2P35548 AC107294.3-201ENST00000609211 526 ntBASIC3.1□□□□□ -1.91
MSX2P35548 AL121772.2-201ENST00000614331 297 ntBASIC3.1□□□□□ -1.91
MSX2P35548 LINC01359-207ENST00000634799 487 ntTSL 5 BASIC3.1□□□□□ -1.91
MSX2P35548 MBNL1-206ENST00000357472 5256 ntTSL 5 BASIC3.1□□□□□ -1.91
MSX2P35548 AL359854.1-201ENST00000614203 1594 ntBASIC3.09□□□□□ -1.91
MSX2P35548 RMDN2-203ENST00000402091 1973 ntTSL 2 BASIC3.09□□□□□ -1.91
MSX2P35548 ATF2-204ENST00000409437 3697 ntTSL 5 BASIC3.09□□□□□ -1.91
MSX2P35548 RNA5SP124-201ENST00000362739 110 ntBASIC3.09□□□□□ -1.91
MSX2P35548 RNU4-80P-201ENST00000363200 141 ntBASIC3.09□□□□□ -1.91
MSX2P35548 RNU5F-3P-201ENST00000363767 117 ntBASIC3.09□□□□□ -1.91
MSX2P35548 RNA5SP240-201ENST00000365355 128 ntBASIC3.09□□□□□ -1.91
MSX2P35548 RNU6-245P-201ENST00000384020 107 ntBASIC3.09□□□□□ -1.91
MSX2P35548 RNU6-793P-201ENST00000384233 104 ntBASIC3.09□□□□□ -1.91
MSX2P35548 RNU6-804P-201ENST00000384286 107 ntBASIC3.09□□□□□ -1.91
MSX2P35548 SNORA46-201ENST00000384762 135 ntBASIC3.09□□□□□ -1.91
MSX2P35548 OOSP1P1-201ENST00000423265 274 ntBASIC3.09□□□□□ -1.91
MSX2P35548 AL606753.1-201ENST00000427435 87 ntBASIC3.09□□□□□ -1.91
MSX2P35548 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC3.09□□□□□ -1.91
MSX2P35548 AC007179.2-207ENST00000435557 556 ntTSL 4 BASIC3.09□□□□□ -1.91
MSX2P35548 AC012308.1-201ENST00000451232 178 ntBASIC3.09□□□□□ -1.91
MSX2P35548 RNU6-1219P-201ENST00000516143 112 ntBASIC3.09□□□□□ -1.91
MSX2P35548 RNU6-191P-201ENST00000516295 94 ntBASIC3.09□□□□□ -1.91
MSX2P35548 RNA5SP380-201ENST00000517190 98 ntBASIC3.09□□□□□ -1.91
MSX2P35548 IGKV2-26-201ENST00000518305 343 ntBASIC3.09□□□□□ -1.91
MSX2P35548 AC115990.1-201ENST00000526957 301 ntBASIC3.09□□□□□ -1.91
MSX2P35548 AP002001.1-203ENST00000534002 267 ntBASIC3.09□□□□□ -1.91
MSX2P35548 POC1B-211ENST00000549504 581 ntTSL 5 BASIC3.09□□□□□ -1.91
MSX2P35548 AC005520.5-201ENST00000613926 164 ntBASIC3.09□□□□□ -1.91
MSX2P35548 AC110079.1-202ENST00000635213 138 ntBASIC3.09□□□□□ -1.91
MSX2P35548 MIR3199-2-201ENST00000636243 86 ntBASIC3.09□□□□□ -1.91
MSX2P35548 SNORD98-201ENST00000636377 67 ntBASIC3.09□□□□□ -1.91
MSX2P35548 hsa-mir-548d-1.1-201ENST00000636914 97 ntBASIC3.09□□□□□ -1.91
MSX2P35548 TNNI3K-201ENST00000326637 3001 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.91
MSX2P35548 IKZF2-213ENST00000457361 9350 ntTSL 5 BASIC3.09□□□□□ -1.92
MSX2P35548 ELF1-201ENST00000239882 3566 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
MSX2P35548 ARHGAP12-201ENST00000311380 4625 ntTSL 1 (best) BASIC3.09□□□□□ -1.92
MSX2P35548 AC002543.1-201ENST00000299783 1954 ntBASIC3.09□□□□□ -1.92
MSX2P35548 EVI2B-201ENST00000330927 1999 ntAPPRIS P1 TSL 1 (best) BASIC3.09□□□□□ -1.92
MSX2P35548 CATSPERB-201ENST00000256343 3623 ntAPPRIS P2 TSL 1 (best) BASIC3.08□□□□□ -1.92
MSX2P35548 AGTR1-204ENST00000418473 2071 ntTSL 5 BASIC3.08□□□□□ -1.92
MSX2P35548 SHOC2-201ENST00000265277 3691 ntTSL 2 BASIC3.08□□□□□ -1.92
MSX2P35548 OR9G4-203ENST00000641581 2603 ntAPPRIS P1 BASIC3.08□□□□□ -1.92
MSX2P35548 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
MSX2P35548 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.08□□□□□ -1.92
MSX2P35548 PHF6-201ENST00000332070 4759 ntAPPRIS P2 TSL 1 (best) BASIC3.08□□□□□ -1.92
MSX2P35548 VSTM2A-OT1-201ENST00000456049 3031 ntTSL 1 (best) BASIC3.08□□□□□ -1.92
MSX2P35548 SNORA63.1-201ENST00000362493 131 ntBASIC3.08□□□□□ -1.92
