Protein–RNA interactions for Protein: P31249

HOXD3, Homeobox protein Hox-D3, humanhuman

Predicted RBP Predictions only

Length 432 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3P31249 AC100781.1-201ENST00000597142 383 ntTSL 3 BASIC2.39□□□□□ -2.03
HOXD3P31249 AC006023.1-201ENST00000603944 259 ntBASIC2.39□□□□□ -2.03
HOXD3P31249 Y_RNA.772-201ENST00000606692 102 ntBASIC2.39□□□□□ -2.03
HOXD3P31249 AC005520.5-201ENST00000613926 164 ntBASIC2.39□□□□□ -2.03
HOXD3P31249 AC023490.1-201ENST00000614584 375 ntTSL 2 BASIC2.39□□□□□ -2.03
HOXD3P31249 AC011718.1-201ENST00000622906 375 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
HOXD3P31249 MIR7515-201ENST00000637837 67 ntBASIC2.39□□□□□ -2.03
HOXD3P31249 MIR622-201ENST00000638396 96 ntBASIC2.39□□□□□ -2.03
HOXD3P31249 IL23R-205ENST00000637002 2208 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
HOXD3P31249 FAM184A-202ENST00000352896 3700 ntAPPRIS ALT1 TSL 1 (best) BASIC2.39□□□□□ -2.03
HOXD3P31249 VPS13A-206ENST00000376646 2262 ntTSL 5 BASIC2.39□□□□□ -2.03
HOXD3P31249 LUZP4-201ENST00000371920 1701 ntAPPRIS P2 TSL 1 (best) BASIC2.39□□□□□ -2.03
HOXD3P31249 CACNB4-228ENST00000636598 7808 ntTSL 5 BASIC2.39□□□□□ -2.03
HOXD3P31249 DPY19L2P1-203ENST00000458672 3347 ntTSL 1 (best) BASIC2.39□□□□□ -2.03
HOXD3P31249 CHD9-218ENST00000566029 13110 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
HOXD3P31249 ZMYM1-210ENST00000611874 4466 ntAPPRIS P1 TSL 2 BASIC2.38□□□□□ -2.03
HOXD3P31249 UBA5-201ENST00000264991 2850 ntTSL 5 BASIC2.38□□□□□ -2.03
HOXD3P31249 RNU6-727P-201ENST00000363592 107 ntBASIC2.38□□□□□ -2.03
HOXD3P31249 SNORA71.1-201ENST00000364523 117 ntBASIC2.38□□□□□ -2.03
HOXD3P31249 RNU6-102P-201ENST00000384485 104 ntBASIC2.38□□□□□ -2.03
HOXD3P31249 Y_RNA.556-201ENST00000384677 113 ntBASIC2.38□□□□□ -2.03
HOXD3P31249 Y_RNA.602-201ENST00000410535 92 ntBASIC2.38□□□□□ -2.03
HOXD3P31249 AC112220.1-201ENST00000434628 355 ntBASIC2.38□□□□□ -2.03
HOXD3P31249 AC020743.3-201ENST00000440351 360 ntTSL 3 BASIC2.38□□□□□ -2.03
HOXD3P31249 RPS3P1-201ENST00000456781 192 ntBASIC2.38□□□□□ -2.03
HOXD3P31249 AC073901.1-201ENST00000462471 408 ntBASIC2.38□□□□□ -2.03
HOXD3P31249 RPL26P26-201ENST00000480251 434 ntBASIC2.38□□□□□ -2.03
HOXD3P31249 AC140059.1-201ENST00000489238 361 ntBASIC2.38□□□□□ -2.03
HOXD3P31249 MTND1P19-201ENST00000511780 315 ntBASIC2.38□□□□□ -2.03
HOXD3P31249 AC021491.3-201ENST00000513378 156 ntTSL 3 BASIC2.38□□□□□ -2.03
HOXD3P31249 SNORA64.4-201ENST00000516632 81 ntBASIC2.38□□□□□ -2.03
