Protein–RNA interactions for Protein: Q9Y3X0

CCDC9, Coiled-coil domain-containing protein 9, humanhuman

Known RBP Predictions only

Length 531 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC9Q9Y3X0 RPS23P5-201ENST00000495419 428 ntBASIC3.91□□□□□ -1.78
CCDC9Q9Y3X0 AC008243.1-201ENST00000504955 389 ntTSL 3 BASIC3.91□□□□□ -1.78
CCDC9Q9Y3X0 SNORD116.3-201ENST00000517176 78 ntBASIC3.91□□□□□ -1.78
CCDC9Q9Y3X0 AC091144.1-201ENST00000519573 138 ntBASIC3.91□□□□□ -1.78
CCDC9Q9Y3X0 AC144568.1-201ENST00000520139 137 ntBASIC3.91□□□□□ -1.78
CCDC9Q9Y3X0 AC007536.1-201ENST00000533382 349 ntBASIC3.91□□□□□ -1.78
CCDC9Q9Y3X0 AP002770.2-201ENST00000543613 532 ntBASIC3.91□□□□□ -1.78
CCDC9Q9Y3X0 AC090510.1-201ENST00000567456 425 ntTSL 3 BASIC3.91□□□□□ -1.78
CCDC9Q9Y3X0 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC3.91□□□□□ -1.78
CCDC9Q9Y3X0 MIR5006-201ENST00000583027 110 ntBASIC3.91□□□□□ -1.78
CCDC9Q9Y3X0 AL080274.1-201ENST00000605565 220 ntBASIC3.91□□□□□ -1.78
CCDC9Q9Y3X0 C1orf141-205ENST00000475209 2079 ntAPPRIS ALT2 TSL 5 BASIC3.91□□□□□ -1.78
CCDC9Q9Y3X0 OGN-202ENST00000375561 2743 ntAPPRIS P1 TSL 1 (best) BASIC3.91□□□□□ -1.78
CCDC9Q9Y3X0 RNU6-245P-201ENST00000384020 107 ntBASIC3.9□□□□□ -1.79
CCDC9Q9Y3X0 RNU6-611P-201ENST00000384276 104 ntBASIC3.9□□□□□ -1.79
CCDC9Q9Y3X0 AL358234.1-201ENST00000421132 273 ntTSL 5 BASIC3.9□□□□□ -1.79
CCDC9Q9Y3X0 AC004386.2-201ENST00000441858 148 ntBASIC3.9□□□□□ -1.79
CCDC9Q9Y3X0 LINC01564-201ENST00000448327 566 ntTSL 3 BASIC3.9□□□□□ -1.79
CCDC9Q9Y3X0 LEKR1-205ENST00000477399 621 ntTSL 2 BASIC3.9□□□□□ -1.79
CCDC9Q9Y3X0 RNU6-1114P-201ENST00000516022 107 ntBASIC3.9□□□□□ -1.79
CCDC9Q9Y3X0 RNU2-44P-201ENST00000516795 194 ntBASIC3.9□□□□□ -1.79
CCDC9Q9Y3X0 AC034114.1-201ENST00000520293 285 ntBASIC3.9□□□□□ -1.79
CCDC9Q9Y3X0 ATP2B1-201ENST00000261173 6777 ntAPPRIS P1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC9Q9Y3X0 MIER3-203ENST00000381213 5198 ntAPPRIS P3 TSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC9Q9Y3X0 PTBP2-211ENST00000609116 12014 ntAPPRIS ALT1 TSL 1 (best) BASIC3.9□□□□□ -1.79
CCDC9Q9Y3X0 CEP70-211ENST00000484888 1993 ntAPPRIS P3 TSL 5 BASIC3.89□□□□□ -1.79
CCDC9Q9Y3X0 OR5V1-217ENST00000641768 2763 ntAPPRIS P1 BASIC3.89□□□□□ -1.79
CCDC9Q9Y3X0 RNU6-222P-201ENST00000362438 107 ntBASIC3.89□□□□□ -1.79
CCDC9Q9Y3X0 RNU6-859P-201ENST00000362728 107 ntBASIC3.89□□□□□ -1.79
CCDC9Q9Y3X0 VTRNA1-1-201ENST00000363120 99 ntBASIC3.89□□□□□ -1.79
CCDC9Q9Y3X0 RNU6-1026P-201ENST00000384465 108 ntBASIC3.89□□□□□ -1.79
