Protein–RNA interactions for Protein: O95639

CPSF4, Cleavage and polyadenylation specificity factor subunit 4, humanhuman

Known RBP Predictions only

Length 269 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4O95639 DEFB131C-201ENST00000528817 165 ntBASIC0.97□□□□□ -2.25
CPSF4O95639 AC104383.1-201ENST00000530297 370 ntBASIC0.97□□□□□ -2.25
CPSF4O95639 AP003034.1-201ENST00000534621 422 ntBASIC0.97□□□□□ -2.25
CPSF4O95639 AC007495.2-202ENST00000564102 535 ntTSL 4 BASIC0.97□□□□□ -2.25
CPSF4O95639 SNORA59B-202ENST00000578183 701 ntBASIC0.97□□□□□ -2.25
CPSF4O95639 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC0.97□□□□□ -2.25
CPSF4O95639 MTND1P15-201ENST00000579262 949 ntBASIC0.97□□□□□ -2.25
CPSF4O95639 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC0.97□□□□□ -2.25
CPSF4O95639 RPL17P51-201ENST00000605218 238 ntBASIC0.97□□□□□ -2.25
CPSF4O95639 AL121757.2-201ENST00000611223 313 ntBASIC0.97□□□□□ -2.25
CPSF4O95639 AC083806.3-201ENST00000614016 455 ntBASIC0.97□□□□□ -2.25
CPSF4O95639 MIR8074-201ENST00000615081 81 ntBASIC0.97□□□□□ -2.25
CPSF4O95639 MESTIT1_1.1-201ENST00000618871 140 ntBASIC0.97□□□□□ -2.25
CPSF4O95639 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC0.97□□□□□ -2.25
CPSF4O95639 AL159152.1-201ENST00000635019 2587 ntBASIC0.97□□□□□ -2.25
CPSF4O95639 LINC00643-201ENST00000334389 3247 ntTSL 2 BASIC0.96□□□□□ -2.26
CPSF4O95639 JMJD1C-212ENST00000639129 7901 ntAPPRIS ALT2 TSL 5 BASIC0.96□□□□□ -2.26
CPSF4O95639 AL391987.6-201ENST00000305671 199 ntBASIC0.96□□□□□ -2.26
CPSF4O95639 RNU6-545P-201ENST00000362681 104 ntBASIC0.96□□□□□ -2.26
CPSF4O95639 RNU6-1317P-201ENST00000364582 104 ntBASIC0.96□□□□□ -2.26
CPSF4O95639 RNU4-66P-201ENST00000365199 138 ntBASIC0.96□□□□□ -2.26
CPSF4O95639 RNU6-1329P-201ENST00000365664 107 ntBASIC0.96□□□□□ -2.26
CPSF4O95639 SNORA69-201ENST00000383895 132 ntBASIC0.96□□□□□ -2.26
CPSF4O95639 SNORA29-201ENST00000384183 140 ntBASIC0.96□□□□□ -2.26
CPSF4O95639 RNU6-1119P-201ENST00000384349 108 ntBASIC0.96□□□□□ -2.26
CPSF4O95639 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC0.96□□□□□ -2.26
CPSF4O95639 AC073323.1-201ENST00000419832 451 ntTSL 2 BASIC0.96□□□□□ -2.26
CPSF4O95639 USP9YP28-201ENST00000435142 589 ntBASIC0.96□□□□□ -2.26
CPSF4O95639 AC007395.1-201ENST00000451333 677 ntBASIC0.96□□□□□ -2.26
CPSF4O95639 AC087477.1-201ENST00000465747 340 ntBASIC0.96□□□□□ -2.26
CPSF4O95639 AC083798.1-201ENST00000472671 131 ntBASIC0.96□□□□□ -2.26
