Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 Y_RNA.599-201ENST00000410489 109 ntBASIC2□□□□□ -2.09
PCDHGA1Q9Y5H4 RNU2-40P-201ENST00000410833 196 ntBASIC2□□□□□ -2.09
PCDHGA1Q9Y5H4 RNU6-1148P-201ENST00000410992 104 ntBASIC2□□□□□ -2.09
PCDHGA1Q9Y5H4 AC009161.1-201ENST00000417306 376 ntBASIC2□□□□□ -2.09
PCDHGA1Q9Y5H4 EIF4EP2-201ENST00000422816 654 ntBASIC2□□□□□ -2.09
PCDHGA1Q9Y5H4 AC012306.1-201ENST00000423267 114 ntBASIC2□□□□□ -2.09
PCDHGA1Q9Y5H4 HMGN2P19-201ENST00000425149 265 ntBASIC2□□□□□ -2.09
PCDHGA1Q9Y5H4 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2□□□□□ -2.09
PCDHGA1Q9Y5H4 AC002386.1-201ENST00000436714 398 ntTSL 2 BASIC2□□□□□ -2.09
PCDHGA1Q9Y5H4 AC110995.1-201ENST00000444185 628 ntTSL 3 BASIC2□□□□□ -2.09
PCDHGA1Q9Y5H4 MTND1P11-201ENST00000456661 876 ntBASIC2□□□□□ -2.09
PCDHGA1Q9Y5H4 AC093259.1-201ENST00000509755 300 ntBASIC2□□□□□ -2.09
PCDHGA1Q9Y5H4 RNU6-1053P-201ENST00000515930 101 ntBASIC2□□□□□ -2.09
PCDHGA1Q9Y5H4 RNU6-1314P-201ENST00000517139 104 ntBASIC2□□□□□ -2.09
PCDHGA1Q9Y5H4 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC2□□□□□ -2.09
PCDHGA1Q9Y5H4 AP003465.2-201ENST00000602571 373 ntBASIC2□□□□□ -2.09
PCDHGA1Q9Y5H4 AL133215.3-201ENST00000609801 448 ntBASIC2□□□□□ -2.09
PCDHGA1Q9Y5H4 AC005520.5-201ENST00000613926 164 ntBASIC2□□□□□ -2.09
PCDHGA1Q9Y5H4 AL136221.1-201ENST00000621449 509 ntBASIC2□□□□□ -2.09
PCDHGA1Q9Y5H4 AC100810.6-201ENST00000638068 285 ntBASIC2□□□□□ -2.09
PCDHGA1Q9Y5H4 AC242426.3-202ENST00000607149 2397 ntTSL 5 BASIC1.99□□□□□ -2.09
PCDHGA1Q9Y5H4 AC009487.4-201ENST00000624969 3585 ntBASIC1.99□□□□□ -2.09
PCDHGA1Q9Y5H4 SNORD115-3-201ENST00000363100 82 ntBASIC1.99□□□□□ -2.09
PCDHGA1Q9Y5H4 RNU6-95P-201ENST00000384697 107 ntBASIC1.99□□□□□ -2.09
PCDHGA1Q9Y5H4 TRAJ50-201ENST00000390487 60 ntAPPRIS P1 BASIC1.99□□□□□ -2.09
PCDHGA1Q9Y5H4 MIR1262-201ENST00000408276 93 ntBASIC1.99□□□□□ -2.09
PCDHGA1Q9Y5H4 SNRPG-202ENST00000413456 398 ntTSL 3 BASIC1.99□□□□□ -2.09
PCDHGA1Q9Y5H4 CYCSP49-201ENST00000420810 319 ntBASIC1.99□□□□□ -2.09
PCDHGA1Q9Y5H4 SNRPG-205ENST00000449935 428 ntTSL 1 (best) BASIC1.99□□□□□ -2.09
PCDHGA1Q9Y5H4 RNU7-187P-201ENST00000458985 68 ntBASIC1.99□□□□□ -2.09
PCDHGA1Q9Y5H4 AC116563.1-201ENST00000505454 396 ntTSL 3 BASIC1.99□□□□□ -2.09
PCDHGA1Q9Y5H4 AC114550.2-201ENST00000524008 397 ntTSL 3 BASIC1.99□□□□□ -2.09
PCDHGA1Q9Y5H4 AC022596.1-201ENST00000582895 302 ntTSL 5 BASIC1.99□□□□□ -2.09
PCDHGA1Q9Y5H4 AC023043.2-201ENST00000589678 1026 ntBASIC1.99□□□□□ -2.09
