Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 RAP1BP2-201ENST00000478270 544 ntBASIC0.4□□□□□ -2.35
TRAV1-1A0A0B4J248 RNA5SP255-201ENST00000516370 107 ntBASIC0.4□□□□□ -2.35
TRAV1-1A0A0B4J248 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.4□□□□□ -2.35
TRAV1-1A0A0B4J248 AC104458.1-201ENST00000608243 463 ntBASIC0.4□□□□□ -2.35
TRAV1-1A0A0B4J248 GHRLOS.1-201ENST00000610995 70 ntBASIC0.4□□□□□ -2.35
TRAV1-1A0A0B4J248 AC008250.2-201ENST00000615261 205 ntBASIC0.4□□□□□ -2.35
TRAV1-1A0A0B4J248 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC0.4□□□□□ -2.35
TRAV1-1A0A0B4J248 AC107308.1-201ENST00000615897 301 ntBASIC0.4□□□□□ -2.35
TRAV1-1A0A0B4J248 AC022709.1-201ENST00000615967 87 ntBASIC0.4□□□□□ -2.35
TRAV1-1A0A0B4J248 AL607023.1-201ENST00000620045 248 ntBASIC0.4□□□□□ -2.35
TRAV1-1A0A0B4J248 RNU6-1303P-201ENST00000364841 107 ntBASIC0.39□□□□□ -2.35
TRAV1-1A0A0B4J248 RNU1-133P-201ENST00000364867 167 ntBASIC0.39□□□□□ -2.35
TRAV1-1A0A0B4J248 RNU6-116P-201ENST00000384042 109 ntBASIC0.39□□□□□ -2.35
TRAV1-1A0A0B4J248 SNORA36A-201ENST00000384221 132 ntBASIC0.39□□□□□ -2.35
TRAV1-1A0A0B4J248 RNU6-975P-201ENST00000384296 105 ntBASIC0.39□□□□□ -2.35
TRAV1-1A0A0B4J248 RNU6-505P-201ENST00000384427 107 ntBASIC0.39□□□□□ -2.35
TRAV1-1A0A0B4J248 SNORA80D-201ENST00000384488 135 ntBASIC0.39□□□□□ -2.35
TRAV1-1A0A0B4J248 RNU6-110P-201ENST00000384508 104 ntBASIC0.39□□□□□ -2.35
TRAV1-1A0A0B4J248 SNORA40.4-201ENST00000390971 128 ntBASIC0.39□□□□□ -2.35
TRAV1-1A0A0B4J248 RNU6-550P-201ENST00000391057 101 ntBASIC0.39□□□□□ -2.35
TRAV1-1A0A0B4J248 MIR208B-201ENST00000401172 77 ntBASIC0.39□□□□□ -2.35
TRAV1-1A0A0B4J248 MRPL42P2-201ENST00000403169 426 ntBASIC0.39□□□□□ -2.35
TRAV1-1A0A0B4J248 LINC01717-201ENST00000415754 527 ntTSL 5 BASIC0.39□□□□□ -2.35
TRAV1-1A0A0B4J248 RPS26P5-201ENST00000418544 335 ntBASIC0.39□□□□□ -2.35
TRAV1-1A0A0B4J248 NCOA7-AS1-201ENST00000429007 501 ntTSL 3 BASIC0.39□□□□□ -2.35
TRAV1-1A0A0B4J248 LINC00844-201ENST00000432535 477 ntTSL 2 BASIC0.39□□□□□ -2.35
TRAV1-1A0A0B4J248 MTCO2P6-201ENST00000463134 685 ntBASIC0.39□□□□□ -2.35
TRAV1-1A0A0B4J248 AC105758.1-201ENST00000506038 399 ntBASIC0.39□□□□□ -2.35
TRAV1-1A0A0B4J248 RPS3A-208ENST00000509736 576 ntTSL 2 BASIC0.39□□□□□ -2.35
TRAV1-1A0A0B4J248 OCIAD1-AS1-201ENST00000513576 265 ntTSL 3 BASIC0.39□□□□□ -2.35
TRAV1-1A0A0B4J248 RNU6-1146P-201ENST00000516282 102 ntBASIC0.39□□□□□ -2.35
TRAV1-1A0A0B4J248 AC087277.2-201ENST00000533203 151 ntTSL 5 BASIC0.39□□□□□ -2.35
TRAV1-1A0A0B4J248 AC025423.5-201ENST00000550230 219 ntBASIC0.39□□□□□ -2.35
