Protein–RNA interactions for Protein: Q9UK41

VPS28, Vacuolar protein sorting-associated protein 28 homolog, humanhuman

Predictions only

Length 221 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28Q9UK41 U1.36-201ENST00000620684 176 ntBASIC2.19□□□□□ -2.06
VPS28Q9UK41 ZDBF2-202ENST00000611847 9890 ntTSL 5 BASIC2.18□□□□□ -2.06
VPS28Q9UK41 SNORD50.1-201ENST00000362987 71 ntBASIC2.18□□□□□ -2.06
VPS28Q9UK41 RNA5SP493-201ENST00000364115 91 ntBASIC2.18□□□□□ -2.06
VPS28Q9UK41 MIR1261-201ENST00000408659 82 ntBASIC2.18□□□□□ -2.06
VPS28Q9UK41 AC025918.1-201ENST00000452467 383 ntTSL 3 BASIC2.18□□□□□ -2.06
VPS28Q9UK41 AC079354.2-201ENST00000453523 154 ntBASIC2.18□□□□□ -2.06
VPS28Q9UK41 LINC02540-201ENST00000455554 570 ntTSL 3 BASIC2.18□□□□□ -2.06
VPS28Q9UK41 AC016925.1-201ENST00000458303 298 ntBASIC2.18□□□□□ -2.06
VPS28Q9UK41 RNU1-131P-201ENST00000458943 161 ntBASIC2.18□□□□□ -2.06
VPS28Q9UK41 PTP4A1-204ENST00000578299 135 ntTSL 2 BASIC2.18□□□□□ -2.06
VPS28Q9UK41 AC018638.8-201ENST00000588755 281 ntBASIC2.18□□□□□ -2.06
VPS28Q9UK41 AL109918.3-201ENST00000603072 338 ntBASIC2.18□□□□□ -2.06
VPS28Q9UK41 AC034238.1-213ENST00000611148 150 ntTSL 5 BASIC2.18□□□□□ -2.06
VPS28Q9UK41 AL590240.4-201ENST00000616908 390 ntBASIC2.18□□□□□ -2.06
VPS28Q9UK41 LINC01515-217ENST00000620859 694 ntTSL 5 BASIC2.18□□□□□ -2.06
VPS28Q9UK41 SCARNA4-201ENST00000629045 128 ntBASIC2.18□□□□□ -2.06
VPS28Q9UK41 SCN7A-201ENST00000409855 7183 ntAPPRIS P1 TSL 1 (best) BASIC2.18□□□□□ -2.06
VPS28Q9UK41 SNORA67.3-201ENST00000384366 140 ntBASIC2.17□□□□□ -2.06
VPS28Q9UK41 AL023284.1-201ENST00000403956 276 ntBASIC2.17□□□□□ -2.06
VPS28Q9UK41 EIF4EP2-201ENST00000422816 654 ntBASIC2.17□□□□□ -2.06
VPS28Q9UK41 LINC01710-201ENST00000446002 390 ntTSL 5 BASIC2.17□□□□□ -2.06
VPS28Q9UK41 RPL23AP75-201ENST00000491601 451 ntBASIC2.17□□□□□ -2.06
VPS28Q9UK41 LINC02061-201ENST00000514225 335 ntTSL 3 BASIC2.17□□□□□ -2.06
VPS28Q9UK41 LINC02055-204ENST00000521034 432 ntTSL 5 BASIC2.17□□□□□ -2.06
VPS28Q9UK41 AC025030.2-201ENST00000552558 567 ntTSL 2 BASIC2.17□□□□□ -2.06
VPS28Q9UK41 MIR3169-201ENST00000578032 83 ntBASIC2.17□□□□□ -2.06
VPS28Q9UK41 SNORA59B-202ENST00000578183 701 ntBASIC2.17□□□□□ -2.06
VPS28Q9UK41 MIR5002-201ENST00000584713 97 ntBASIC2.17□□□□□ -2.06
VPS28Q9UK41 AC016727.2-201ENST00000603988 621 ntBASIC2.17□□□□□ -2.06
VPS28Q9UK41 AC009318.2-201ENST00000610917 651 ntBASIC2.17□□□□□ -2.06
VPS28Q9UK41 RMST_6.1-201ENST00000611980 203 ntBASIC2.17□□□□□ -2.06