PCDHGA1Q9Y5H4 AC002984.1-201ENST00000591692 448 ntBASIC1.99□□□□□ -2.09
PCDHGA1Q9Y5H4 AC122108.2-201ENST00000611946 526 ntBASIC1.99□□□□□ -2.09
PCDHGA1Q9Y5H4 DSCR8-208ENST00000614538 403 ntAPPRIS P5 TSL 5 BASIC1.99□□□□□ -2.09
PCDHGA1Q9Y5H4 AC006504.8-201ENST00000621046 635 ntBASIC1.99□□□□□ -2.09
PCDHGA1Q9Y5H4 AC009033.1-201ENST00000624279 431 ntBASIC1.99□□□□□ -2.09
PCDHGA1Q9Y5H4 ZNF736P3Y-201ENST00000428264 1465 ntBASIC1.99□□□□□ -2.09
PCDHGA1Q9Y5H4 KNL1-204ENST00000527044 5404 ntTSL 5 BASIC1.98□□□□□ -2.09
PCDHGA1Q9Y5H4 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC1.98□□□□□ -2.09
PCDHGA1Q9Y5H4 RNU6-562P-201ENST00000362731 107 ntBASIC1.98□□□□□ -2.09
PCDHGA1Q9Y5H4 U3.9-201ENST00000363823 204 ntBASIC1.98□□□□□ -2.09
PCDHGA1Q9Y5H4 Y_RNA.212-201ENST00000364177 102 ntBASIC1.98□□□□□ -2.09
PCDHGA1Q9Y5H4 RNA5SP37-201ENST00000365420 130 ntBASIC1.98□□□□□ -2.09
PCDHGA1Q9Y5H4 BTLA-202ENST00000383680 726 ntAPPRIS ALT2 TSL 1 (best) BASIC1.98□□□□□ -2.09
PCDHGA1Q9Y5H4 SNORD116-11-201ENST00000383882 92 ntBASIC1.98□□□□□ -2.09
PCDHGA1Q9Y5H4 RNU6-378P-201ENST00000384324 107 ntBASIC1.98□□□□□ -2.09
PCDHGA1Q9Y5H4 RNU6-933P-201ENST00000384424 107 ntBASIC1.98□□□□□ -2.09
PCDHGA1Q9Y5H4 RNA5SP213-201ENST00000391031 106 ntBASIC1.98□□□□□ -2.09
PCDHGA1Q9Y5H4 PIGP-205ENST00000399103 656 ntAPPRIS P1 TSL 1 (best) BASIC1.98□□□□□ -2.09
PCDHGA1Q9Y5H4 Y_RNA.595-201ENST00000410403 105 ntBASIC1.98□□□□□ -2.09
PCDHGA1Q9Y5H4 Y_RNA.619-201ENST00000410951 90 ntBASIC1.98□□□□□ -2.09
PCDHGA1Q9Y5H4 AC244636.1-201ENST00000421152 228 ntBASIC1.98□□□□□ -2.09
PCDHGA1Q9Y5H4 AC133865.1-201ENST00000438619 339 ntTSL 3 BASIC1.98□□□□□ -2.09
PCDHGA1Q9Y5H4 FGF7P6-202ENST00000451282 293 ntBASIC1.98□□□□□ -2.09
PCDHGA1Q9Y5H4 AC021146.2-201ENST00000504736 556 ntBASIC1.98□□□□□ -2.09
PCDHGA1Q9Y5H4 AC005741.1-201ENST00000511094 432 ntBASIC1.98□□□□□ -2.09
PCDHGA1Q9Y5H4 RNU6-864P-201ENST00000516256 108 ntBASIC1.98□□□□□ -2.09
PCDHGA1Q9Y5H4 LINC02155-201ENST00000519215 407 ntTSL 5 BASIC1.98□□□□□ -2.09
PCDHGA1Q9Y5H4 AC091944.1-201ENST00000521984 449 ntTSL 3 BASIC1.98□□□□□ -2.09
PCDHGA1Q9Y5H4 AC100763.1-201ENST00000532735 522 ntTSL 3 BASIC1.98□□□□□ -2.09
PCDHGA1Q9Y5H4 AL049869.2-201ENST00000556634 365 ntTSL 2 BASIC1.98□□□□□ -2.09
PCDHGA1Q9Y5H4 PWRN1-203ENST00000564898 389 ntTSL 5 BASIC1.98□□□□□ -2.09
PCDHGA1Q9Y5H4 AC099518.4-202ENST00000576433 455 ntTSL 2 BASIC1.98□□□□□ -2.09
PCDHGA1Q9Y5H4 MIR3942-201ENST00000585264 109 ntBASIC1.98□□□□□ -2.09
PCDHGA1Q9Y5H4 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC1.98□□□□□ -2.09
