Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 MIR5695-201ENST00000579717 85 ntBASIC0.52□□□□□ -2.33
HLA-DMBP28068 MIR4714-201ENST00000580728 77 ntBASIC0.52□□□□□ -2.33
HLA-DMBP28068 AC022960.1-201ENST00000582269 348 ntTSL 3 BASIC0.52□□□□□ -2.33
HLA-DMBP28068 AL929325.1-201ENST00000603096 117 ntBASIC0.52□□□□□ -2.33
HLA-DMBP28068 AL513534.2-201ENST00000603836 250 ntBASIC0.52□□□□□ -2.33
HLA-DMBP28068 AC091805.2-201ENST00000603848 235 ntBASIC0.52□□□□□ -2.33
HLA-DMBP28068 AL590095.2-201ENST00000604136 117 ntBASIC0.52□□□□□ -2.33
HLA-DMBP28068 AP001836.1-201ENST00000604675 523 ntBASIC0.52□□□□□ -2.33
HLA-DMBP28068 AC091304.9-201ENST00000612091 226 ntBASIC0.52□□□□□ -2.33
HLA-DMBP28068 AC006927.3-201ENST00000638789 384 ntBASIC0.52□□□□□ -2.33
HLA-DMBP28068 MT-ATP6-201ENST00000361899 681 ntAPPRIS P1 BASIC0.51□□□□□ -2.33
HLA-DMBP28068 Y_RNA.124-201ENST00000363339 93 ntBASIC0.51□□□□□ -2.33
HLA-DMBP28068 SNORA20.2-201ENST00000383922 131 ntBASIC0.51□□□□□ -2.33
HLA-DMBP28068 RNU6-1031P-201ENST00000384773 107 ntBASIC0.51□□□□□ -2.33
HLA-DMBP28068 MIR598-201ENST00000384868 97 ntBASIC0.51□□□□□ -2.33
HLA-DMBP28068 MIR200A-201ENST00000384875 90 ntBASIC0.51□□□□□ -2.33
HLA-DMBP28068 AC011233.1-201ENST00000422812 283 ntBASIC0.51□□□□□ -2.33
HLA-DMBP28068 AC073614.1-201ENST00000438690 650 ntBASIC0.51□□□□□ -2.33
HLA-DMBP28068 UPP2-IT1-201ENST00000439185 357 ntTSL 3 BASIC0.51□□□□□ -2.33
HLA-DMBP28068 AL133217.1-201ENST00000450980 425 ntBASIC0.51□□□□□ -2.33
HLA-DMBP28068 AC048334.1-201ENST00000477975 159 ntBASIC0.51□□□□□ -2.33
HLA-DMBP28068 RAP1BP2-201ENST00000478270 544 ntBASIC0.51□□□□□ -2.33
HLA-DMBP28068 MGC32805-203ENST00000506053 652 ntTSL 3 BASIC0.51□□□□□ -2.33
HLA-DMBP28068 SNORD79.1-201ENST00000516069 84 ntBASIC0.51□□□□□ -2.33
HLA-DMBP28068 RNU6-948P-201ENST00000516374 107 ntBASIC0.51□□□□□ -2.33
HLA-DMBP28068 RNU6-1178P-201ENST00000516674 107 ntBASIC0.51□□□□□ -2.33
HLA-DMBP28068 AC090572.1-201ENST00000519251 160 ntBASIC0.51□□□□□ -2.33
HLA-DMBP28068 AC022878.1-201ENST00000530684 149 ntBASIC0.51□□□□□ -2.33
HLA-DMBP28068 AL121579.1-201ENST00000555129 305 ntBASIC0.51□□□□□ -2.33
HLA-DMBP28068 AC004817.2-201ENST00000561794 651 ntBASIC0.51□□□□□ -2.33
HLA-DMBP28068 AC022432.1-201ENST00000595739 310 ntBASIC0.51□□□□□ -2.33
HLA-DMBP28068 AL390123.1-201ENST00000603216 237 ntBASIC0.51□□□□□ -2.33
HLA-DMBP28068 AC022418.1-201ENST00000624118 445 ntBASIC0.51□□□□□ -2.33
HLA-DMBP28068 MPP6-209ENST00000625307 126 ntTSL 5 BASIC0.51□□□□□ -2.33
