Protein–RNA interactions for Protein: Q9BZI7

UPF3B, Regulator of nonsense transcripts 3B, humanhuman

Known RBP Predictions only

Length 483 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3BQ9BZI7 AP006219.1-201ENST00000580258 472 ntTSL 3 BASIC0.71□□□□□ -2.3
UPF3BQ9BZI7 MIR4742-201ENST00000581069 85 ntBASIC0.71□□□□□ -2.3
UPF3BQ9BZI7 AC073539.2-201ENST00000597113 165 ntBASIC0.71□□□□□ -2.3
UPF3BQ9BZI7 MIR338-201ENST00000636369 67 ntBASIC0.71□□□□□ -2.3
UPF3BQ9BZI7 RNU6-222P-201ENST00000362438 107 ntBASIC0.7□□□□□ -2.3
UPF3BQ9BZI7 RNU4-79P-201ENST00000362764 141 ntBASIC0.7□□□□□ -2.3
UPF3BQ9BZI7 RNU4-1-201ENST00000363925 141 ntBASIC0.7□□□□□ -2.3
UPF3BQ9BZI7 SNORD32A-201ENST00000364805 84 ntBASIC0.7□□□□□ -2.3
UPF3BQ9BZI7 Y_RNA.302-201ENST00000364997 102 ntBASIC0.7□□□□□ -2.3
UPF3BQ9BZI7 RNU6-61P-201ENST00000365528 109 ntBASIC0.7□□□□□ -2.3
UPF3BQ9BZI7 Y_RNA.471-201ENST00000384312 102 ntBASIC0.7□□□□□ -2.3
UPF3BQ9BZI7 RPS29P13-201ENST00000402041 169 ntBASIC0.7□□□□□ -2.3
UPF3BQ9BZI7 RNA5SP111-201ENST00000411386 101 ntBASIC0.7□□□□□ -2.3
UPF3BQ9BZI7 AC114482.1-201ENST00000418010 247 ntBASIC0.7□□□□□ -2.3
UPF3BQ9BZI7 AC060773.1-201ENST00000421698 310 ntBASIC0.7□□□□□ -2.3
UPF3BQ9BZI7 RPS27AP14-201ENST00000422868 454 ntBASIC0.7□□□□□ -2.3
UPF3BQ9BZI7 RPS20P10-201ENST00000451209 253 ntBASIC0.7□□□□□ -2.3
UPF3BQ9BZI7 BNIP3P40-201ENST00000596017 556 ntBASIC0.7□□□□□ -2.3
UPF3BQ9BZI7 AC008751.2-201ENST00000597885 980 ntBASIC0.7□□□□□ -2.3
UPF3BQ9BZI7 PRKCQ-AS1-208ENST00000608453 587 ntTSL 5 BASIC0.7□□□□□ -2.3
UPF3BQ9BZI7 AC126177.8-201ENST00000618339 1015 ntBASIC0.7□□□□□ -2.3
UPF3BQ9BZI7 MESTIT1_1.1-201ENST00000618871 140 ntBASIC0.7□□□□□ -2.3
UPF3BQ9BZI7 AL136221.1-201ENST00000621449 509 ntBASIC0.7□□□□□ -2.3
UPF3BQ9BZI7 TPTE2-204ENST00000400103 1652 ntTSL 5 BASIC0.69□□□□□ -2.3
UPF3BQ9BZI7 CYLC1-201ENST00000329312 2106 ntAPPRIS P3 TSL 1 (best) BASIC0.69□□□□□ -2.3
UPF3BQ9BZI7 MIR300-201ENST00000401138 83 ntBASIC0.69□□□□□ -2.3
UPF3BQ9BZI7 AC063976.4-201ENST00000421971 163 ntBASIC0.69□□□□□ -2.3
UPF3BQ9BZI7 AL592431.2-201ENST00000422198 171 ntTSL 3 BASIC0.69□□□□□ -2.3
UPF3BQ9BZI7 PLCB1-IT1-201ENST00000441231 373 ntTSL 3 BASIC0.69□□□□□ -2.3
UPF3BQ9BZI7 PDCD5P2-201ENST00000507570 312 ntBASIC0.69□□□□□ -2.3
UPF3BQ9BZI7 RNU6-322P-201ENST00000516010 103 ntBASIC0.69□□□□□ -2.3
UPF3BQ9BZI7 RNU6-197P-201ENST00000516680 100 ntBASIC0.69□□□□□ -2.3