PCDHGA1Q9Y5H4 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC1.98□□□□□ -2.09
PCDHGA1Q9Y5H4 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC1.98□□□□□ -2.09
PCDHGA1Q9Y5H4 GS1-279B7.1-204ENST00000641809 378 ntBASIC1.98□□□□□ -2.09
PCDHGA1Q9Y5H4 SCN7A-206ENST00000619410 7186 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
PCDHGA1Q9Y5H4 SCN7A-207ENST00000621965 7186 ntAPPRIS P1 TSL 5 BASIC1.97□□□□□ -2.09
PCDHGA1Q9Y5H4 Y_RNA.123-201ENST00000363338 102 ntBASIC1.97□□□□□ -2.09
PCDHGA1Q9Y5H4 Y_RNA.164-201ENST00000363709 102 ntBASIC1.97□□□□□ -2.09
PCDHGA1Q9Y5H4 SNORA29-201ENST00000384183 140 ntBASIC1.97□□□□□ -2.09
PCDHGA1Q9Y5H4 RNU6-784P-201ENST00000384330 106 ntBASIC1.97□□□□□ -2.09
PCDHGA1Q9Y5H4 RNU6-831P-201ENST00000384548 107 ntBASIC1.97□□□□□ -2.09
PCDHGA1Q9Y5H4 RNU6-160P-201ENST00000384591 107 ntBASIC1.97□□□□□ -2.09
PCDHGA1Q9Y5H4 MIR521-1-201ENST00000384902 87 ntBASIC1.97□□□□□ -2.09
PCDHGA1Q9Y5H4 MRLN-201ENST00000414264 422 ntAPPRIS P2 TSL 1 (best) BASIC1.97□□□□□ -2.09
PCDHGA1Q9Y5H4 AL590632.1-201ENST00000424289 371 ntBASIC1.97□□□□□ -2.09
PCDHGA1Q9Y5H4 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC1.97□□□□□ -2.09
PCDHGA1Q9Y5H4 LINC02276-201ENST00000508388 138 ntTSL 3 BASIC1.97□□□□□ -2.09
PCDHGA1Q9Y5H4 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC1.97□□□□□ -2.09
PCDHGA1Q9Y5H4 AC027018.1-202ENST00000534723 383 ntTSL 3 BASIC1.97□□□□□ -2.09
PCDHGA1Q9Y5H4 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC1.97□□□□□ -2.09
PCDHGA1Q9Y5H4 EIF4A1P12-201ENST00000551910 141 ntBASIC1.97□□□□□ -2.09
PCDHGA1Q9Y5H4 AC109446.1-201ENST00000566172 220 ntBASIC1.97□□□□□ -2.09
PCDHGA1Q9Y5H4 FGF7P1-201ENST00000582820 288 ntBASIC1.97□□□□□ -2.09
PCDHGA1Q9Y5H4 AC104819.3-201ENST00000603264 540 ntTSL 4 BASIC1.97□□□□□ -2.09
PCDHGA1Q9Y5H4 AC009994.1-201ENST00000606889 253 ntBASIC1.97□□□□□ -2.09
PCDHGA1Q9Y5H4 AC092794.1-201ENST00000612734 582 ntBASIC1.97□□□□□ -2.09
PCDHGA1Q9Y5H4 AC130454.1-201ENST00000622948 401 ntBASIC1.97□□□□□ -2.09
PCDHGA1Q9Y5H4 AL160394.1-201ENST00000624765 724 ntBASIC1.97□□□□□ -2.09
PCDHGA1Q9Y5H4 ETDC-201ENST00000635820 180 ntAPPRIS P1 BASIC1.97□□□□□ -2.09
PCDHGA1Q9Y5H4 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC1.97□□□□□ -2.09
PCDHGA1Q9Y5H4 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC1.97□□□□□ -2.09
PCDHGA1Q9Y5H4 XIRP2-201ENST00000295237 5246 ntTSL 2 BASIC1.97□□□□□ -2.09
PCDHGA1Q9Y5H4 WWP1P1-201ENST00000466609 2769 ntBASIC1.96□□□□□ -2.1
Retrieved 100 of 98,524 protein–RNA pairs in 125.1 ms