Protein–RNA interactions for Protein: O95343

SIX3, Homeobox protein SIX3, humanhuman

Predicted RBP Predictions only

Length 332 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SIX3O95343 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC1.94□□□□□ -2.1
SIX3O95343 MRPS36P4-201ENST00000534436 298 ntBASIC1.94□□□□□ -2.1
SIX3O95343 GNAI2P1-201ENST00000541815 315 ntBASIC1.94□□□□□ -2.1
SIX3O95343 EIF1P4-201ENST00000572664 335 ntBASIC1.94□□□□□ -2.1
SIX3O95343 FGF7P1-201ENST00000582820 288 ntBASIC1.94□□□□□ -2.1
SIX3O95343 AC005520.5-201ENST00000613926 164 ntBASIC1.94□□□□□ -2.1
SIX3O95343 AC024614.3-201ENST00000637860 256 ntBASIC1.94□□□□□ -2.1
SIX3O95343 SI-201ENST00000264382 6011 ntAPPRIS P1 TSL 1 (best) BASIC1.94□□□□□ -2.1
SIX3O95343 FSIP2-206ENST00000611759 3882 ntAPPRIS ALT2 TSL 5 BASIC1.93□□□□□ -2.1
SIX3O95343 RNU6-562P-201ENST00000362731 107 ntBASIC1.93□□□□□ -2.1
SIX3O95343 RNY4P14-201ENST00000363656 96 ntBASIC1.93□□□□□ -2.1
SIX3O95343 SNORD31B-201ENST00000364977 69 ntBASIC1.93□□□□□ -2.1
SIX3O95343 Y_RNA.332-201ENST00000365271 113 ntBASIC1.93□□□□□ -2.1
SIX3O95343 Y_RNA.450-201ENST00000384198 113 ntBASIC1.93□□□□□ -2.1
SIX3O95343 RNU2-2P-201ENST00000410396 191 ntBASIC1.93□□□□□ -2.1
SIX3O95343 ZNF885P-201ENST00000420174 1098 ntBASIC1.93□□□□□ -2.1
SIX3O95343 LINC02541-201ENST00000427157 327 ntTSL 3 BASIC1.93□□□□□ -2.1
SIX3O95343 AL645568.3-201ENST00000433683 316 ntBASIC1.93□□□□□ -2.1
SIX3O95343 RNU7-187P-201ENST00000458985 68 ntBASIC1.93□□□□□ -2.1
SIX3O95343 TOMM22P6-201ENST00000465035 409 ntBASIC1.93□□□□□ -2.1
SIX3O95343 AL163540.1-201ENST00000485382 386 ntBASIC1.93□□□□□ -2.1
SIX3O95343 AC110009.1-201ENST00000512965 451 ntTSL 5 BASIC1.93□□□□□ -2.1
SIX3O95343 ACA59.1-201ENST00000515966 143 ntBASIC1.93□□□□□ -2.1
SIX3O95343 RNU6-256P-201ENST00000516747 97 ntBASIC1.93□□□□□ -2.1
SIX3O95343 SUMO2P18-201ENST00000518873 252 ntBASIC1.93□□□□□ -2.1
SIX3O95343 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC1.93□□□□□ -2.1
SIX3O95343 AC009269.4-201ENST00000557828 440 ntTSL 3 BASIC1.93□□□□□ -2.1
SIX3O95343 MIR5006-201ENST00000583027 110 ntBASIC1.93□□□□□ -2.1
SIX3O95343 AP000907.4-201ENST00000604143 237 ntBASIC1.93□□□□□ -2.1
SIX3O95343 U2.15-201ENST00000611544 191 ntBASIC1.93□□□□□ -2.1
SIX3O95343 U2.16-201ENST00000613119 191 ntBASIC1.93□□□□□ -2.1
SIX3O95343 U2.12-201ENST00000613778 191 ntBASIC1.93□□□□□ -2.1
SIX3O95343 U2.20-201ENST00000613956 192 ntBASIC1.93□□□□□ -2.1
SIX3O95343 U2.9-201ENST00000615427 191 ntBASIC1.93□□□□□ -2.1
SIX3O95343 U2.11-201ENST00000616345 191 ntBASIC1.93□□□□□ -2.1
SIX3O95343 U2.2-201ENST00000616535 191 ntBASIC1.93□□□□□ -2.1
SIX3O95343 U4.5-201ENST00000617137 123 ntBASIC1.93□□□□□ -2.1
SIX3O95343 U2.3-201ENST00000617785 191 ntBASIC1.93□□□□□ -2.1
SIX3O95343 U2.19-201ENST00000618602 191 ntBASIC1.93□□□□□ -2.1
SIX3O95343 RNU2-1-201ENST00000618664 191 ntBASIC1.93□□□□□ -2.1
SIX3O95343 U2.6-201ENST00000619225 191 ntBASIC1.93□□□□□ -2.1
SIX3O95343 U2.5-201ENST00000619465 191 ntBASIC1.93□□□□□ -2.1
SIX3O95343 AC137590.2-201ENST00000619709 240 ntBASIC1.93□□□□□ -2.1
SIX3O95343 U2.10-201ENST00000620268 191 ntBASIC1.93□□□□□ -2.1
SIX3O95343 AC009033.1-201ENST00000624279 431 ntBASIC1.93□□□□□ -2.1
SIX3O95343 AC095038.3-201ENST00000634439 195 ntBASIC1.93□□□□□ -2.1
SIX3O95343 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.93□□□□□ -2.1
SIX3O95343 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
SIX3O95343 GAGE12B-201ENST00000361446 117 ntAPPRIS P1 BASIC1.92□□□□□ -2.1
SIX3O95343 Y_RNA.151-201ENST00000363566 112 ntBASIC1.92□□□□□ -2.1