HOXD3P31249 RNA5SP54-201ENST00000516951 92 ntBASIC2.38□□□□□ -2.03
HOXD3P31249 SCARNA20.6-201ENST00000517251 106 ntBASIC2.38□□□□□ -2.03
HOXD3P31249 HSPE1P18-201ENST00000517602 280 ntBASIC2.38□□□□□ -2.03
HOXD3P31249 AC008115.2-201ENST00000539988 241 ntTSL 3 BASIC2.38□□□□□ -2.03
HOXD3P31249 AP005062.1-201ENST00000581502 607 ntTSL 3 BASIC2.38□□□□□ -2.03
HOXD3P31249 AC022335.1-204ENST00000590779 600 ntAPPRIS ALT2 TSL 2 BASIC2.38□□□□□ -2.03
HOXD3P31249 RPL30P11-203ENST00000598995 310 ntBASIC2.38□□□□□ -2.03
HOXD3P31249 AC010999.1-201ENST00000611856 324 ntBASIC2.38□□□□□ -2.03
HOXD3P31249 MIR376A1-201ENST00000616574 68 ntBASIC2.38□□□□□ -2.03
HOXD3P31249 ST7-OT4_2.1-201ENST00000619089 172 ntBASIC2.38□□□□□ -2.03
HOXD3P31249 PIK3C2G-202ENST00000433979 4840 ntAPPRIS P1 TSL 5 BASIC2.38□□□□□ -2.03
HOXD3P31249 ZNF705G-201ENST00000400156 3644 ntAPPRIS P1 TSL 2 BASIC2.38□□□□□ -2.03
HOXD3P31249 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC2.38□□□□□ -2.03
HOXD3P31249 LINC02555-201ENST00000563933 1951 ntBASIC2.38□□□□□ -2.03
HOXD3P31249 BCLAF1-205ENST00000527536 5371 ntTSL 5 BASIC2.37□□□□□ -2.03
HOXD3P31249 ARHGAP11A-207ENST00000565905 3318 ntTSL 2 BASIC2.37□□□□□ -2.03
HOXD3P31249 BX322639.1-202ENST00000423987 2213 ntBASIC2.37□□□□□ -2.03
HOXD3P31249 N4BP2L2-205ENST00000446957 2071 ntTSL 5 BASIC2.37□□□□□ -2.03
HOXD3P31249 AC000403.1-201ENST00000613696 3585 ntBASIC2.37□□□□□ -2.03
HOXD3P31249 FPGT-TNNI3K-202ENST00000370895 7566 ntTSL 2 BASIC2.37□□□□□ -2.03
HOXD3P31249 AF165147.1-201ENST00000433310 6103 ntTSL 2 BASIC2.37□□□□□ -2.03
HOXD3P31249 Y_RNA.16-201ENST00000362421 102 ntBASIC2.37□□□□□ -2.03
HOXD3P31249 RNU6-379P-201ENST00000363813 104 ntBASIC2.37□□□□□ -2.03
HOXD3P31249 RNU6-280P-201ENST00000364145 104 ntBASIC2.37□□□□□ -2.03
HOXD3P31249 Y_RNA.288-201ENST00000364854 92 ntBASIC2.37□□□□□ -2.03
HOXD3P31249 Y_RNA.477-201ENST00000384352 108 ntBASIC2.37□□□□□ -2.03
HOXD3P31249 MIR627-201ENST00000384979 97 ntBASIC2.37□□□□□ -2.03
HOXD3P31249 MIR218-1-201ENST00000384999 110 ntBASIC2.37□□□□□ -2.03
HOXD3P31249 SNORD67-201ENST00000390833 111 ntBASIC2.37□□□□□ -2.03
HOXD3P31249 SNORA46.1-201ENST00000391069 153 ntBASIC2.37□□□□□ -2.03
HOXD3P31249 RNU2-25P-201ENST00000411041 191 ntBASIC2.37□□□□□ -2.03
HOXD3P31249 AC004866.1-201ENST00000411748 78 ntBASIC2.37□□□□□ -2.03
HOXD3P31249 AC027124.2-201ENST00000428249 105 ntBASIC2.37□□□□□ -2.03
HOXD3P31249 AC107083.1-201ENST00000439643 279 ntBASIC2.37□□□□□ -2.03
HOXD3P31249 RNU6-1132P-201ENST00000459214 107 ntBASIC2.37□□□□□ -2.03