VPS28Q9UK41 TEX41-243ENST00000614173 190 ntTSL 5 BASIC2.17□□□□□ -2.06
VPS28Q9UK41 AL359697.1-201ENST00000624879 587 ntBASIC2.17□□□□□ -2.06
VPS28Q9UK41 AL591030.1-201ENST00000626131 627 ntTSL 3 BASIC2.17□□□□□ -2.06
VPS28Q9UK41 MIR219B-201ENST00000637023 88 ntBASIC2.17□□□□□ -2.06
VPS28Q9UK41 MARCH7-203ENST00000409591 2147 ntTSL 2 BASIC2.16□□□□□ -2.06
VPS28Q9UK41 AL358453.1-201ENST00000422522 250 ntBASIC2.16□□□□□ -2.06
VPS28Q9UK41 AC139712.2-201ENST00000424302 339 ntBASIC2.16□□□□□ -2.06
VPS28Q9UK41 SMG7-AS1-202ENST00000432837 466 ntTSL 3 BASIC2.16□□□□□ -2.06
VPS28Q9UK41 AL138921.2-201ENST00000443919 578 ntTSL 5 BASIC2.16□□□□□ -2.06
VPS28Q9UK41 AC007395.1-201ENST00000451333 677 ntBASIC2.16□□□□□ -2.06
VPS28Q9UK41 MIR514B-201ENST00000516774 80 ntBASIC2.16□□□□□ -2.06
VPS28Q9UK41 RNU2-44P-201ENST00000516795 194 ntBASIC2.16□□□□□ -2.06
VPS28Q9UK41 RNA5SP454-201ENST00000517231 127 ntBASIC2.16□□□□□ -2.06
VPS28Q9UK41 AF235103.2-201ENST00000525753 346 ntBASIC2.16□□□□□ -2.06
VPS28Q9UK41 DEFB131C-201ENST00000528817 165 ntBASIC2.16□□□□□ -2.06
VPS28Q9UK41 AC026765.1-201ENST00000547876 435 ntTSL 3 BASIC2.16□□□□□ -2.06
VPS28Q9UK41 MIR4299-201ENST00000577899 72 ntBASIC2.16□□□□□ -2.06
VPS28Q9UK41 AL627230.6-201ENST00000611129 280 ntBASIC2.16□□□□□ -2.06
VPS28Q9UK41 AL773524.1-201ENST00000614065 229 ntBASIC2.16□□□□□ -2.06
VPS28Q9UK41 TCL6_2.1-201ENST00000615162 119 ntBASIC2.16□□□□□ -2.06
VPS28Q9UK41 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC2.16□□□□□ -2.06
VPS28Q9UK41 GS1-279B7.1-204ENST00000641809 378 ntBASIC2.16□□□□□ -2.06
VPS28Q9UK41 ANKRD36-208ENST00000639751 3090 ntTSL 5 BASIC2.15□□□□□ -2.06
VPS28Q9UK41 CYLC2-204ENST00000612124 1817 ntAPPRIS P1 TSL 1 (best) BASIC2.15□□□□□ -2.06
VPS28Q9UK41 Y_RNA.86-201ENST00000363020 111 ntBASIC2.15□□□□□ -2.07
VPS28Q9UK41 SNORD114-6-201ENST00000364393 72 ntBASIC2.15□□□□□ -2.07
VPS28Q9UK41 RNU4-9P-201ENST00000364951 139 ntBASIC2.15□□□□□ -2.07
VPS28Q9UK41 Y_RNA.505-201ENST00000384489 102 ntBASIC2.15□□□□□ -2.07
VPS28Q9UK41 SNORA8-201ENST00000384574 139 ntBASIC2.15□□□□□ -2.07
VPS28Q9UK41 SNORA12.2-201ENST00000391040 156 ntBASIC2.15□□□□□ -2.07
VPS28Q9UK41 RNU6ATAC25P-201ENST00000408798 117 ntBASIC2.15□□□□□ -2.07
VPS28Q9UK41 RNA5SP501-201ENST00000410990 112 ntBASIC2.15□□□□□ -2.07
VPS28Q9UK41 AL139396.1-201ENST00000421137 167 ntBASIC2.15□□□□□ -2.07
VPS28Q9UK41 AC244636.1-201ENST00000421152 228 ntBASIC2.15□□□□□ -2.07
