Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 RNU6-276P-201ENST00000516114 96 ntBASIC0.18□□□□□ -2.38
HMGB3O15347 RNU1-142P-201ENST00000516682 145 ntBASIC0.18□□□□□ -2.38
HMGB3O15347 AP003174.2-201ENST00000544663 294 ntTSL 3 BASIC0.18□□□□□ -2.38
HMGB3O15347 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC0.18□□□□□ -2.38
HMGB3O15347 MTATP6P3-201ENST00000581686 676 ntBASIC0.18□□□□□ -2.38
HMGB3O15347 MIR5093-201ENST00000583199 100 ntBASIC0.18□□□□□ -2.38
HMGB3O15347 AL162424.1-201ENST00000602325 221 ntBASIC0.18□□□□□ -2.38
HMGB3O15347 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC0.18□□□□□ -2.38
HMGB3O15347 MTND5P16-201ENST00000460269 1703 ntBASIC0.18□□□□□ -2.38
HMGB3O15347 SNORA2.2-201ENST00000365473 135 ntBASIC0.17□□□□□ -2.38
HMGB3O15347 Y_RNA.504-201ENST00000384481 104 ntBASIC0.17□□□□□ -2.38
HMGB3O15347 MRPL42P3-201ENST00000401492 326 ntBASIC0.17□□□□□ -2.38
HMGB3O15347 AL356583.2-201ENST00000426536 280 ntBASIC0.17□□□□□ -2.38
HMGB3O15347 AC005019.2-201ENST00000434321 359 ntTSL 5 BASIC0.17□□□□□ -2.38
HMGB3O15347 RPS24P1-201ENST00000438550 371 ntBASIC0.17□□□□□ -2.38
HMGB3O15347 MTND3P1-201ENST00000441336 220 ntBASIC0.17□□□□□ -2.38
HMGB3O15347 AC025428.1-201ENST00000444137 403 ntTSL 3 BASIC0.17□□□□□ -2.38
HMGB3O15347 RPS29P1-201ENST00000465274 159 ntBASIC0.17□□□□□ -2.38
HMGB3O15347 AC108740.1-201ENST00000498629 225 ntBASIC0.17□□□□□ -2.38
HMGB3O15347 AC105313.1-201ENST00000509121 353 ntBASIC0.17□□□□□ -2.38
HMGB3O15347 RNU6-917P-201ENST00000516294 104 ntBASIC0.17□□□□□ -2.38
HMGB3O15347 AP002001.1-203ENST00000534002 267 ntBASIC0.17□□□□□ -2.38
HMGB3O15347 ZNF519P3-201ENST00000557158 1032 ntBASIC0.17□□□□□ -2.38
HMGB3O15347 AC066612.2-201ENST00000559875 695 ntTSL 2 BASIC0.17□□□□□ -2.38
HMGB3O15347 AC004584.2-201ENST00000570407 410 ntBASIC0.17□□□□□ -2.38
HMGB3O15347 MIR4778-201ENST00000577635 80 ntBASIC0.17□□□□□ -2.38
HMGB3O15347 AL512605.2-201ENST00000592972 256 ntBASIC0.17□□□□□ -2.38
HMGB3O15347 AC146944.4-201ENST00000602697 718 ntBASIC0.17□□□□□ -2.38
HMGB3O15347 AC006001.4-201ENST00000622243 395 ntBASIC0.17□□□□□ -2.38
HMGB3O15347 LINC02033-202ENST00000623312 492 ntTSL 3 BASIC0.17□□□□□ -2.38
HMGB3O15347 AC244517.7-201ENST00000625144 398 ntTSL 3 BASIC0.17□□□□□ -2.38
HMGB3O15347 AC019226.2-201ENST00000625973 424 ntBASIC0.17□□□□□ -2.38
HMGB3O15347 E2F5-208ENST00000521429 1551 ntTSL 5 BASIC0.16□□□□□ -2.38