CPSF4O95639 AC091435.1-201ENST00000505442 584 ntBASIC0.96□□□□□ -2.26
CPSF4O95639 AC008852.1-201ENST00000510198 451 ntTSL 2 BASIC0.96□□□□□ -2.26
CPSF4O95639 Y_RNA.688-201ENST00000516565 95 ntBASIC0.96□□□□□ -2.26
CPSF4O95639 AC099520.1-206ENST00000523434 486 ntTSL 3 BASIC0.96□□□□□ -2.26
CPSF4O95639 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC0.96□□□□□ -2.26
CPSF4O95639 MIR3611-201ENST00000584484 83 ntBASIC0.96□□□□□ -2.26
CPSF4O95639 MIR5692C1-201ENST00000585309 91 ntBASIC0.96□□□□□ -2.26
CPSF4O95639 AC010620.1-201ENST00000601088 1102 ntBASIC0.96□□□□□ -2.26
CPSF4O95639 CTHRC1P1-201ENST00000605383 469 ntBASIC0.96□□□□□ -2.26
CPSF4O95639 AL357078.3-201ENST00000607528 618 ntBASIC0.96□□□□□ -2.26
CPSF4O95639 AC068792.1-201ENST00000621354 417 ntBASIC0.96□□□□□ -2.26
CPSF4O95639 SEMG1-201ENST00000372781 1662 ntAPPRIS P1 TSL 1 (best) BASIC0.96□□□□□ -2.26
CPSF4O95639 BRDT-206ENST00000402388 3125 ntAPPRIS P3 TSL 1 (best) BASIC0.95□□□□□ -2.26
CPSF4O95639 MIR26B-201ENST00000362251 77 ntBASIC0.95□□□□□ -2.26
CPSF4O95639 RNU6-862P-201ENST00000362804 105 ntBASIC0.95□□□□□ -2.26
CPSF4O95639 RNU6-877P-201ENST00000383868 107 ntBASIC0.95□□□□□ -2.26
CPSF4O95639 SNORD116-9-201ENST00000384000 95 ntBASIC0.95□□□□□ -2.26
CPSF4O95639 SNORD116-3-201ENST00000384287 95 ntBASIC0.95□□□□□ -2.26
CPSF4O95639 SNORD116-7-201ENST00000384404 95 ntBASIC0.95□□□□□ -2.26
CPSF4O95639 SNORD116-5-201ENST00000384462 95 ntBASIC0.95□□□□□ -2.26
CPSF4O95639 RNY3P9-201ENST00000384727 106 ntBASIC0.95□□□□□ -2.26
CPSF4O95639 RPL30P13-201ENST00000418873 348 ntBASIC0.95□□□□□ -2.26
CPSF4O95639 SNRPEP10-201ENST00000420249 274 ntBASIC0.95□□□□□ -2.26
CPSF4O95639 AP000235.1-201ENST00000424017 479 ntTSL 3 BASIC0.95□□□□□ -2.26
CPSF4O95639 TIMM9P3-201ENST00000428659 274 ntBASIC0.95□□□□□ -2.26
CPSF4O95639 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC0.95□□□□□ -2.26
CPSF4O95639 ATP5J2P3-201ENST00000451550 258 ntBASIC0.95□□□□□ -2.26
CPSF4O95639 RNU6-261P-201ENST00000459506 102 ntBASIC0.95□□□□□ -2.26
CPSF4O95639 SRRM1P2-201ENST00000464531 1192 ntBASIC0.95□□□□□ -2.26
CPSF4O95639 AC025465.3-201ENST00000510570 311 ntBASIC0.95□□□□□ -2.26
CPSF4O95639 AP005436.2-201ENST00000528458 252 ntTSL 5 BASIC0.95□□□□□ -2.26
CPSF4O95639 AC016256.1-201ENST00000547971 354 ntBASIC0.95□□□□□ -2.26
CPSF4O95639 AL157911.1-202ENST00000554123 502 ntTSL 3 BASIC0.95□□□□□ -2.26
CPSF4O95639 SUB1P3-201ENST00000564581 315 ntBASIC0.95□□□□□ -2.26