TRAV1-1A0A0B4J248 AC009558.1-201ENST00000561174 581 ntTSL 4 BASIC0.39□□□□□ -2.35
TRAV1-1A0A0B4J248 MIR4999-201ENST00000585029 91 ntBASIC0.39□□□□□ -2.35
TRAV1-1A0A0B4J248 AP001836.1-201ENST00000604675 523 ntBASIC0.39□□□□□ -2.35
TRAV1-1A0A0B4J248 AC018714.1-201ENST00000605028 208 ntBASIC0.39□□□□□ -2.35
TRAV1-1A0A0B4J248 U6.108-201ENST00000637764 58 ntBASIC0.39□□□□□ -2.35
TRAV1-1A0A0B4J248 AC023934.1-201ENST00000574529 2389 ntBASIC0.39□□□□□ -2.35
TRAV1-1A0A0B4J248 MGST1-207ENST00000535309 1331 ntTSL 1 (best) BASIC0.38□□□□□ -2.35
TRAV1-1A0A0B4J248 SNORD18A-201ENST00000363753 72 ntBASIC0.38□□□□□ -2.35
TRAV1-1A0A0B4J248 RNU6-715P-201ENST00000365204 103 ntBASIC0.38□□□□□ -2.35
TRAV1-1A0A0B4J248 RNU6-169P-201ENST00000365336 107 ntBASIC0.38□□□□□ -2.35
TRAV1-1A0A0B4J248 SNORA12.1-201ENST00000390873 148 ntBASIC0.38□□□□□ -2.35
TRAV1-1A0A0B4J248 AC005009.1-201ENST00000423979 269 ntTSL 2 BASIC0.38□□□□□ -2.35
TRAV1-1A0A0B4J248 SRRM1P2-201ENST00000464531 1192 ntBASIC0.38□□□□□ -2.35
TRAV1-1A0A0B4J248 AC098869.1-201ENST00000481627 292 ntBASIC0.38□□□□□ -2.35
TRAV1-1A0A0B4J248 AC010486.2-201ENST00000505572 483 ntBASIC0.38□□□□□ -2.35
TRAV1-1A0A0B4J248 APELA-204ENST00000515275 551 ntAPPRIS P1 TSL 3 BASIC0.38□□□□□ -2.35
TRAV1-1A0A0B4J248 SCARNA24.1-201ENST00000516465 137 ntBASIC0.38□□□□□ -2.35
TRAV1-1A0A0B4J248 AC087362.2-201ENST00000529325 256 ntTSL 3 BASIC0.38□□□□□ -2.35
TRAV1-1A0A0B4J248 APOOP3-201ENST00000536787 586 ntBASIC0.38□□□□□ -2.35
TRAV1-1A0A0B4J248 MIR4714-201ENST00000580728 77 ntBASIC0.38□□□□□ -2.35
TRAV1-1A0A0B4J248 AC022217.4-201ENST00000604389 163 ntBASIC0.38□□□□□ -2.35
TRAV1-1A0A0B4J248 AL353765.1-201ENST00000605514 183 ntBASIC0.38□□□□□ -2.35
TRAV1-1A0A0B4J248 RNU4-5P-201ENST00000607255 135 ntBASIC0.38□□□□□ -2.35
TRAV1-1A0A0B4J248 AP001596.2-201ENST00000608410 312 ntBASIC0.38□□□□□ -2.35
TRAV1-1A0A0B4J248 AC245297.3-203ENST00000612135 405 ntTSL 5 BASIC0.38□□□□□ -2.35
TRAV1-1A0A0B4J248 AC138058.1-201ENST00000620572 449 ntTSL 3 BASIC0.38□□□□□ -2.35
TRAV1-1A0A0B4J248 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC0.38□□□□□ -2.35
TRAV1-1A0A0B4J248 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC0.38□□□□□ -2.35
TRAV1-1A0A0B4J248 AC009878.1-201ENST00000621819 340 ntBASIC0.38□□□□□ -2.35
TRAV1-1A0A0B4J248 AC011155.2-201ENST00000623202 216 ntBASIC0.38□□□□□ -2.35
TRAV1-1A0A0B4J248 SNORD3E-202ENST00000627253 216 ntBASIC0.38□□□□□ -2.35
TRAV1-1A0A0B4J248 AP3S1-209ENST00000640413 489 ntTSL 5 BASIC0.38□□□□□ -2.35
TRAV1-1A0A0B4J248 PDCL2-201ENST00000295645 861 ntAPPRIS P1 TSL 1 (best) BASIC0.37□□□□□ -2.35
TRAV1-1A0A0B4J248 RNU6-1200P-201ENST00000384162 107 ntBASIC0.37□□□□□ -2.35