UPF3BQ9BZI7 AC024995.1-201ENST00000523014 93 ntBASIC0.69□□□□□ -2.3
UPF3BQ9BZI7 ZNF321P-202ENST00000550843 495 ntBASIC0.69□□□□□ -2.3
UPF3BQ9BZI7 AC021231.3-201ENST00000558497 370 ntBASIC0.69□□□□□ -2.3
UPF3BQ9BZI7 AL513534.2-201ENST00000603836 250 ntBASIC0.69□□□□□ -2.3
UPF3BQ9BZI7 AC064872.1-201ENST00000604823 1072 ntBASIC0.69□□□□□ -2.3
UPF3BQ9BZI7 AC009994.1-201ENST00000606889 253 ntBASIC0.69□□□□□ -2.3
UPF3BQ9BZI7 AC064807.4-201ENST00000607201 407 ntBASIC0.69□□□□□ -2.3
UPF3BQ9BZI7 AC009229.3-201ENST00000608056 282 ntBASIC0.69□□□□□ -2.3
UPF3BQ9BZI7 AP000484.1-201ENST00000620067 1252 ntBASIC0.69□□□□□ -2.3
UPF3BQ9BZI7 AL359697.1-201ENST00000624879 587 ntBASIC0.69□□□□□ -2.3
UPF3BQ9BZI7 BX322639.1-202ENST00000423987 2213 ntBASIC0.69□□□□□ -2.3
UPF3BQ9BZI7 AC068700.1-201ENST00000565862 3754 ntBASIC0.68□□□□□ -2.3
UPF3BQ9BZI7 KLRF1-202ENST00000354855 838 ntTSL 1 (best) BASIC0.68□□□□□ -2.3
UPF3BQ9BZI7 RNU6-757P-201ENST00000410334 100 ntBASIC0.68□□□□□ -2.3
UPF3BQ9BZI7 C1DP2-201ENST00000418167 426 ntBASIC0.68□□□□□ -2.3
UPF3BQ9BZI7 MTCO2P21-201ENST00000419780 677 ntBASIC0.68□□□□□ -2.3
UPF3BQ9BZI7 AC016632.1-201ENST00000503994 196 ntBASIC0.68□□□□□ -2.3
UPF3BQ9BZI7 RBBP4P6-201ENST00000508098 202 ntBASIC0.68□□□□□ -2.3
UPF3BQ9BZI7 SNORA62.5-201ENST00000516634 120 ntBASIC0.68□□□□□ -2.3
UPF3BQ9BZI7 TMF1P1-201ENST00000576058 373 ntBASIC0.68□□□□□ -2.3
UPF3BQ9BZI7 AL359999.1-201ENST00000604513 294 ntBASIC0.68□□□□□ -2.3
UPF3BQ9BZI7 TEX41-243ENST00000614173 190 ntTSL 5 BASIC0.68□□□□□ -2.3
UPF3BQ9BZI7 AC136475.10-201ENST00000620253 385 ntBASIC0.68□□□□□ -2.3
UPF3BQ9BZI7 ZRANB2-AS2-222ENST00000625045 1014 ntTSL 5 BASIC0.68□□□□□ -2.3
UPF3BQ9BZI7 PPP2R2A-224ENST00000640787 318 ntTSL 5 BASIC0.68□□□□□ -2.3
UPF3BQ9BZI7 GLMN-201ENST00000370360 1995 ntAPPRIS P1 TSL 1 (best) BASIC0.68□□□□□ -2.3
UPF3BQ9BZI7 ELL2P3-201ENST00000457883 1602 ntBASIC0.67□□□□□ -2.3
UPF3BQ9BZI7 RNU6-692P-201ENST00000384496 107 ntBASIC0.67□□□□□ -2.3
UPF3BQ9BZI7 MIR92A1-201ENST00000385233 78 ntBASIC0.67□□□□□ -2.3
UPF3BQ9BZI7 C5orf58-201ENST00000421269 406 ntAPPRIS ALT2 TSL 2 BASIC0.67□□□□□ -2.3
UPF3BQ9BZI7 RPL31P35-201ENST00000431058 377 ntBASIC0.67□□□□□ -2.3
UPF3BQ9BZI7 AC002429.1-201ENST00000437672 148 ntBASIC0.67□□□□□ -2.3
UPF3BQ9BZI7 SNRPGP7-201ENST00000469016 106 ntBASIC0.67□□□□□ -2.3
UPF3BQ9BZI7 AC023050.3-201ENST00000541142 333 ntBASIC0.67□□□□□ -2.3
UPF3BQ9BZI7 ZNF519P3-201ENST00000557158 1032 ntBASIC0.67□□□□□ -2.3