CPSF4O95639 AC138625.1-201ENST00000567556 483 ntTSL 3 BASIC0.95□□□□□ -2.26
CPSF4O95639 PRR13P7-201ENST00000605538 430 ntBASIC0.95□□□□□ -2.26
CPSF4O95639 U91328.3-201ENST00000608931 354 ntTSL 3 BASIC0.95□□□□□ -2.26
CPSF4O95639 Hammerhead_HH9.1-201ENST00000616606 77 ntBASIC0.95□□□□□ -2.26
CPSF4O95639 PLD1-217ENST00000627725 174 ntTSL 5 BASIC0.95□□□□□ -2.26
CPSF4O95639 MTND5P26-201ENST00000426018 1752 ntBASIC0.94□□□□□ -2.26
CPSF4O95639 RNU6-562P-201ENST00000362731 107 ntBASIC0.94□□□□□ -2.26
CPSF4O95639 Y_RNA.67-201ENST00000362870 100 ntBASIC0.94□□□□□ -2.26
CPSF4O95639 RNU5B-2P-201ENST00000363036 113 ntBASIC0.94□□□□□ -2.26
CPSF4O95639 Y_RNA.132-201ENST00000363421 102 ntBASIC0.94□□□□□ -2.26
CPSF4O95639 Y_RNA.167-201ENST00000363735 109 ntBASIC0.94□□□□□ -2.26
CPSF4O95639 RNU6-1322P-201ENST00000364309 107 ntBASIC0.94□□□□□ -2.26
CPSF4O95639 RNU6-418P-201ENST00000384035 107 ntBASIC0.94□□□□□ -2.26
CPSF4O95639 MIR549A-201ENST00000385268 96 ntBASIC0.94□□□□□ -2.26
CPSF4O95639 AC245047.4-201ENST00000433189 144 ntBASIC0.94□□□□□ -2.26
CPSF4O95639 UBE2V1P8-201ENST00000437166 265 ntBASIC0.94□□□□□ -2.26
CPSF4O95639 HSPE1P9-201ENST00000440046 311 ntBASIC0.94□□□□□ -2.26
CPSF4O95639 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC0.94□□□□□ -2.26
CPSF4O95639 MTND3P16-201ENST00000452205 344 ntBASIC0.94□□□□□ -2.26
CPSF4O95639 U8.21-201ENST00000459536 136 ntBASIC0.94□□□□□ -2.26
CPSF4O95639 Y_RNA.654-201ENST00000497848 106 ntBASIC0.94□□□□□ -2.26
CPSF4O95639 AC092436.3-201ENST00000511788 257 ntBASIC0.94□□□□□ -2.26
CPSF4O95639 SNORA19.2-201ENST00000516013 114 ntBASIC0.94□□□□□ -2.26
CPSF4O95639 RNU6-1041P-201ENST00000516254 102 ntBASIC0.94□□□□□ -2.26
CPSF4O95639 SNORD60.2-201ENST00000516883 86 ntBASIC0.94□□□□□ -2.26
CPSF4O95639 RNU6-835P-201ENST00000516974 104 ntBASIC0.94□□□□□ -2.26
CPSF4O95639 IGHVII-53-1-201ENST00000519538 255 ntBASIC0.94□□□□□ -2.26
CPSF4O95639 MRPS36P4-201ENST00000534436 298 ntBASIC0.94□□□□□ -2.26
CPSF4O95639 SCOCP1-201ENST00000554676 349 ntBASIC0.94□□□□□ -2.26
CPSF4O95639 AL157687.1-201ENST00000554853 619 ntBASIC0.94□□□□□ -2.26
CPSF4O95639 HMGB1P33-201ENST00000563485 527 ntBASIC0.94□□□□□ -2.26
CPSF4O95639 SNORA77B-201ENST00000578179 125 ntBASIC0.94□□□□□ -2.26
CPSF4O95639 AP005136.1-201ENST00000579765 429 ntBASIC0.94□□□□□ -2.26
CPSF4O95639 AC016727.2-201ENST00000603988 621 ntBASIC0.94□□□□□ -2.26
CPSF4O95639 AC092807.2-201ENST00000609367 243 ntBASIC0.94□□□□□ -2.26
Retrieved 100 of 98,524 protein–RNA pairs in 186.3 ms