VPS28Q9UK41 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC2.15□□□□□ -2.07
VPS28Q9UK41 RPL23AP6-201ENST00000446637 472 ntBASIC2.15□□□□□ -2.07
VPS28Q9UK41 ZEB1-AS1-204ENST00000450834 576 ntTSL 3 BASIC2.15□□□□□ -2.07
VPS28Q9UK41 AC007215.1-201ENST00000464893 276 ntBASIC2.15□□□□□ -2.07
VPS28Q9UK41 RNU4-49P-201ENST00000516080 140 ntBASIC2.15□□□□□ -2.07
VPS28Q9UK41 RNU6-566P-201ENST00000516790 107 ntBASIC2.15□□□□□ -2.07
VPS28Q9UK41 RNU6-1088P-201ENST00000516850 104 ntBASIC2.15□□□□□ -2.07
VPS28Q9UK41 IGKV3-31-201ENST00000523109 329 ntBASIC2.15□□□□□ -2.07
VPS28Q9UK41 HMSD-204ENST00000526932 162 ntTSL 3 BASIC2.15□□□□□ -2.07
VPS28Q9UK41 AP001496.1-201ENST00000579113 471 ntTSL 4 BASIC2.15□□□□□ -2.07
VPS28Q9UK41 BNIP3P10-201ENST00000605360 577 ntBASIC2.15□□□□□ -2.07
VPS28Q9UK41 AL589935.1-202ENST00000612512 393 ntTSL 5 BASIC2.15□□□□□ -2.07
VPS28Q9UK41 U6atac.1-201ENST00000616025 117 ntBASIC2.15□□□□□ -2.07
VPS28Q9UK41 AC009248.2-201ENST00000619826 254 ntBASIC2.15□□□□□ -2.07
VPS28Q9UK41 AL807742.1-203ENST00000637444 759 ntTSL 5 BASIC2.15□□□□□ -2.07
VPS28Q9UK41 KIF20B-202ENST00000371728 6419 ntAPPRIS ALT2 TSL 1 (best) BASIC2.15□□□□□ -2.07
VPS28Q9UK41 MTND5P9-201ENST00000503854 1755 ntBASIC2.15□□□□□ -2.07
VPS28Q9UK41 MTND4P1-201ENST00000457501 1466 ntBASIC2.14□□□□□ -2.07
VPS28Q9UK41 CBX3P1-201ENST00000325243 554 ntBASIC2.14□□□□□ -2.07
VPS28Q9UK41 RNU6-306P-201ENST00000384617 107 ntBASIC2.14□□□□□ -2.07
VPS28Q9UK41 RNU6-510P-201ENST00000391239 108 ntBASIC2.14□□□□□ -2.07
VPS28Q9UK41 NPS-201ENST00000398023 270 ntAPPRIS P1 TSL 5 BASIC2.14□□□□□ -2.07
VPS28Q9UK41 MIR300-201ENST00000401138 83 ntBASIC2.14□□□□□ -2.07
VPS28Q9UK41 MIR320B2-201ENST00000408479 138 ntBASIC2.14□□□□□ -2.07
VPS28Q9UK41 AL132875.2-201ENST00000436418 325 ntTSL 5 BASIC2.14□□□□□ -2.07
VPS28Q9UK41 AC004386.2-201ENST00000441858 148 ntBASIC2.14□□□□□ -2.07
VPS28Q9UK41 AC015983.2-201ENST00000446053 472 ntTSL 3 BASIC2.14□□□□□ -2.07
VPS28Q9UK41 NFU1P2-201ENST00000448700 469 ntBASIC2.14□□□□□ -2.07
VPS28Q9UK41 MTND1P17-201ENST00000448961 204 ntBASIC2.14□□□□□ -2.07
VPS28Q9UK41 FGF7P6-202ENST00000451282 293 ntBASIC2.14□□□□□ -2.07
VPS28Q9UK41 RNU6-717P-201ENST00000459076 104 ntBASIC2.14□□□□□ -2.07
VPS28Q9UK41 AC025033.1-201ENST00000463883 194 ntBASIC2.14□□□□□ -2.07
VPS28Q9UK41 AC082651.2-201ENST00000496833 166 ntBASIC2.14□□□□□ -2.07
VPS28Q9UK41 AL157688.1-201ENST00000555990 369 ntTSL 3 BASIC2.14□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 170.1 ms