SIX3O95343 Y_RNA.414-201ENST00000384011 101 ntBASIC1.92□□□□□ -2.1
SIX3O95343 Y_RNA.516-201ENST00000384541 124 ntBASIC1.92□□□□□ -2.1
SIX3O95343 MTND1P34-201ENST00000438556 671 ntBASIC1.92□□□□□ -2.1
SIX3O95343 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC1.92□□□□□ -2.1
SIX3O95343 AC003988.1-201ENST00000447198 578 ntTSL 5 BASIC1.92□□□□□ -2.1
SIX3O95343 RNU2-44P-201ENST00000516795 194 ntBASIC1.92□□□□□ -2.1
SIX3O95343 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC1.92□□□□□ -2.1
SIX3O95343 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC1.92□□□□□ -2.1
SIX3O95343 MIR4448-201ENST00000584360 86 ntBASIC1.92□□□□□ -2.1
SIX3O95343 MIR4753-201ENST00000585119 83 ntBASIC1.92□□□□□ -2.1
SIX3O95343 AC008749.1-201ENST00000597650 306 ntBASIC1.92□□□□□ -2.1
SIX3O95343 AP003465.2-201ENST00000602571 373 ntBASIC1.92□□□□□ -2.1
SIX3O95343 AC009318.2-201ENST00000610917 651 ntBASIC1.92□□□□□ -2.1
SIX3O95343 AC005562.2-201ENST00000618264 111 ntBASIC1.92□□□□□ -2.1
SIX3O95343 AL359697.1-201ENST00000624879 587 ntBASIC1.92□□□□□ -2.1
SIX3O95343 ZBBX-205ENST00000455345 3185 ntAPPRIS ALT2 TSL 1 (best) BASIC1.92□□□□□ -2.1
SIX3O95343 LINC01790-201ENST00000447194 2852 ntTSL 2 BASIC1.92□□□□□ -2.1
SIX3O95343 CBX3P1-201ENST00000325243 554 ntBASIC1.91□□□□□ -2.1
SIX3O95343 SNORA8-201ENST00000384574 139 ntBASIC1.91□□□□□ -2.1
SIX3O95343 SNORD116-4-201ENST00000384733 96 ntBASIC1.91□□□□□ -2.1
SIX3O95343 SNORD115-47-201ENST00000391226 86 ntBASIC1.91□□□□□ -2.1
SIX3O95343 RNA5SP489-201ENST00000410986 109 ntBASIC1.91□□□□□ -2.1
SIX3O95343 NCOR1P3-201ENST00000420479 303 ntBASIC1.91□□□□□ -2.1
SIX3O95343 AL445646.1-201ENST00000431784 216 ntBASIC1.91□□□□□ -2.1
SIX3O95343 MTCO3P18-201ENST00000440206 761 ntBASIC1.91□□□□□ -2.1
SIX3O95343 AC092989.1-201ENST00000481235 277 ntBASIC1.91□□□□□ -2.1
SIX3O95343 AC078980.1-201ENST00000485384 262 ntTSL 2 BASIC1.91□□□□□ -2.1
SIX3O95343 Y_RNA.655-201ENST00000515919 96 ntBASIC1.91□□□□□ -2.1
SIX3O95343 HMSD-204ENST00000526932 162 ntTSL 3 BASIC1.91□□□□□ -2.1
SIX3O95343 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC1.91□□□□□ -2.1
SIX3O95343 AC026470.2-201ENST00000561492 181 ntBASIC1.91□□□□□ -2.1
SIX3O95343 AC012435.2-201ENST00000562869 361 ntTSL 3 BASIC1.91□□□□□ -2.1
SIX3O95343 TPRKBP2-201ENST00000565969 475 ntBASIC1.91□□□□□ -2.1
SIX3O95343 AC019193.3-201ENST00000609144 554 ntBASIC1.91□□□□□ -2.1
SIX3O95343 AL133215.3-201ENST00000609801 448 ntBASIC1.91□□□□□ -2.1
SIX3O95343 RMST_6.1-201ENST00000611980 203 ntBASIC1.91□□□□□ -2.1
SIX3O95343 AC083806.3-201ENST00000614016 455 ntBASIC1.91□□□□□ -2.1
SIX3O95343 TEX41-243ENST00000614173 190 ntTSL 5 BASIC1.91□□□□□ -2.1
SIX3O95343 MIR219B-201ENST00000637023 88 ntBASIC1.91□□□□□ -2.1
SIX3O95343 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC1.9□□□□□ -2.1
SIX3O95343 Y_RNA.89-201ENST00000363031 102 ntBASIC1.9□□□□□ -2.11
SIX3O95343 SNORD114-6-201ENST00000364393 72 ntBASIC1.9□□□□□ -2.11
SIX3O95343 RNU6-1013P-201ENST00000384180 107 ntBASIC1.9□□□□□ -2.11
SIX3O95343 TRAJ49-201ENST00000390488 56 ntAPPRIS P1 BASIC1.9□□□□□ -2.11
SIX3O95343 U8.13-201ENST00000390842 128 ntBASIC1.9□□□□□ -2.11
SIX3O95343 RNU2-20P-201ENST00000410425 191 ntBASIC1.9□□□□□ -2.11
SIX3O95343 AL590632.1-201ENST00000424289 371 ntBASIC1.9□□□□□ -2.11
SIX3O95343 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC1.9□□□□□ -2.11
SIX3O95343 MTND4LP16-201ENST00000440828 295 ntBASIC1.9□□□□□ -2.11
SIX3O95343 AC007395.1-201ENST00000451333 677 ntBASIC1.9□□□□□ -2.11
Retrieved 100 of 98,524 protein–RNA pairs in 103.2 ms