HOXD3P31249 AC117462.1-201ENST00000461186 554 ntTSL 4 BASIC2.37□□□□□ -2.03
HOXD3P31249 TRBVB-201ENST00000477100 408 ntBASIC2.37□□□□□ -2.03
HOXD3P31249 SEM1P1-201ENST00000506694 209 ntBASIC2.37□□□□□ -2.03
HOXD3P31249 AC104027.1-201ENST00000521887 300 ntBASIC2.37□□□□□ -2.03
HOXD3P31249 DEFB131C-201ENST00000528817 165 ntBASIC2.37□□□□□ -2.03
HOXD3P31249 AC103810.1-201ENST00000579873 453 ntBASIC2.37□□□□□ -2.03
HOXD3P31249 Clostridiales-1.2-201ENST00000636724 160 ntBASIC2.37□□□□□ -2.03
HOXD3P31249 SPAM1-206ENST00000460182 2154 ntAPPRIS ALT2 TSL 1 (best) BASIC2.37□□□□□ -2.03
HOXD3P31249 AC135776.4-201ENST00000624300 1904 ntBASIC2.36□□□□□ -2.03
HOXD3P31249 MTND5P6-201ENST00000422338 1798 ntBASIC2.36□□□□□ -2.03
HOXD3P31249 SLC4A7-201ENST00000295736 7757 ntAPPRIS P3 TSL 1 (best) BASIC2.36□□□□□ -2.03
HOXD3P31249 RNA5SP383-201ENST00000362934 120 ntBASIC2.36□□□□□ -2.03
HOXD3P31249 RNU6-626P-201ENST00000363354 107 ntBASIC2.36□□□□□ -2.03
HOXD3P31249 SNORD113-8-201ENST00000363497 74 ntBASIC2.36□□□□□ -2.03
HOXD3P31249 Y_RNA.286-201ENST00000364813 102 ntBASIC2.36□□□□□ -2.03
HOXD3P31249 Y_RNA.447-201ENST00000384184 113 ntBASIC2.36□□□□□ -2.03
HOXD3P31249 MRPL35P1-201ENST00000404272 572 ntBASIC2.36□□□□□ -2.03
HOXD3P31249 RNU4-30P-201ENST00000410245 143 ntBASIC2.36□□□□□ -2.03
HOXD3P31249 RNU6-1203P-201ENST00000410703 110 ntBASIC2.36□□□□□ -2.03
HOXD3P31249 Y_RNA.618-201ENST00000410949 107 ntBASIC2.36□□□□□ -2.03
HOXD3P31249 EEF1A1P41-201ENST00000414667 207 ntBASIC2.36□□□□□ -2.03
HOXD3P31249 LINC02331-201ENST00000418927 602 ntTSL 5 BASIC2.36□□□□□ -2.03
HOXD3P31249 AC121342.1-201ENST00000423914 550 ntTSL 3 BASIC2.36□□□□□ -2.03
HOXD3P31249 AC091179.3-201ENST00000474761 144 ntBASIC2.36□□□□□ -2.03
HOXD3P31249 SNORA40.9-201ENST00000515895 93 ntBASIC2.36□□□□□ -2.03
HOXD3P31249 RNA5SP385-201ENST00000515947 110 ntBASIC2.36□□□□□ -2.03
HOXD3P31249 RNU1-143P-201ENST00000516296 146 ntBASIC2.36□□□□□ -2.03
HOXD3P31249 Y_RNA.713-201ENST00000517013 96 ntBASIC2.36□□□□□ -2.03
HOXD3P31249 EIF4A1P12-201ENST00000551910 141 ntBASIC2.36□□□□□ -2.03
HOXD3P31249 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC2.36□□□□□ -2.03
HOXD3P31249 AC055872.1-201ENST00000570978 278 ntBASIC2.36□□□□□ -2.03
HOXD3P31249 MIR3128-201ENST00000581957 66 ntBASIC2.36□□□□□ -2.03
HOXD3P31249 MIR3124-201ENST00000582636 67 ntBASIC2.36□□□□□ -2.03
HOXD3P31249 U1.23-201ENST00000610293 146 ntBASIC2.36□□□□□ -2.03
Retrieved 100 of 98,524 protein–RNA pairs in 102.2 ms