TRAV1-1A0A0B4J248 Y_RNA.504-201ENST00000384481 104 ntBASIC0.37□□□□□ -2.35
TRAV1-1A0A0B4J248 RNU6-1105P-201ENST00000384774 107 ntBASIC0.37□□□□□ -2.35
TRAV1-1A0A0B4J248 SNORD41-201ENST00000386967 70 ntBASIC0.37□□□□□ -2.35
TRAV1-1A0A0B4J248 RNA5SP467-201ENST00000391274 118 ntBASIC0.37□□□□□ -2.35
TRAV1-1A0A0B4J248 AC010154.1-201ENST00000425857 269 ntBASIC0.37□□□□□ -2.35
TRAV1-1A0A0B4J248 AC092813.2-201ENST00000434540 399 ntTSL 3 BASIC0.37□□□□□ -2.35
TRAV1-1A0A0B4J248 AL136972.1-201ENST00000443471 351 ntTSL 3 BASIC0.37□□□□□ -2.35
TRAV1-1A0A0B4J248 AL606662.1-201ENST00000445763 553 ntBASIC0.37□□□□□ -2.35
TRAV1-1A0A0B4J248 AL133217.1-201ENST00000450980 425 ntBASIC0.37□□□□□ -2.35
TRAV1-1A0A0B4J248 snoU109.3-201ENST00000459477 145 ntBASIC0.37□□□□□ -2.35
TRAV1-1A0A0B4J248 BET1P1-201ENST00000482276 359 ntBASIC0.37□□□□□ -2.35
TRAV1-1A0A0B4J248 RNU6-1220P-201ENST00000517126 108 ntBASIC0.37□□□□□ -2.35
TRAV1-1A0A0B4J248 SNORA25.17-201ENST00000517184 124 ntBASIC0.37□□□□□ -2.35
TRAV1-1A0A0B4J248 MIR4753-201ENST00000585119 83 ntBASIC0.37□□□□□ -2.35
TRAV1-1A0A0B4J248 AC091805.2-201ENST00000603848 235 ntBASIC0.37□□□□□ -2.35
TRAV1-1A0A0B4J248 AC104465.1-201ENST00000611365 139 ntBASIC0.37□□□□□ -2.35
TRAV1-1A0A0B4J248 AC009159.2-201ENST00000617603 606 ntBASIC0.37□□□□□ -2.35
TRAV1-1A0A0B4J248 MIR6513-201ENST00000621188 64 ntBASIC0.37□□□□□ -2.35
TRAV1-1A0A0B4J248 AL513423.1-201ENST00000621695 132 ntBASIC0.37□□□□□ -2.35
TRAV1-1A0A0B4J248 AL359697.1-201ENST00000624879 587 ntBASIC0.37□□□□□ -2.35
TRAV1-1A0A0B4J248 AC099654.13-201ENST00000639774 207 ntBASIC0.37□□□□□ -2.35
TRAV1-1A0A0B4J248 Y_RNA.36-201ENST00000362602 112 ntBASIC0.36□□□□□ -2.35
TRAV1-1A0A0B4J248 Y_RNA.354-201ENST00000365448 111 ntBASIC0.36□□□□□ -2.35
TRAV1-1A0A0B4J248 RNU6-417P-201ENST00000384712 107 ntBASIC0.36□□□□□ -2.35
TRAV1-1A0A0B4J248 MIR216A-201ENST00000385063 110 ntBASIC0.36□□□□□ -2.35
TRAV1-1A0A0B4J248 RN7SKP200-201ENST00000410564 320 ntBASIC0.36□□□□□ -2.35
TRAV1-1A0A0B4J248 RNU2-8P-201ENST00000410727 190 ntBASIC0.36□□□□□ -2.35
TRAV1-1A0A0B4J248 AL669831.2-201ENST00000422528 456 ntTSL 5 BASIC0.36□□□□□ -2.35
TRAV1-1A0A0B4J248 TIMM9P3-201ENST00000428659 274 ntBASIC0.36□□□□□ -2.35
TRAV1-1A0A0B4J248 CETN4P-201ENST00000432407 469 ntBASIC0.36□□□□□ -2.35
TRAV1-1A0A0B4J248 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC0.36□□□□□ -2.35
TRAV1-1A0A0B4J248 AC016717.1-201ENST00000448918 286 ntBASIC0.36□□□□□ -2.35
TRAV1-1A0A0B4J248 AL162395.1-201ENST00000457882 422 ntBASIC0.36□□□□□ -2.35
Retrieved 100 of 98,524 protein–RNA pairs in 11.3 ms