Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 Y_RNA.132-201ENST00000363421 102 ntBASIC2.17□□□□□ -2.06
UPF3AQ9H1J1 RNU6-596P-201ENST00000365395 98 ntBASIC2.17□□□□□ -2.06
UPF3AQ9H1J1 SNORD42.2-201ENST00000365570 69 ntBASIC2.17□□□□□ -2.06
UPF3AQ9H1J1 RNU6-890P-201ENST00000384121 107 ntBASIC2.17□□□□□ -2.06
UPF3AQ9H1J1 RNU6-790P-201ENST00000384479 105 ntBASIC2.17□□□□□ -2.06
UPF3AQ9H1J1 RNU6-748P-201ENST00000384648 107 ntBASIC2.17□□□□□ -2.06
UPF3AQ9H1J1 MTCYBP4-201ENST00000401524 249 ntBASIC2.17□□□□□ -2.06
UPF3AQ9H1J1 AP000275.1-201ENST00000411943 390 ntBASIC2.17□□□□□ -2.06
UPF3AQ9H1J1 AL513008.1-201ENST00000412701 161 ntTSL 5 BASIC2.17□□□□□ -2.06
UPF3AQ9H1J1 RPS20P15-201ENST00000412792 311 ntBASIC2.17□□□□□ -2.06
UPF3AQ9H1J1 AL354751.2-201ENST00000415471 210 ntBASIC2.17□□□□□ -2.06
UPF3AQ9H1J1 AL445685.2-201ENST00000422551 342 ntBASIC2.17□□□□□ -2.06
UPF3AQ9H1J1 MTND4P28-201ENST00000426217 387 ntBASIC2.17□□□□□ -2.06
UPF3AQ9H1J1 RPL23AP95-201ENST00000426806 265 ntBASIC2.17□□□□□ -2.06
UPF3AQ9H1J1 AL591043.1-201ENST00000432461 424 ntBASIC2.17□□□□□ -2.06
UPF3AQ9H1J1 AC022445.1-201ENST00000457499 408 ntTSL 3 BASIC2.17□□□□□ -2.06
UPF3AQ9H1J1 HMGN1P13-201ENST00000505795 138 ntBASIC2.17□□□□□ -2.06
UPF3AQ9H1J1 AC097473.1-201ENST00000508142 408 ntBASIC2.17□□□□□ -2.06
UPF3AQ9H1J1 SCARNA16.2-201ENST00000516520 172 ntBASIC2.17□□□□□ -2.06
UPF3AQ9H1J1 RNU5B-3P-201ENST00000516601 115 ntBASIC2.17□□□□□ -2.06
UPF3AQ9H1J1 Y_RNA.701-201ENST00000516812 110 ntBASIC2.17□□□□□ -2.06
UPF3AQ9H1J1 EBAG9-207ENST00000531677 777 ntTSL 1 (best) BASIC2.17□□□□□ -2.06
UPF3AQ9H1J1 GNAI2P1-201ENST00000541815 315 ntBASIC2.17□□□□□ -2.06
UPF3AQ9H1J1 AC093249.1-201ENST00000567049 203 ntBASIC2.17□□□□□ -2.06
UPF3AQ9H1J1 MIR3683-201ENST00000580847 82 ntBASIC2.17□□□□□ -2.06
UPF3AQ9H1J1 AC044792.1-201ENST00000593294 196 ntBASIC2.17□□□□□ -2.06
UPF3AQ9H1J1 MIR6840-201ENST00000611937 71 ntBASIC2.17□□□□□ -2.06
UPF3AQ9H1J1 AL449363.1-201ENST00000617815 186 ntBASIC2.17□□□□□ -2.06
UPF3AQ9H1J1 AC090574.1-201ENST00000623186 233 ntBASIC2.17□□□□□ -2.06
UPF3AQ9H1J1 AL450472.1-202ENST00000637286 180 ntBASIC2.17□□□□□ -2.06
UPF3AQ9H1J1 MIR3529-201ENST00000637713 78 ntBASIC2.17□□□□□ -2.06
UPF3AQ9H1J1 MIR7515-201ENST00000637837 67 ntBASIC2.17□□□□□ -2.06
UPF3AQ9H1J1 ZNF736P3Y-201ENST00000428264 1465 ntBASIC2.17□□□□□ -2.06
UPF3AQ9H1J1 LINC01938-201ENST00000521341 1864 ntTSL 2 BASIC2.17□□□□□ -2.06