HMGB3O15347 MIRLET7D-201ENST00000362263 87 ntBASIC0.16□□□□□ -2.38
HMGB3O15347 Y_RNA.22-201ENST00000362492 102 ntBASIC0.16□□□□□ -2.38
HMGB3O15347 VTRNA1-3-201ENST00000365645 89 ntBASIC0.16□□□□□ -2.38
HMGB3O15347 MIR549A-201ENST00000385268 96 ntBASIC0.16□□□□□ -2.38
HMGB3O15347 RNU6-1093P-201ENST00000391194 107 ntBASIC0.16□□□□□ -2.38
HMGB3O15347 SNAP23-203ENST00000397138 477 ntTSL 1 (best) BASIC0.16□□□□□ -2.38
HMGB3O15347 MIR1253-201ENST00000408273 105 ntBASIC0.16□□□□□ -2.38
HMGB3O15347 RNU6-321P-201ENST00000410912 106 ntBASIC0.16□□□□□ -2.38
HMGB3O15347 AC018511.2-201ENST00000413431 189 ntTSL 3 BASIC0.16□□□□□ -2.38
HMGB3O15347 AL117339.3-201ENST00000418733 162 ntBASIC0.16□□□□□ -2.38
HMGB3O15347 PPEF1-AS1-201ENST00000430641 430 ntTSL 5 BASIC0.16□□□□□ -2.38
HMGB3O15347 DAP3P1-201ENST00000441522 278 ntBASIC0.16□□□□□ -2.38
HMGB3O15347 Z68323.1-201ENST00000450365 519 ntTSL 3 BASIC0.16□□□□□ -2.38
HMGB3O15347 AC079382.1-201ENST00000493346 557 ntBASIC0.16□□□□□ -2.38
HMGB3O15347 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC0.16□□□□□ -2.38
HMGB3O15347 LINC01218-201ENST00000515150 481 ntTSL 3 BASIC0.16□□□□□ -2.38
HMGB3O15347 AC027419.1-201ENST00000522976 328 ntBASIC0.16□□□□□ -2.38
HMGB3O15347 MTND1P15-201ENST00000579262 949 ntBASIC0.16□□□□□ -2.38
HMGB3O15347 Z99497.2-201ENST00000603634 310 ntBASIC0.16□□□□□ -2.38
HMGB3O15347 AC092354.1-201ENST00000606057 376 ntBASIC0.16□□□□□ -2.38
HMGB3O15347 AL359075.3-201ENST00000613288 217 ntBASIC0.16□□□□□ -2.38
HMGB3O15347 CALCRL-202ENST00000409998 5223 ntAPPRIS P1 TSL 5 BASIC0.15□□□□□ -2.39
HMGB3O15347 IL6ST-202ENST00000381286 201 ntTSL 1 (best) BASIC0.15□□□□□ -2.39
HMGB3O15347 RNU6-641P-201ENST00000384006 107 ntBASIC0.15□□□□□ -2.39
HMGB3O15347 MIR216A-201ENST00000385063 110 ntBASIC0.15□□□□□ -2.39
HMGB3O15347 AC016909.1-201ENST00000415916 166 ntBASIC0.15□□□□□ -2.39
HMGB3O15347 MTND3P17-201ENST00000416968 344 ntBASIC0.15□□□□□ -2.39
HMGB3O15347 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC0.15□□□□□ -2.39
HMGB3O15347 AC244098.3-201ENST00000424803 96 ntBASIC0.15□□□□□ -2.39
HMGB3O15347 AC245047.3-201ENST00000429428 127 ntBASIC0.15□□□□□ -2.39
HMGB3O15347 AF124730.1-201ENST00000430001 327 ntTSL 2 BASIC0.15□□□□□ -2.39
HMGB3O15347 RPL23AP50-201ENST00000434149 455 ntBASIC0.15□□□□□ -2.39
HMGB3O15347 snoU13.25-201ENST00000458945 104 ntBASIC0.15□□□□□ -2.39
HMGB3O15347 RNU6-1110P-201ENST00000516462 101 ntBASIC0.15□□□□□ -2.39