MSX2P35548 RNU6-525P-201ENST00000363685 104 ntBASIC3.08□□□□□ -1.92
MSX2P35548 RNA5SP139-201ENST00000364340 117 ntBASIC3.08□□□□□ -1.92
MSX2P35548 Y_RNA.304-201ENST00000365011 112 ntBASIC3.08□□□□□ -1.92
MSX2P35548 SNORA72.2-201ENST00000365028 127 ntBASIC3.08□□□□□ -1.92
MSX2P35548 Y_RNA.308-201ENST00000365043 101 ntBASIC3.08□□□□□ -1.92
MSX2P35548 SNORD17-201ENST00000390930 237 ntBASIC3.08□□□□□ -1.92
MSX2P35548 CYCSP48-201ENST00000417124 323 ntBASIC3.08□□□□□ -1.92
MSX2P35548 RPL23AP83-201ENST00000434984 473 ntBASIC3.08□□□□□ -1.92
MSX2P35548 AL138900.1-201ENST00000449345 399 ntTSL 3 BASIC3.08□□□□□ -1.92
MSX2P35548 AL121594.1-201ENST00000475906 575 ntBASIC3.08□□□□□ -1.92
MSX2P35548 RPS29P26-201ENST00000477483 171 ntBASIC3.08□□□□□ -1.92
MSX2P35548 TRAPPC2P7-201ENST00000509650 231 ntBASIC3.08□□□□□ -1.92
MSX2P35548 RNU6-346P-201ENST00000516288 111 ntBASIC3.08□□□□□ -1.92
MSX2P35548 AC107886.1-201ENST00000526935 516 ntTSL 3 BASIC3.08□□□□□ -1.92
MSX2P35548 CYP4A27P-201ENST00000567218 190 ntBASIC3.08□□□□□ -1.92
MSX2P35548 MIR3144-201ENST00000579460 79 ntBASIC3.08□□□□□ -1.92
MSX2P35548 MIR3145-201ENST00000580727 82 ntBASIC3.08□□□□□ -1.92
MSX2P35548 AL356575.1-201ENST00000603008 283 ntBASIC3.08□□□□□ -1.92
MSX2P35548 AL162713.1-201ENST00000604480 262 ntBASIC3.08□□□□□ -1.92
MSX2P35548 TEX41-243ENST00000614173 190 ntTSL 5 BASIC3.08□□□□□ -1.92
MSX2P35548 AC091932.3-201ENST00000624223 323 ntBASIC3.08□□□□□ -1.92
MSX2P35548 TEX41-300ENST00000631048 69 ntTSL 5 BASIC3.08□□□□□ -1.92
MSX2P35548 AC099654.7-201ENST00000635788 2127 ntBASIC3.08□□□□□ -1.92
MSX2P35548 FAM35CP-201ENST00000554755 2470 ntBASIC3.08□□□□□ -1.92
MSX2P35548 DCUN1D1-208ENST00000632685 3147 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
MSX2P35548 MIR133A1HG-202ENST00000581072 4226 ntTSL 1 (best) BASIC3.07□□□□□ -1.92
MSX2P35548 ANKAR-209ENST00000520309 4410 ntAPPRIS P1 TSL 5 BASIC3.07□□□□□ -1.92
MSX2P35548 RNU6-653P-201ENST00000363074 106 ntBASIC3.07□□□□□ -1.92
MSX2P35548 RNU1-105P-201ENST00000363470 161 ntBASIC3.07□□□□□ -1.92
MSX2P35548 Y_RNA.498-201ENST00000384460 102 ntBASIC3.07□□□□□ -1.92
MSX2P35548 AL512633.1-201ENST00000399931 655 ntBASIC3.07□□□□□ -1.92
MSX2P35548 RNA5SP229-201ENST00000410809 99 ntBASIC3.07□□□□□ -1.92
MSX2P35548 RNU6-1135P-201ENST00000411083 103 ntBASIC3.07□□□□□ -1.92
MSX2P35548 AL359195.1-201ENST00000416657 339 ntTSL 3 BASIC3.07□□□□□ -1.92
MSX2P35548 IFNA11P-201ENST00000446352 526 ntBASIC3.07□□□□□ -1.92
MSX2P35548 RPS27P26-201ENST00000494583 239 ntBASIC3.07□□□□□ -1.92
MSX2P35548 AC093663.1-201ENST00000497190 394 ntBASIC3.07□□□□□ -1.92
MSX2P35548 AIG1P1-201ENST00000503376 148 ntBASIC3.07□□□□□ -1.92
MSX2P35548 AC093893.1-201ENST00000505781 510 ntTSL 5 BASIC3.07□□□□□ -1.92
MSX2P35548 AC139720.2-201ENST00000514766 440 ntTSL 2 BASIC3.07□□□□□ -1.92
MSX2P35548 RNU5F-2P-201ENST00000516066 82 ntBASIC3.07□□□□□ -1.92
MSX2P35548 AP005660.1-201ENST00000522972 293 ntBASIC3.07□□□□□ -1.92
MSX2P35548 MIR3136-201ENST00000583498 78 ntBASIC3.07□□□□□ -1.92
MSX2P35548 AC091152.3-201ENST00000604227 325 ntBASIC3.07□□□□□ -1.92
MSX2P35548 AC004467.1-201ENST00000615678 330 ntBASIC3.07□□□□□ -1.92
MSX2P35548 ZEB2_AS1_1.1-201ENST00000621504 128 ntBASIC3.07□□□□□ -1.92
MSX2P35548 snoU18.1-201ENST00000629629 71 ntBASIC3.07□□□□□ -1.92
MSX2P35548 PRKG2-206ENST00000545647 3852 ntTSL 5 BASIC3.07□□□□□ -1.92
Retrieved 100 of 98,524 protein–RNA pairs in 125.1 ms