HLA-DMBP28068 RNU6-975P-201ENST00000384296 105 ntBASIC0.5□□□□□ -2.33
HLA-DMBP28068 Y_RNA.480-201ENST00000384364 102 ntBASIC0.5□□□□□ -2.33
HLA-DMBP28068 RNA5SP109-201ENST00000391010 116 ntBASIC0.5□□□□□ -2.33
HLA-DMBP28068 AL162411.1-201ENST00000413145 526 ntTSL 2 BASIC0.5□□□□□ -2.33
HLA-DMBP28068 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC0.5□□□□□ -2.33
HLA-DMBP28068 AL512286.1-201ENST00000439244 400 ntBASIC0.5□□□□□ -2.33
HLA-DMBP28068 AC245047.7-201ENST00000440265 293 ntBASIC0.5□□□□□ -2.33
HLA-DMBP28068 AC092991.1-201ENST00000477176 376 ntBASIC0.5□□□□□ -2.33
HLA-DMBP28068 AC010486.2-201ENST00000505572 483 ntBASIC0.5□□□□□ -2.33
HLA-DMBP28068 RNU6-322P-201ENST00000516010 103 ntBASIC0.5□□□□□ -2.33
HLA-DMBP28068 RNU6-1146P-201ENST00000516282 102 ntBASIC0.5□□□□□ -2.33
HLA-DMBP28068 SNORA25.17-201ENST00000517184 124 ntBASIC0.5□□□□□ -2.33
HLA-DMBP28068 AC103996.1-201ENST00000555468 102 ntBASIC0.5□□□□□ -2.33
HLA-DMBP28068 MIR4753-201ENST00000585119 83 ntBASIC0.5□□□□□ -2.33
HLA-DMBP28068 AC005771.1-201ENST00000585581 349 ntBASIC0.5□□□□□ -2.33
HLA-DMBP28068 AC008751.2-201ENST00000597885 980 ntBASIC0.5□□□□□ -2.33
HLA-DMBP28068 AC112191.3-201ENST00000604371 277 ntBASIC0.5□□□□□ -2.33
HLA-DMBP28068 AC104458.1-201ENST00000608243 463 ntBASIC0.5□□□□□ -2.33
HLA-DMBP28068 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC0.5□□□□□ -2.33
HLA-DMBP28068 AL359697.1-201ENST00000624879 587 ntBASIC0.5□□□□□ -2.33
HLA-DMBP28068 TTK-211ENST00000627129 240 ntTSL 5 BASIC0.5□□□□□ -2.33
HLA-DMBP28068 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC0.49□□□□□ -2.33
HLA-DMBP28068 RNU6-500P-201ENST00000362349 107 ntBASIC0.49□□□□□ -2.33
HLA-DMBP28068 RNU6-1287P-201ENST00000362914 107 ntBASIC0.49□□□□□ -2.33
HLA-DMBP28068 SNORD113-6-201ENST00000363345 75 ntBASIC0.49□□□□□ -2.33
HLA-DMBP28068 Y_RNA.287-201ENST00000364853 94 ntBASIC0.49□□□□□ -2.33
HLA-DMBP28068 RNU1-133P-201ENST00000364867 167 ntBASIC0.49□□□□□ -2.33
HLA-DMBP28068 Y_RNA.367-201ENST00000365544 101 ntBASIC0.49□□□□□ -2.33
HLA-DMBP28068 RNU6-1060P-201ENST00000384664 107 ntBASIC0.49□□□□□ -2.33
HLA-DMBP28068 MIR613-201ENST00000385248 95 ntBASIC0.49□□□□□ -2.33
HLA-DMBP28068 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC0.49□□□□□ -2.33
HLA-DMBP28068 AL136980.1-201ENST00000426764 543 ntTSL 3 BASIC0.49□□□□□ -2.33
HLA-DMBP28068 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC0.49□□□□□ -2.33
HLA-DMBP28068 RNU6-1132P-201ENST00000459214 107 ntBASIC0.49□□□□□ -2.33