UPF3AQ9H1J1 CALCRL-201ENST00000392370 5155 ntAPPRIS P1 TSL 1 (best) BASIC2.17□□□□□ -2.06
UPF3AQ9H1J1 HAUS6P2-201ENST00000433254 2404 ntBASIC2.17□□□□□ -2.06
UPF3AQ9H1J1 AC080128.1-201ENST00000474389 1917 ntBASIC2.17□□□□□ -2.06
UPF3AQ9H1J1 OR5M1-202ENST00000641076 4302 ntAPPRIS P1 BASIC2.16□□□□□ -2.06
UPF3AQ9H1J1 AC111000.4-202ENST00000505646 2648 ntTSL 2 BASIC2.16□□□□□ -2.06
UPF3AQ9H1J1 RNU6-227P-201ENST00000362865 103 ntBASIC2.16□□□□□ -2.06
UPF3AQ9H1J1 RNU6-529P-201ENST00000363383 104 ntBASIC2.16□□□□□ -2.06
UPF3AQ9H1J1 RNU6-487P-201ENST00000365430 104 ntBASIC2.16□□□□□ -2.06
UPF3AQ9H1J1 Y_RNA.460-201ENST00000384255 102 ntBASIC2.16□□□□□ -2.06
UPF3AQ9H1J1 MIR544A-201ENST00000384855 91 ntBASIC2.16□□□□□ -2.06
UPF3AQ9H1J1 MIR521-1-201ENST00000384902 87 ntBASIC2.16□□□□□ -2.06
UPF3AQ9H1J1 RPL23AP36-201ENST00000413895 458 ntBASIC2.16□□□□□ -2.06
UPF3AQ9H1J1 AC010731.2-201ENST00000415275 440 ntTSL 3 BASIC2.16□□□□□ -2.06
UPF3AQ9H1J1 AC012370.1-201ENST00000419244 530 ntTSL 3 BASIC2.16□□□□□ -2.06
UPF3AQ9H1J1 SIRPG-AS1-201ENST00000437384 410 ntTSL 3 BASIC2.16□□□□□ -2.06
UPF3AQ9H1J1 MAMDC2-AS1-205ENST00000451488 317 ntTSL 3 BASIC2.16□□□□□ -2.06
UPF3AQ9H1J1 RPL30P15-201ENST00000457129 321 ntBASIC2.16□□□□□ -2.06
UPF3AQ9H1J1 AC006026.2-201ENST00000457376 180 ntBASIC2.16□□□□□ -2.06
UPF3AQ9H1J1 RPL30P12-201ENST00000474666 353 ntBASIC2.16□□□□□ -2.06
UPF3AQ9H1J1 LINC02046-202ENST00000481334 390 ntTSL 3 BASIC2.16□□□□□ -2.06
UPF3AQ9H1J1 RPL23AP63-201ENST00000498752 471 ntBASIC2.16□□□□□ -2.06
UPF3AQ9H1J1 AC108037.1-201ENST00000514103 423 ntTSL 3 BASIC2.16□□□□□ -2.06
UPF3AQ9H1J1 AC093303.1-201ENST00000514549 295 ntBASIC2.16□□□□□ -2.06
UPF3AQ9H1J1 RNU5F-8P-201ENST00000515941 111 ntBASIC2.16□□□□□ -2.06
UPF3AQ9H1J1 CBX3P8-201ENST00000532412 525 ntBASIC2.16□□□□□ -2.06
UPF3AQ9H1J1 LINC02095-202ENST00000543512 323 ntTSL 3 BASIC2.16□□□□□ -2.06
UPF3AQ9H1J1 POC1B-211ENST00000549504 581 ntTSL 5 BASIC2.16□□□□□ -2.06
UPF3AQ9H1J1 BX546450.2-201ENST00000602419 435 ntTSL 5 BASIC2.16□□□□□ -2.06
UPF3AQ9H1J1 AC005014.2-201ENST00000607795 599 ntBASIC2.16□□□□□ -2.06
UPF3AQ9H1J1 AL159153.1-201ENST00000619688 317 ntBASIC2.16□□□□□ -2.06
UPF3AQ9H1J1 AC012640.5-201ENST00000623897 319 ntBASIC2.16□□□□□ -2.06
UPF3AQ9H1J1 THOC2-216ENST00000491737 4452 ntTSL 5 BASIC2.15□□□□□ -2.06
UPF3AQ9H1J1 RNU6-1285P-201ENST00000363480 105 ntBASIC2.15□□□□□ -2.07