UPF3BQ9BZI7 AC084882.1-201ENST00000561254 555 ntTSL 4 BASIC0.67□□□□□ -2.3
UPF3BQ9BZI7 AC092071.1-201ENST00000597260 549 ntTSL 5 BASIC0.67□□□□□ -2.3
UPF3BQ9BZI7 AC105148.1-201ENST00000604961 409 ntBASIC0.67□□□□□ -2.3
UPF3BQ9BZI7 RNA5SP499-201ENST00000363982 119 ntBASIC0.66□□□□□ -2.3
UPF3BQ9BZI7 Y_RNA.324-201ENST00000365165 102 ntBASIC0.66□□□□□ -2.3
UPF3BQ9BZI7 RNU6-39P-201ENST00000384344 107 ntBASIC0.66□□□□□ -2.3
UPF3BQ9BZI7 RNU6ATAC8P-201ENST00000408460 126 ntBASIC0.66□□□□□ -2.3
UPF3BQ9BZI7 AC119618.1-201ENST00000434191 222 ntBASIC0.66□□□□□ -2.3
UPF3BQ9BZI7 AC008080.3-201ENST00000440074 380 ntTSL 3 BASIC0.66□□□□□ -2.3
UPF3BQ9BZI7 SNORD124-201ENST00000459577 104 ntBASIC0.66□□□□□ -2.3
UPF3BQ9BZI7 CFLAR-AS1-202ENST00000474886 223 ntTSL 3 BASIC0.66□□□□□ -2.3
UPF3BQ9BZI7 HMGN1P12-201ENST00000499125 195 ntBASIC0.66□□□□□ -2.3
UPF3BQ9BZI7 AC116347.2-201ENST00000514912 523 ntBASIC0.66□□□□□ -2.3
UPF3BQ9BZI7 RNA5SP168-201ENST00000516642 112 ntBASIC0.66□□□□□ -2.3
UPF3BQ9BZI7 AC120042.2-201ENST00000521556 667 ntTSL 2 BASIC0.66□□□□□ -2.3
UPF3BQ9BZI7 MIR6086-201ENST00000638065 55 ntBASIC0.66□□□□□ -2.3
UPF3BQ9BZI7 RNU6-562P-201ENST00000362731 107 ntBASIC0.65□□□□□ -2.31
UPF3BQ9BZI7 RNU6-336P-201ENST00000364891 107 ntBASIC0.65□□□□□ -2.31
UPF3BQ9BZI7 Y_RNA.294-201ENST00000364916 102 ntBASIC0.65□□□□□ -2.31
UPF3BQ9BZI7 RNU6-877P-201ENST00000383868 107 ntBASIC0.65□□□□□ -2.31
UPF3BQ9BZI7 RNU6-378P-201ENST00000384324 107 ntBASIC0.65□□□□□ -2.31
UPF3BQ9BZI7 RNU7-34P-201ENST00000459394 64 ntBASIC0.65□□□□□ -2.31
UPF3BQ9BZI7 HMGN1P10-201ENST00000474557 553 ntBASIC0.65□□□□□ -2.31
UPF3BQ9BZI7 AC010587.1-201ENST00000505809 469 ntBASIC0.65□□□□□ -2.31
UPF3BQ9BZI7 GTF2H2C-212ENST00000512736 832 ntTSL 1 (best) BASIC0.65□□□□□ -2.31
UPF3BQ9BZI7 SNORA31.2-201ENST00000516019 134 ntBASIC0.65□□□□□ -2.31
UPF3BQ9BZI7 SNORD79.1-201ENST00000516069 84 ntBASIC0.65□□□□□ -2.31
UPF3BQ9BZI7 RNU6-1146P-201ENST00000516282 102 ntBASIC0.65□□□□□ -2.31
UPF3BQ9BZI7 MDM2-221ENST00000517852 393 ntTSL 1 (best) BASIC0.65□□□□□ -2.31
UPF3BQ9BZI7 SUMO2P16-201ENST00000519475 264 ntBASIC0.65□□□□□ -2.31
UPF3BQ9BZI7 AC022432.1-201ENST00000595739 310 ntBASIC0.65□□□□□ -2.31
UPF3BQ9BZI7 C8orf59-212ENST00000615697 483 ntAPPRIS P1 TSL 2 BASIC0.65□□□□□ -2.31
UPF3BQ9BZI7 AL391994.1-201ENST00000254724 282 ntBASIC0.64□□□□□ -2.31
Retrieved 100 of 98,524 protein–RNA pairs in 104.1 ms