HLA-DMBP28068 SRRM1P2-201ENST00000464531 1192 ntBASIC0.49□□□□□ -2.33
HLA-DMBP28068 AC079382.1-201ENST00000493346 557 ntBASIC0.49□□□□□ -2.33
HLA-DMBP28068 AL139147.1-201ENST00000502413 1156 ntTSL 2 BASIC0.49□□□□□ -2.33
HLA-DMBP28068 AK3P2-201ENST00000507976 429 ntBASIC0.49□□□□□ -2.33
HLA-DMBP28068 RNA5SP436-201ENST00000516020 115 ntBASIC0.49□□□□□ -2.33
HLA-DMBP28068 SNORA31.10-201ENST00000516482 106 ntBASIC0.49□□□□□ -2.33
HLA-DMBP28068 AC090142.3-201ENST00000519012 385 ntBASIC0.49□□□□□ -2.33
HLA-DMBP28068 AP003072.2-201ENST00000527756 676 ntBASIC0.49□□□□□ -2.33
HLA-DMBP28068 AP003484.1-201ENST00000530974 250 ntBASIC0.49□□□□□ -2.33
HLA-DMBP28068 AC018767.1-201ENST00000566236 405 ntTSL 3 BASIC0.49□□□□□ -2.33
HLA-DMBP28068 TEX41-243ENST00000614173 190 ntTSL 5 BASIC0.49□□□□□ -2.33
HLA-DMBP28068 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC0.49□□□□□ -2.33
HLA-DMBP28068 AL078595.3-201ENST00000623815 1166 ntBASIC0.49□□□□□ -2.33
HLA-DMBP28068 U6.114-201ENST00000636407 96 ntBASIC0.49□□□□□ -2.33
HLA-DMBP28068 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC0.49□□□□□ -2.33
HLA-DMBP28068 HECTD2-202ENST00000371667 4354 ntTSL 1 (best) BASIC0.49□□□□□ -2.33
HLA-DMBP28068 ZNF518A-209ENST00000614149 7911 ntAPPRIS P1 TSL 5 BASIC0.48□□□□□ -2.33
HLA-DMBP28068 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC0.48□□□□□ -2.33
HLA-DMBP28068 Y_RNA.363-201ENST00000365529 113 ntBASIC0.48□□□□□ -2.33
HLA-DMBP28068 RNU6-827P-201ENST00000365553 106 ntBASIC0.48□□□□□ -2.33
HLA-DMBP28068 RNU6-505P-201ENST00000384427 107 ntBASIC0.48□□□□□ -2.33
HLA-DMBP28068 RNU6-1093P-201ENST00000391194 107 ntBASIC0.48□□□□□ -2.33
HLA-DMBP28068 AF228730.1-201ENST00000397972 663 ntBASIC0.48□□□□□ -2.33
HLA-DMBP28068 AL355143.1-201ENST00000407101 841 ntBASIC0.48□□□□□ -2.33
HLA-DMBP28068 AC090960.1-201ENST00000421072 306 ntBASIC0.48□□□□□ -2.33
HLA-DMBP28068 AC012368.2-201ENST00000423539 560 ntTSL 3 BASIC0.48□□□□□ -2.33
HLA-DMBP28068 MTCO2P23-201ENST00000425216 680 ntBASIC0.48□□□□□ -2.33
HLA-DMBP28068 AL445305.1-201ENST00000432577 575 ntBASIC0.48□□□□□ -2.33
HLA-DMBP28068 AC104850.1-201ENST00000435940 476 ntBASIC0.48□□□□□ -2.33
HLA-DMBP28068 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC0.48□□□□□ -2.33
HLA-DMBP28068 AL606517.2-201ENST00000442855 241 ntBASIC0.48□□□□□ -2.33
HLA-DMBP28068 AC079140.5-201ENST00000507882 310 ntBASIC0.48□□□□□ -2.33
Retrieved 100 of 98,524 protein–RNA pairs in 95 ms