CCDC9Q9Y3X0 SNORA69.1-201ENST00000390904 137 ntBASIC3.89□□□□□ -1.79
CCDC9Q9Y3X0 RNU6-159P-201ENST00000391080 106 ntBASIC3.89□□□□□ -1.79
CCDC9Q9Y3X0 AC023051.1-201ENST00000414098 876 ntTSL 5 BASIC3.89□□□□□ -1.79
CCDC9Q9Y3X0 AL445305.1-201ENST00000432577 575 ntBASIC3.89□□□□□ -1.79
CCDC9Q9Y3X0 TRBV25OR9-2-201ENST00000438417 374 ntBASIC3.89□□□□□ -1.79
CCDC9Q9Y3X0 AC068580.2-201ENST00000449749 338 ntTSL 5 BASIC3.89□□□□□ -1.79
CCDC9Q9Y3X0 AC012312.1-201ENST00000503710 527 ntTSL 2 BASIC3.89□□□□□ -1.79
CCDC9Q9Y3X0 SNORA4.4-201ENST00000515921 135 ntBASIC3.89□□□□□ -1.79
CCDC9Q9Y3X0 AC090617.3-201ENST00000573670 475 ntBASIC3.89□□□□□ -1.79
CCDC9Q9Y3X0 MIR5695-201ENST00000579717 85 ntBASIC3.89□□□□□ -1.79
CCDC9Q9Y3X0 MIR1248-201ENST00000629190 106 ntBASIC3.89□□□□□ -1.79
CCDC9Q9Y3X0 RNU6-874P-201ENST00000362390 105 ntBASIC3.88□□□□□ -1.79
CCDC9Q9Y3X0 Y_RNA.358-201ENST00000365491 99 ntBASIC3.88□□□□□ -1.79
CCDC9Q9Y3X0 Y_RNA.605-201ENST00000410577 105 ntBASIC3.88□□□□□ -1.79
CCDC9Q9Y3X0 AC006159.2-201ENST00000421965 692 ntTSL 2 BASIC3.88□□□□□ -1.79
CCDC9Q9Y3X0 MRPS18CP6-201ENST00000423587 223 ntBASIC3.88□□□□□ -1.79
CCDC9Q9Y3X0 AC096711.1-201ENST00000510967 347 ntTSL 5 BASIC3.88□□□□□ -1.79
CCDC9Q9Y3X0 SNORA25.14-201ENST00000516481 132 ntBASIC3.88□□□□□ -1.79
CCDC9Q9Y3X0 RNU6-1098P-201ENST00000516772 96 ntBASIC3.88□□□□□ -1.79
CCDC9Q9Y3X0 CPSF6-207ENST00000551516 234 ntTSL 2 BASIC3.88□□□□□ -1.79
CCDC9Q9Y3X0 UBL5P4-201ENST00000562584 236 ntBASIC3.88□□□□□ -1.79
CCDC9Q9Y3X0 AL132822.1-201ENST00000617063 513 ntBASIC3.88□□□□□ -1.79
CCDC9Q9Y3X0 Clostridiales-1.2-201ENST00000636724 160 ntBASIC3.88□□□□□ -1.79
CCDC9Q9Y3X0 WDR3-201ENST00000349139 9974 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC9Q9Y3X0 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
CCDC9Q9Y3X0 ZBED5-202ENST00000432999 2741 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
CCDC9Q9Y3X0 AC073325.2-201ENST00000339545 159 ntBASIC3.87□□□□□ -1.79
CCDC9Q9Y3X0 MIR369-201ENST00000362155 70 ntBASIC3.87□□□□□ -1.79
CCDC9Q9Y3X0 RNU1-76P-201ENST00000362903 159 ntBASIC3.87□□□□□ -1.79
CCDC9Q9Y3X0 RNU6-873P-201ENST00000363833 107 ntBASIC3.87□□□□□ -1.79
CCDC9Q9Y3X0 RNU1-139P-201ENST00000391307 165 ntBASIC3.87□□□□□ -1.79
CCDC9Q9Y3X0 RNU4ATAC16P-201ENST00000408512 126 ntBASIC3.87□□□□□ -1.79
CCDC9Q9Y3X0 RN7SKP123-201ENST00000410732 291 ntBASIC3.87□□□□□ -1.79
CCDC9Q9Y3X0 AC114482.1-201ENST00000418010 247 ntBASIC3.87□□□□□ -1.79