UPF3AQ9H1J1 Y_RNA.533-201ENST00000384596 114 ntBASIC2.15□□□□□ -2.07
UPF3AQ9H1J1 MIR559-201ENST00000385188 96 ntBASIC2.15□□□□□ -2.07
UPF3AQ9H1J1 AL445259.1-203ENST00000427828 251 ntTSL 3 BASIC2.15□□□□□ -2.07
UPF3AQ9H1J1 AC236972.2-201ENST00000434979 310 ntBASIC2.15□□□□□ -2.07
UPF3AQ9H1J1 MTCYBP6-201ENST00000441810 138 ntBASIC2.15□□□□□ -2.07
UPF3AQ9H1J1 AL442638.1-201ENST00000443359 237 ntTSL 5 BASIC2.15□□□□□ -2.07
UPF3AQ9H1J1 TSPY5P-202ENST00000456541 142 ntTSL 3 BASIC2.15□□□□□ -2.07
UPF3AQ9H1J1 Y_RNA.639-201ENST00000458981 102 ntBASIC2.15□□□□□ -2.07
UPF3AQ9H1J1 Y_RNA.653-201ENST00000459091 95 ntBASIC2.15□□□□□ -2.07
UPF3AQ9H1J1 U8.21-201ENST00000459536 136 ntBASIC2.15□□□□□ -2.07
UPF3AQ9H1J1 AC027575.1-201ENST00000481064 460 ntBASIC2.15□□□□□ -2.07
UPF3AQ9H1J1 RNU6ATAC12P-201ENST00000516542 115 ntBASIC2.15□□□□□ -2.07
UPF3AQ9H1J1 AC022784.2-201ENST00000521298 328 ntTSL 2 BASIC2.15□□□□□ -2.07
UPF3AQ9H1J1 MRPS36P4-201ENST00000534436 298 ntBASIC2.15□□□□□ -2.07
UPF3AQ9H1J1 AC126323.6-201ENST00000561701 451 ntTSL 3 BASIC2.15□□□□□ -2.07
UPF3AQ9H1J1 AC131274.4-201ENST00000577879 398 ntTSL 3 BASIC2.15□□□□□ -2.07
UPF3AQ9H1J1 MIR5696-201ENST00000578474 85 ntBASIC2.15□□□□□ -2.07
UPF3AQ9H1J1 MIR5690-201ENST00000583739 73 ntBASIC2.15□□□□□ -2.07
UPF3AQ9H1J1 AP001109.1-201ENST00000587114 279 ntTSL 3 BASIC2.15□□□□□ -2.07
UPF3AQ9H1J1 HOXA11-AS1_4.1-201ENST00000620901 233 ntBASIC2.15□□□□□ -2.07
UPF3AQ9H1J1 NCBP1-205ENST00000629069 249 ntTSL 5 BASIC2.15□□□□□ -2.07
UPF3AQ9H1J1 AK9-203ENST00000368948 2478 ntTSL 5 BASIC2.15□□□□□ -2.07
UPF3AQ9H1J1 MTND5P30-201ENST00000452896 1731 ntBASIC2.14□□□□□ -2.07
UPF3AQ9H1J1 AL161668.1-201ENST00000320322 358 ntTSL 1 (best) BASIC2.14□□□□□ -2.07
UPF3AQ9H1J1 AL596028.1-201ENST00000326971 197 ntBASIC2.14□□□□□ -2.07
UPF3AQ9H1J1 Y_RNA.2-201ENST00000362330 96 ntBASIC2.14□□□□□ -2.07
UPF3AQ9H1J1 Y_RNA.123-201ENST00000363338 102 ntBASIC2.14□□□□□ -2.07
UPF3AQ9H1J1 Y_RNA.187-201ENST00000363918 113 ntBASIC2.14□□□□□ -2.07
UPF3AQ9H1J1 SNORA36A-201ENST00000384221 132 ntBASIC2.14□□□□□ -2.07
UPF3AQ9H1J1 RNU6-474P-201ENST00000384243 107 ntBASIC2.14□□□□□ -2.07
UPF3AQ9H1J1 RNU6-784P-201ENST00000384330 106 ntBASIC2.14□□□□□ -2.07
UPF3AQ9H1J1 RNU6-1106P-201ENST00000390845 107 ntBASIC2.14□□□□□ -2.07
UPF3AQ9H1J1 SNORA75.6-201ENST00000391318 127 ntBASIC2.14□□□□□ -2.07
Retrieved 100 of 98,524 protein–RNA pairs in 106.8 ms