HMGB3O15347 AC004832.4-201ENST00000608952 331 ntBASIC0.15□□□□□ -2.39
HMGB3O15347 AL391903.3-201ENST00000612158 163 ntBASIC0.15□□□□□ -2.39
HMGB3O15347 AC243829.3-201ENST00000622177 108 ntBASIC0.15□□□□□ -2.39
HMGB3O15347 ANGPTL3-201ENST00000371129 2805 ntAPPRIS P1 TSL 1 (best) BASIC0.15□□□□□ -2.39
HMGB3O15347 PTPN22-203ENST00000460620 1794 ntTSL 1 (best) BASIC0.14□□□□□ -2.39
HMGB3O15347 RPL37P21-201ENST00000435890 276 ntBASIC0.14□□□□□ -2.39
HMGB3O15347 AC010587.1-201ENST00000505809 469 ntBASIC0.14□□□□□ -2.39
HMGB3O15347 AC025465.4-201ENST00000513422 638 ntBASIC0.14□□□□□ -2.39
HMGB3O15347 AC108729.3-201ENST00000513484 108 ntBASIC0.14□□□□□ -2.39
HMGB3O15347 AC116347.2-201ENST00000514912 523 ntBASIC0.14□□□□□ -2.39
HMGB3O15347 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC0.14□□□□□ -2.39
HMGB3O15347 SUB1P2-201ENST00000556401 297 ntBASIC0.14□□□□□ -2.39
HMGB3O15347 BNIP3P40-201ENST00000596017 556 ntBASIC0.14□□□□□ -2.39
HMGB3O15347 AP001836.1-201ENST00000604675 523 ntBASIC0.14□□□□□ -2.39
HMGB3O15347 AL158042.1-201ENST00000605338 460 ntBASIC0.14□□□□□ -2.39
HMGB3O15347 AC005562.2-201ENST00000618264 111 ntBASIC0.14□□□□□ -2.39
HMGB3O15347 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC0.14□□□□□ -2.39
HMGB3O15347 RNU6-1327P-201ENST00000365302 105 ntBASIC0.13□□□□□ -2.39
HMGB3O15347 RNU6-1067P-201ENST00000384752 107 ntBASIC0.13□□□□□ -2.39
HMGB3O15347 Y_RNA.576-201ENST00000384781 102 ntBASIC0.13□□□□□ -2.39
HMGB3O15347 RNU6ATAC4P-201ENST00000387446 126 ntBASIC0.13□□□□□ -2.39
HMGB3O15347 LINC02263-203ENST00000426240 515 ntTSL 5 BASIC0.13□□□□□ -2.39
HMGB3O15347 AC119618.1-201ENST00000434191 222 ntBASIC0.13□□□□□ -2.39
HMGB3O15347 ZNF736P4Y-201ENST00000454995 1243 ntBASIC0.13□□□□□ -2.39
HMGB3O15347 AC092296.3-201ENST00000589968 249 ntTSL 3 BASIC0.13□□□□□ -2.39
HMGB3O15347 AC136443.5-201ENST00000603741 370 ntBASIC0.13□□□□□ -2.39
HMGB3O15347 RAC1P9-201ENST00000604990 392 ntBASIC0.13□□□□□ -2.39
HMGB3O15347 AL138726.1-201ENST00000614873 333 ntBASIC0.13□□□□□ -2.39
HMGB3O15347 AC010722.1-201ENST00000622595 582 ntTSL 5 BASIC0.13□□□□□ -2.39
HMGB3O15347 AL445984.1-201ENST00000637834 659 ntBASIC0.13□□□□□ -2.39
HMGB3O15347 RNU6-809P-201ENST00000384461 107 ntBASIC0.12□□□□□ -2.39
HMGB3O15347 ISCA1P6-201ENST00000427740 390 ntBASIC0.12□□□□□ -2.39
HMGB3O15347 AL445305.1-201ENST00000432577 575 ntBASIC0.12□□□□□ -2.39
Retrieved 100 of 98,524 protein–RNA pairs in 110.6 ms