CCDC9Q9Y3X0 WARS2P1-201ENST00000429678 537 ntBASIC3.87□□□□□ -1.79
CCDC9Q9Y3X0 MTCO3P8-201ENST00000453691 755 ntBASIC3.87□□□□□ -1.79
CCDC9Q9Y3X0 RNU7-14P-201ENST00000459331 62 ntBASIC3.87□□□□□ -1.79
CCDC9Q9Y3X0 RNA5SP490-201ENST00000517141 136 ntBASIC3.87□□□□□ -1.79
CCDC9Q9Y3X0 ACTG1P17-203ENST00000561222 537 ntTSL 3 BASIC3.87□□□□□ -1.79
CCDC9Q9Y3X0 MIR3126-201ENST00000577443 74 ntBASIC3.87□□□□□ -1.79
CCDC9Q9Y3X0 AC044792.1-201ENST00000593294 196 ntBASIC3.87□□□□□ -1.79
CCDC9Q9Y3X0 FRS2-201ENST00000397997 6550 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
CCDC9Q9Y3X0 CCPG1-203ENST00000442196 3453 ntAPPRIS P1 TSL 2 BASIC3.87□□□□□ -1.79
CCDC9Q9Y3X0 AL445259.1-201ENST00000587106 2984 ntTSL 5 BASIC3.86□□□□□ -1.79
CCDC9Q9Y3X0 CEP44-203ENST00000426172 3037 ntTSL 5 BASIC3.86□□□□□ -1.79
CCDC9Q9Y3X0 MIR592-201ENST00000384959 97 ntBASIC3.86□□□□□ -1.79
CCDC9Q9Y3X0 RAB6C-AS1-202ENST00000433431 123 ntBASIC3.86□□□□□ -1.79
CCDC9Q9Y3X0 BX679664.1-201ENST00000434429 253 ntBASIC3.86□□□□□ -1.79
CCDC9Q9Y3X0 AC009237.7-201ENST00000447357 229 ntBASIC3.86□□□□□ -1.79
CCDC9Q9Y3X0 HMGN1P18-201ENST00000457642 277 ntBASIC3.86□□□□□ -1.79
CCDC9Q9Y3X0 snoU13.15-201ENST00000459407 104 ntBASIC3.86□□□□□ -1.79
CCDC9Q9Y3X0 AP003465.1-201ENST00000520575 382 ntTSL 2 BASIC3.86□□□□□ -1.79
CCDC9Q9Y3X0 DEFB131C-201ENST00000528817 165 ntBASIC3.86□□□□□ -1.79
CCDC9Q9Y3X0 CYCSP26-201ENST00000534107 320 ntBASIC3.86□□□□□ -1.79
CCDC9Q9Y3X0 NDUFA5P6-201ENST00000542110 379 ntBASIC3.86□□□□□ -1.79
CCDC9Q9Y3X0 AC022469.2-201ENST00000554759 396 ntTSL 5 BASIC3.86□□□□□ -1.79
CCDC9Q9Y3X0 RMST_8.1-201ENST00000610287 165 ntBASIC3.86□□□□□ -1.79
CCDC9Q9Y3X0 MIR6817-201ENST00000615588 66 ntBASIC3.86□□□□□ -1.79
CCDC9Q9Y3X0 AC005296.1-201ENST00000616145 209 ntBASIC3.86□□□□□ -1.79
CCDC9Q9Y3X0 AC007318.2-201ENST00000620999 243 ntBASIC3.86□□□□□ -1.79
CCDC9Q9Y3X0 AP006437.1-201ENST00000641440 3685 ntBASIC3.85□□□□□ -1.79
CCDC9Q9Y3X0 TTC6-201ENST00000267368 1681 ntTSL 5 BASIC3.85□□□□□ -1.79
CCDC9Q9Y3X0 RNA5SP68-201ENST00000363885 119 ntBASIC3.85□□□□□ -1.79
CCDC9Q9Y3X0 SNORA9.2-201ENST00000365361 133 ntBASIC3.85□□□□□ -1.79
CCDC9Q9Y3X0 RNU6-438P-201ENST00000365561 103 ntBASIC3.85□□□□□ -1.79
CCDC9Q9Y3X0 MIR10B-201ENST00000385011 110 ntBASIC3.85□□□□□ -1.79
CCDC9Q9Y3X0 MTCO2P12-201ENST00000427426 682 ntBASIC3.85□□□□□ -1.79
CCDC9Q9Y3X0 Y_RNA.639-201ENST00000458981 102 ntBASIC3.85□□□□□ -1.79
CCDC9Q9Y3X0 SRI-210ENST00000490437 570 ntTSL 2 BASIC3.85□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 101 ms